Page generated on Fri Oct 15 12:01:12 2010

dme-mir-1




dme-mir-1

View dme-mir-1 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-114056384711172731563080323921656308037273


AATCCAAAACAAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAACTAAAACTG
.............................(((...((..((((((((((((.((((((((.((((((.......))).))).)))))))).))))))))))))....)).)))...........................-36.20
.............(((..(((.((.((..(((...((..((((((((((((.((((((((.((((((.......))).))).)))))))).))))))))))))....)).)))..)).)).)))))).............-39.70
Sense strand
                                                                                                                                            SizeBlastTotalV082 embryo 14-24hrV090 CS  male total RNA  V083 male, one daySRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 V084 female, one dayV081 embryo 2-6hrSRR001345 ago2 non-beta-eliminated V098 dcr-2[L811fsX] ovaryS24 male body #2SRR031703 Total small RNAs from r2d2 homozygous flies V088 r2d2[1] ovary total RNA  V097 CS ovarySRR031697 Total small RNAs from dcr-2 heterozygous flies V001 IR-SRR031692 Total small RNAs from Oregon R SRR029633 total small RNAs from hen1 homozygous flies GSM467729 WT SRR031696_2152 SRR031701 Total small RNAs from r2d2 heterozygous flies SRR031699 Total small RNAs from dcr-2 homozygous flies S28 0-2d pupaeV065 dcr-2[L811fsX], ovary, AGO1IPS19 2-4day pupae #1V002 IR+S29 male head #1V064 ago2[414], ovary, AGO1IPS9 0-1h #3 (7)GSM343287 Drosophila Toll 10b mutant embryos V063 CS,ovary,AGO1IPS12 6-10h #1 (10)S23 female body #2S27 0-1d Pupae (w)GSM467730 r2d2 SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated GSM379059 V089 ago2[414] ovary total RNA  SRR001344 dcr-2 beta-eliminated V066 r2d2[1], ovary, AGO1IPSRR001343 dcr-2 non-beta-eliminated SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S22 female head #1SRR001338 IR non-beta-eliminated GSM467731 loq SRR001347 ago2 untreated GSM379057 Krimp Mutant S17 3rd inster #1SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb S13 6-10h #2 (11)SRR001349 heterozygous dcr-2_untreated SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR001664 homozygous dcr-2_untreated S2 female headGSM379065 Zuc Heterozygote S3 male bodyS10 2-6h #1 (8)SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 S4 female bodyGSM379051 Armi Mutant SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies SRR014277 Ovary_rep1 NA_P GSM379053 Aub Mutant S18 3rd inster #2SRR014275 Ovary_rep1 LK_P GSM379063 Vasa Heterozygote GSM280084 loqs-/- ovaries (18-29nt) SRR014280 Ovary_rep1 w1118_P S35 KC+48 #2SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb GSM379061 Squ Heterozygote SRR014273 Ovary_rep1_Har_P S7 12-24hr embryoS20 2-4day pupae#2GSM379054 Flam Heterozygote GSM379055 Flam Mutant SRR014282 Ovary_rep1 wK_P GSM379066 Zuc Mutant SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM379050 Armi Heterozygote SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 V008 S2-DRSCGSM379058 GSM379064 Vasa Mutant GSM379067 SpnE Mutant GSM379060 SpnE Heterozygote SRR001337 WT_females beta-eliminated S34 KC+48 #1SRR032092 mock oxidized SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies GSM379052 Aub Heterozygote V011 Sg4GSM379062 Squ Mutant V076 ML-DmBG3-C2S25 1st instar #1SRR001348 ago2 oxidized GSM180328 adult heads (female heads, male heads) SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb GSM280083 dcr-2-/- ovaries (18-29nt) GSM379056 Krimp Heterozygote SRR001346 ago2 beta-eliminated GSM180329 adult bodies (female bodies, male bodies) S26 1st instar #2SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies GSM280082 WT ovaries (18-29nt) S1 male headGSM180333 late embryo (12-24) S32 s2+48 #2GSM180332 mid embryo (6-10) GSM180334 larvae: 1st instar and 3rd instars SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR031693_4 GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day S14 0-1hr #1 (A)S8 S2-48,+48, KC-48, +48 mixGSM239041 fly heads, non beta-eliminated S11 2-6h #2 (9)SRR029032 r2d2 knockdown S21 disk #2S5 imaginal discGSM280087 S2cell (AGO2IP) SRR032094 ago2 knockdown S33 KC-48 #2GSM180331 early embryo (2-6) OSS2 Drosophila OSS cell small RNA libraries, rep1 SRR029029 dcr-1 knockdown OSS6 Drosophila OSS cell small RNA libraries, rep2 SRR010959 Ago3 IP in heterozygotes OSS8 Drosophila OSS cell small RNA libraries, rep4 OSS7 Drosophila OSS cell small RNA libraries, rep3 S30 s2-48 #2GSM280085 WT testes (18-24nt) SRR001340 IR beta-eliminated SRR001342 WT_males beta-eliminated SRR029033 lacZ knockdown SRR029030 dcr-2 knockdown SRR010954 Aub trans-heterozygotes, oxidized V033 CMEW1 Cl.8+ cellGSM239052 S2 cells, non beta-eliminated SRR029028 untreated (mock) SRR010956 Piwi IP in Ago3 heterozygotes GSM246084 D. melanogaster adult male heads 454 V009 CMEL1V021 ML-DmD21 cellSRR010955 Aub IP in Ago3 heterozygotes SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR032093 ago1 knockdown V010 MLDmD20c5GSM280088 S2cell (AGO1IP) S16 KC -48 #1GSM180335 imaginal discs SRR010953 Aub heterozygotes, oxidized GSM180330 very early embryo (0-1) V028 CMEW1 Cl.8+ cellV018 Kc167 cellV075 ML-DmBG1-C1S15 S2 -48 #1SRR010960 wt, oxidized S31 s2+48 #1GSM239050 fly heads, beta-eliminated V020 S2R+ cellSRR010952 Ago3 trans-heterozygotes, oxidized V024 kc167 cellV026 1182-4H cellV019 GM2 cellV025 S2R+ cellSRR010951 Ago3 heterozygotes, oxidized SRR029031 loqs-ORF knockdown GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) V067 S2-NPSRR010957 Aub IP in Ago3 trans-heterozygotes SRR023407 RNA bound by NLS-P19 protein SRR032095 AGO1 IP dcr2 knockdown GSM280086 WT ovaries (AGO2IP) SRR023400 total RNA extracted from P19 cells GSM180337 tissue culture cells (S2 only) SRR023402 total RNA extracted from NLS-P19 cells SRR032096 AGO2 IP dcr2 knockdownGSM239051 S2 cells, beta-eliminated GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR023197 RNA Library from S2 control cells GSM424740 S2 pKF63 stably transfected GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM424741 S2 pKF63 transiently transfected GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 SRR023399 RNA bound by P19 protein GSM424739 S2 parental
