Page generated on Fri Oct 15 12:01:09 2010

dme-let-7



dme-let-7

View dme-let-7 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-let-7	127	8888718	2545	65	8880960		10035	17	186	19	8880960	10035

GGACTACACCAAGGACCTTTTTCTCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTACACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTACAAGCCGCATTTGATAAAAGA
.........................((.((((((..(((.(((((.(((((((((((..............))))))))))).))))).)))..)))))).))........................-30.44
((.((......((((.....)))).((.((((((..(((.(((((.(((((((((((..............))))))))))).))))).)))..)))))).)).....))))...............-32.94
Sense strand

	Size	Blast	Total	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR031693_4	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	V090 CS  male total RNA	V098 dcr-2[L811fsX] ovary	V097 CS ovary	SRR010951 Ago3 heterozygotes, oxidized	SRR010960 wt, oxidized	V083 male, one day	V076 ML-DmBG3-C2	V084 female, one day	S29 male head #1	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR031701 Total small RNAs from r2d2 heterozygous flies	V088 r2d2[1] ovary total RNA	SRR029633 total small RNAs from hen1 homozygous flies	SRR031696_2152	V089 ago2[414] ovary total RNA	SRR031692 Total small RNAs from Oregon R	V063 CS,ovary,AGO1IP	S22 female head #1	SRR010952 Ago3 trans-heterozygotes, oxidized	V065 dcr-2[L811fsX], ovary, AGO1IP	S24 male body #2	SRR001347 ago2 untreated	SRR001664 homozygous dcr-2_untreated	SRR001338 IR non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V064 ago2[414], ovary, AGO1IP	V066 r2d2[1], ovary, AGO1IP	SRR001349 heterozygous dcr-2_untreated	S27 0-1d Pupae (w)	GSM280085 WT testes (18-24nt)	V075 ML-DmBG1-C1	S28 0-2d pupae	S9 0-1h #3 (7)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S35 KC+48 #2	GSM379065 Zuc Heterozygote	S2 female head	SRR001345 ago2 non-beta-eliminated	S23 female body #2	SRR014277 Ovary_rep1 NA_P	GSM379057 Krimp Mutant	SRR014275 Ovary_rep1 LK_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014280 Ovary_rep1 w1118_P	GSM379063 Vasa Heterozygote	GSM467729 WT	SRR014273 Ovary_rep1_Har_P	GSM379064 Vasa Mutant	S1 male head	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM379061 Squ Heterozygote	GSM467730 r2d2	S34 KC+48 #1	S18 3rd inster #2	GSM379051 Armi Mutant	S20 2-4day pupae#2	SRR014282 Ovary_rep1 wK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM180328 adult heads (female heads, male heads)	GSM379066 Zuc Mutant	GSM379060 SpnE Heterozygote	GSM280084 loqs-/- ovaries (18-29nt)	SRR001343 dcr-2 non-beta-eliminated	GSM379062 Squ Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM379056 Krimp Heterozygote	GSM379052 Aub Heterozygote	S32 s2+48 #2	V008 S2-DRSC	GSM379050 Armi Heterozygote	SRR001344 dcr-2 beta-eliminated	GSM467731 loq	S4 female body	S3 male body	GSM379058	GSM379054 Flam Heterozygote	GSM379059	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR001348 ago2 oxidized	GSM379053 Aub Mutant	S19 2-4day pupae #1	S8 S2-48,+48, KC-48, +48 mix	GSM379067 SpnE Mutant	S10 2-6h #1 (8)	GSM280082 WT ovaries (18-29nt)	GSM343287 Drosophila Toll 10b mutant embryos	S31 s2+48 #1	GSM379055 Flam Mutant	GSM180329 adult bodies (female bodies, male bodies)	S5 imaginal disc	S21 disk #2	GSM239041 fly heads, non beta-eliminated	GSM246084 D. melanogaster adult male heads 454	V018 Kc167 cell	V082 embryo 14-24hr	V024 kc167 cell	S17 3rd inster #1	V026 1182-4H cell	SRR001337 WT_females beta-eliminated	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR010956 Piwi IP in Ago3 heterozygotes	V009 CMEL1	V021 ML-DmD21 cell	SRR032092 mock oxidized	GSM280087 S2cell (AGO2IP)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	OSS8 Drosophila OSS cell small RNA libraries, rep4	V081 embryo 2-6hr	SRR001340 IR beta-eliminated	S33 KC-48 #2	SRR001346 ago2 beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	S30 s2-48 #2	V033 CMEW1 Cl.8+ cell	SRR010955 Aub IP in Ago3 heterozygotes	SRR032094 ago2 knockdown	GSM280088 S2cell (AGO1IP)	V011 Sg4	SRR029033 lacZ knockdown	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR029032 r2d2 knockdown	GSM239052 S2 cells, non beta-eliminated	S25 1st instar #1	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V020 S2R+ cell	SRR029029 dcr-1 knockdown	GSM180335 imaginal discs	S7 12-24hr embryo	S13 6-10h #2 (11)	SRR029028 untreated (mock)	S12 6-10h #1 (10)	SRR010954 Aub trans-heterozygotes, oxidized	SRR029030 dcr-2 knockdown	SRR010959 Ago3 IP in heterozygotes	V001 IR-	SRR010953 Aub heterozygotes, oxidized	V028 CMEW1 Cl.8+ cell	SRR001342 WT_males beta-eliminated	V025 S2R+ cell	S11 2-6h #2 (9)	SRR029031 loqs-ORF