..............ACCATCCCATATTCAGCCTTTGAGAGTT..................................................................................................2811010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCCATGCTTCCTTGCATTCA...............................................................................2018511030010360002001110050107010000310000000001001010010010200010000100000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCCATGCTTCCTTGCATTCAATA............................................................................2312000000000000000010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCCATGCTTCCTTGCATTCAA..............................................................................211830000000024100002111223010203000370000000106002000900010100020000000000000110000000000000000000010000001000020000000000000000000000100000000000000000000100000000000000000000000000000000000000
.........................................TCCATGCTTCCTTGCATTC................................................................................1917000000002000000000000000000000100000000002000010000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCCATGCTTCCTTGCATTCAAT.............................................................................2211340000000040500203512014020100500111220110000003000000200160300000000100000000420000000000000000000010000000100210000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAATAGT..........................................................................2419000400000000000010000000000000002000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAATAGTTAT.......................................................................2713000000000000000000100000000000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAATAGTT.........................................................................2515000000100000000010000000000000010000000000010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAATAGTTA........................................................................2611000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAATA............................................................................2213842800601890436680048787631075411891037814201672042810888481414003013757214612010538116010421242630026037004000002370096100000000011001530850002365800018163201434419215103822014300000202000101010010000000000000000001000010001000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAATAGTTATATT....................................................................3011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAATAGTTATAT.....................................................................2912000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCA...............................................................................191871000900002797002351535612902201410790025591000000103312106021011220229001301006000020007000000000000003011000021000000300304009300009000000000001000000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAAT.............................................................................2111149300404001091400120132217853120212610341016162171001000101959308111076702001479009022108000038003210000000000000170300000800101053130231711252130045001002640303100000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTC................................................................................18112400211000330000010000060303607000252000000007010010400010300030000100001000000000000000000000000000000000000001000000100000000000000010000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAATAGTTATATTC...................................................................3111000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAATAG...........................................................................231160000000000001000100000000000000004000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CCATGCTTCCTTGCATTCAA..............................................................................20161400000100162160020420345380508602330255461000000002062503135020110713001105000000092000000000000000001013000030100004130020004112102000000120502100000000000000000000000000000000000000000000010000000000000
...........................................CATGCTTCCTTGCATTCAATA............................................................................211228401014101000071102706020301408103279100000020401200617021101220000000400001500210000001000000102000010000000020010200005006000000300000000100000000000000000000000000000000000000000000000000000000
...........................................CATGCTTCCTTGCATTCAAT.............................................................................2016210000101500030011101101000000601000000010020101010000100130000100000000100000000000000000002000010000000000000001100001000000000001000000000000000000000000000000000000000000000000000000000000
...........................................CATGCTTCCTTGCATTCA...............................................................................18114000000000000000000001000400008000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CATGCTTCCTTGCATTCAA..............................................................................19115000000006000000200000010000000000000000000000000400000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
...........................................CATGCTTCCTTGCATTCAATAG...........................................................................2211000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ATGCTTCCTTGCATTCAA..............................................................................1811000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ATGCTTCCTTGCATTCAATA............................................................................2015100000001000000100100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TGCTTCCTTGCATTCAAT.............................................................................1811000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TGCTTCCTTGCATTCAATA............................................................................1912000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GCTTCCTTGCATTCAATA............................................................................1812000000000100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TCAATAGTTATATTCAAGCAT.............................................................2111001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ATAGTTATATTCAAGCATA............................................................1911100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................AAGCATATGGAATGTAAAGAAGTATGGAGCG....................................3111000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................AAGCATATGGAATGTAAAGAAGTATGGAG......................................2912000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AGCATATGGAATGTAAAGAAGTATGGAG......................................2811000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GCATATGGAATGTAAAGAAGTATGGA.......................................2611000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CATATGGAATGTAAAGAAGTATGGAG......................................2613000000000000000010000000000000001000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ATATGGAATGTAAAGAAGTATGGAG......................................2518104010000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ATATGGAATGTAAAGAAGTATGGAGCG....................................2711000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TATGGAATGTAAAGAAGTATGG........................................22119107021012002000000000200000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TATGGAATGTAAAGAAGTATG.........................................2111010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TATGGAATGTAAAGAAGTATGGAG......................................24114411010000300000000100001000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TATGGAATGTAAAGAAGT............................................1811000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TATGGAATGTAAAGAAGTATGGA.......................................231561456288021000030002000000000000100000000000100000000010000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATGGAATGTAAAGAAGTATGGA.......................................22166814262692246292123511351551050293200222311351214122010200100100121000041231271010120003000040001000000000300000110000003000200000000000002100000200000000000000000000000000000000000000000000000000000000000000
...............................................................................ATGGAATGTAAAGAAGTATG.........................................2017030100000000000000000000000200000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATGGAATGTAAAGAAGTATGGAG......................................23126143315132563132393024410112001249116643011115201821311475002011001030103060113010168063521237000027102024010132500000100011101500000010012010010710111121250054328011002300001010000000000200000000000000001000000000000000000000000000000
...............................................................................ATGGAATGTAAAGAAGTATGGAGC.....................................2415000000001000000000000000100000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATGGAATGTAAAGAAGTATGG........................................211106115101860084007100020502330212220021110000000010000000010200000000000000000010000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATGGAATGTAAAGAAGTATGGAGCG....................................2512000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCGAAATCTG.............................3114000000000000000010000000000000002000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCGA...................................251206010000000000000097000000000000000530000000000530000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCGAAATC...............................291133000000000000000079000000000000000370000000000170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCG....................................241271420000000100000001273000000000000000393000000000010440100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCGAAA.................................271175000000000000000083000000000000000730000000000190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGG........................................20155833234788152642524305930025620113588339814264501652846522390582786316524743461091555162322199449049170601198303026540832181157119220864118144105278128697641195543505184236714042557035983188115368315482117242024164152414243271539501326592411801926314019611713243721633200312041421031813390000110120201050111050100080103000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCGAAATCTGGCG..........................3415000000000000000040000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATG.........................................191414982503202349172381498219136606573209897876452173012429251834229181995112122185111039254272881581011501923771231414528412021370211237103353110043410111100065300102310200134400010002104010042001200013700400000000010350100040002000020002200000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCGAAAT................................2813900000000000000002000000000000000010000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAG......................................2215237788985293870633489929418855325065255029122970106784728356777473768636346182364452520684902343556451453995140779395923914035606374253491533708295859469262732817125416261382204024694246942249821440218952054020042181651577616038118801464615149143311543914528135291473212740111721120610325892588848747782884336332782780467310699069646559662956736369593056965596465549444666441043104104392535913490343232663239314130892669289423462542215120681918190415811798193116701603166915111544118714621196123010061011916650624745706690753505609566515510493419368302359287243244233221189211211203193219217316112313212887636259565252480343233222241613134976623430021101100000000000