knockdown	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM239050 fly heads, beta-eliminated	V067 S2-NP	S26 1st instar #2	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	V002 IR+	V010 MLDmD20c5	V019 GM2 cell	GSM180331 early embryo (2-6)	SRR032093 ago1 knockdown	GSM239051 S2 cells, beta-eliminated	SRR023402 total RNA extracted from NLS-P19 cells	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S14 0-1hr #1 (A)	SRR032095 AGO1 IP dcr2 knockdown	S15 S2 -48 #1	S16 KC -48 #1	GSM180332 mid embryo (6-10)	GSM180333 late embryo (12-24)	SRR023197 RNA Library from S2 control cells	SRR023399 RNA bound by P19 protein	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM180330 very early embryo (0-1)	SRR032096 AGO2 IP dcr2 knockdown	GSM280086 WT ovaries (AGO2IP)	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	GSM180337 tissue culture cells (S2 only)	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM424739 S2 parental
.....ACACCAAGGACCTTTTTCTCTCT...................................................................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GACCTTTTTCTCTCTGGCAAAT............................................................................................	22	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ACCTTTTTCTCTCTGGCAAAT............................................................................................	21	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCTTTTTCTCTCTGGCAAAT............................................................................................	20	1	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	2	1	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTTTTTCTCTCTGGCAAAT............................................................................................	19	1	28	0	0	0	0	0	1	0	0	0	0	1	9	0	1	1	0	0	3	1	0	0	0	0	1	0	0	2	0	0	1	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TTTTTCTCTCTGGCAAAT............................................................................................	18	1	21	0	0	0	1	0	0	0	0	0	0	0	5	0	0	0	0	1	0	1	0	0	1	0	0	0	0	1	0	1	0	0	0	0	1	2	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AATTGAGGTAGTAGGTTGTATA.........................................................................	22	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATTGAGGTAGTAGGTTGTATAG........................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATTGAGGTAGTAGGTTGTATA.........................................................................	21	1	36	15	9	8	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TTGAGGTAGTAGGTTGTATAGTA......................................................................	23	1	6	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TTGAGGTAGTAGGTTGTATAG........................................................................	21	1	16	0	0	0	0	0	1	0	0	0	0	0	1	0	2	0	0	0	2	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................TATACAATGTGCTAGCTTTC.................................	20	1	17	3	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TATACAATGTGCTAGCTTTCTT...............................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATACAATGTGCTAGCTTTCT................................	20	1	11	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATACAATGTGCTAGCTTTC.................................	19	1	3	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TACAATGTGCTAGCTTTCT................................	19	1	8	2	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................ACAATGTGCTAGCTTTCT................................	18	1	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTGCTTGACTACAAGCCGCATTTGAT......	26	1	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTGCTTGACTACAAGCCGCAT...........	21	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTGCTTGACTACAAGCCGCATTTGATA.....	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTGCTTGACTACAAGCCGCATTTG........	24	1	9	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR031693_4	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	V090 CS  male total RNA	V098 dcr-2[L811fsX] ovary	V097 CS ovary	SRR010951 Ago3 heterozygotes, oxidized	SRR010960 wt, oxidized	V083 male, one day	V076 ML-DmBG3-C2	V084 female, one day	S29 male head #1	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR031701 Total small RNAs from r2d2 heterozygous flies	V088 r2d2[1] ovary total RNA	SRR029633 total small RNAs from hen1 homozygous flies	SRR031696_2152	V089 ago2[414] ovary total RNA	SRR031692 Total small RNAs from Oregon R	V063 CS,ovary,AGO1IP	S22 female head #1	SRR010952 Ago3 trans-heterozygotes, oxidized	V065 dcr-2[L811fsX], ovary, AGO1IP	S24 male body #2	SRR001347 ago2 untreated	SRR001664 homozygous dcr-2_untreated	SRR001338 IR non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V064 ago2[414], ovary, AGO1IP	V066 r2d2[1], ovary, AGO1IP	SRR001349 heterozygous dcr-2_untreated	S27 0-1d Pupae (w)	GSM280085 WT testes (18-24nt)	V075 ML-DmBG1-C1	S28 0-2d pupae	S9 0-1h #3 (7)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S35 KC+48 #2	GSM379065 Zuc Heterozygote	S2 female head	SRR001345 ago2 non-beta-eliminated	S23 female body #2	SRR014277 Ovary_rep1 NA_P	GSM379057 Krimp Mutant	SRR014275 Ovary_rep1 LK_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014280 Ovary_rep1 w1118_P	GSM379063 Vasa Heterozygote	GSM467729 WT	SRR014273 Ovary_rep1_Har_P	GSM379064 Vasa Mutant	S1 male head	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM379061 Squ Heterozygote	GSM467730 r2d2	S34 KC+48 #1	S18 3rd inster #2	GSM379051 Armi Mutant	S20 2-4day pupae#2	SRR014282 Ovary_rep1 wK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM180328 adult heads (female heads, male heads)	GSM379066 Zuc Mutant	GSM379060 SpnE Heterozygote	GSM280084 loqs-/- ovaries (18-29nt)	SRR001343 dcr-2 non-beta-eliminated	GSM379062 Squ Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM379056 Krimp Heterozygote	GSM379052 Aub Heterozygote	S32 s2+48 #2	V008 S2-DRSC	GSM379050 Armi Heterozygote	SRR001344 dcr-2 beta-eliminated	GSM467731 loq	S4 female body	S3 male body	GSM379058	GSM379054 Flam Heterozygote	GSM379059	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR001348 ago2 oxidized	GSM379053 Aub Mutant	S19 2-4day pupae #1	S8 S2-48,+48, KC-48, +48 mix	GSM379067 SpnE Mutant	S10 2-6h #1 (8)	GSM280082 WT ovaries (18-29nt)	GSM343287 Drosophila Toll 10b mutant embryos	S31 s2+48 #1	GSM379055 Flam Mutant	GSM180329 adult bodies (female bodies, male bodies)	S5 imaginal disc	S21 disk #2	GSM239041 fly heads, non beta-eliminated	GSM246084 D. melanogaster adult male heads 454	V018 Kc167 cell	V082 embryo 14-24hr	V024 kc167 cell	S17 3rd inster #1	V026 1182-4H cell	SRR001337 WT_females beta-eliminated	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR010956 Piwi IP in Ago3 heterozygotes	V009 CMEL1	V021 ML-DmD21 cell	SRR032092 mock oxidized	GSM280087 S2cell (AGO2IP)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	OSS8 Drosophila OSS cell small RNA libraries, rep4	V081 embryo 2-6hr	SRR001340 IR beta-eliminated	S33 KC-48 #2	SRR001346 ago2 beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	S30 s2-48 #2	V033 CMEW1 Cl.8+ cell	SRR010955 Aub IP in Ago3 heterozygotes	SRR032094 ago2 knockdown	GSM280088 S2cell (AGO1IP)	V011 Sg4	SRR029033 lacZ knockdown	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR029032 r2d2 knockdown	GSM239052 S2 cells, non beta-eliminated	S25 1st instar #1	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V020 S2R+ cell	SRR029029 dcr-1 knockdown	GSM180335 imaginal discs	S7 12-24hr embryo	S13 6-10h #2 (11)	SRR029028 untreated (mock)	S12 6-10h #1 (10)	SRR010954 Aub trans-heterozygotes, oxidized	SRR029030 dcr-2 knockdown	SRR010959 Ago3 IP in heterozygotes	V001 IR-	SRR010953 Aub heterozygotes, oxidized	V028 CMEW1 Cl.8+ cell	SRR001342 WT_males beta-eliminated	V025 S2R+ cell	S11 2-6h #2 (9)	SRR029031 loqs-ORF knockdown	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM239050 fly heads, beta-eliminated	V067 S2-NP	S26 1st instar #2	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	V002 IR+	V010 MLDmD20c5	V019 GM2 cell	GSM180331 early embryo (2-6)	SRR032093 ago1 knockdown	GSM239051 S2 cells, beta-eliminated	SRR023402 total RNA extracted from NLS-P19 cells	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S14 0-1hr #1 (A)	SRR032095 AGO1 IP dcr2 knockdown	S15 S2 -48 #1	S16 KC -48 #1	GSM180332 mid embryo (6-10)	GSM180333 late embryo (12-24)	SRR023197 RNA Library from S2 control cells	SRR023399 RNA bound by P19 protein	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM180330 very early embryo (0-1)	SRR032096 AGO2 IP dcr2 knockdown	GSM280086 WT ovaries (AGO2IP)	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	GSM180337 tissue culture cells (S2 only)	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM424739 S2 parental
...................................TGAGGTAGTAGGTTGTATAGTA......................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TGAGGTAGTAGGTTGTATAGT.......................................................................	21	1	2157	0	0	0	0	0	0	0	0	230	1474	0	0	0	0	6	0	0	0	1	47	0	0	0	0	340	0	0	0	0	0	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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