................................................................................TGGAATGTAAAGAAGTAT..........................................18128073997555659360918214255331143885991182614413171832302144629111012001013571605031221250252240118310400001001110001000000000001000002880040000542000001215010030000300100300020000440000000000000090000110001000010000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCGAA..................................2611930000000000000000660000000000000001090000000000180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGC.....................................2311058099811835063142551161576059549048458445522984522127192240413327331813442215812434325423172924421181154772836208601941152313391496241214951017571411123798541779385471320111343124135351311313112520131020200000000000410001111000000001300000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGA.......................................21129385725359521903875013415253423182318110999860273813410752650951824407050412732386855333282327733073334110724413769373010363012222310022607836796791185156664814971255991994153973513395071106157280128549130082848210263162974057351812823481656352682193112486766818923617350011613814015222310012315011115010311895334111141148981432278812813117871456415741106701613613114554766625822321536311612204631142303952183418269651222413002381230312112022000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCGAAATCTGGC...........................33111000000000000000020000000000000007000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGA.........................3516000000000000000020000000000000002000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGAATGTAAAGAAGTATGGAGCGAAATCT..............................3015000000000000000010000000000000002000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GGAATGTAAAGAAGTATGG........................................191126109280121170330571171130110000010002110010000192000000110000000200000000000000000000000011001000002000000000000002000000000000000040000000000000000000000000000000000000000000000000000000000000
.................................................................................GGAATGTAAAGAAGTATGGAGC.....................................22114904315320121100222741000000000000071100000011676010010101000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GGAATGTAAAGAAGTATG.........................................18124010010000000102100210000000000000000000000000000010000000000400000000000000000000000000002000001000000030000001100000000000000100000000010000000000000000000000000000000000000000000000000000
.................................................................................GGAATGTAAAGAAGTATGGAGCGA...................................2416000000000000000010000000000000001000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GGAATGTAAAGAAGTATGGAG......................................21112147725453459511255239860921161165436385234572591409535637447633175258429252352894340293178178101115917179193112922317211401340157141402551911111215456911354121776131447114527446332830414100627201310111114011091400300021003100041010210000003000100010000100000000000001000000000000000000000
.................................................................................GGAATGTAAAGAAGTATGGAGCGAA..................................2513000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GGAATGTAAAGAAGTATGGAGCG....................................231990000000000000000900000000000000060000000000840000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GGAATGTAAAGAAGTATGGA.......................................2018121715291725423581360769038592450563580210408210525661030100512172412002001520211110400030001000120000000000000001000002000100000010000100000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................GAATGTAAAGAAGTATGGAGC.....................................211470302001000001002100000000000000000000000002226000010000000000000000000000000000000000000000000010000000000000002300000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GAATGTAAAGAAGTATGGAGCG....................................22112700000100000000004000000000000000300000000001190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GAATGTAAAGAAGTATGGA.......................................1911561476101600001101521170911002310200120111000002000020110010021100010000010000000001000000000000005000100000000010000001100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GAATGTAAAGAAGTATGGAG......................................20123152479113628088726817793178366562610241101423402571581681148473312431421910239115157869297314430117403319050320152660312302310103121424114000613100102946311000001000000001000000000100200000000000000000000000000000000000000000000000
..................................................................................GAATGTAAAGAAGTATGG........................................18130201030000102300900100000000020000000000000000010000000001000010000000000000000000000000001000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GAATGTAAAGAAGTATGGAGCGA...................................2314000000000000000000000000000000001000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AATGTAAAGAAGTATGGAG......................................19173312427741145741184976357131001852915340200380010004000090000607003001003411261023130311000100001002010002010330003200001000000100000000000000061000000000000000000000000000000000000000000000000000000000000
...................................................................................AATGTAAAGAAGTATGGAGC.....................................2011000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AATGTAAAGAAGTATGGA.......................................18163737930010202211101210100030040000000002000000010000000001000600010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ATGTAAAGAAGTATGGAG......................................1812324482109324619215114336811822412516101922633831134022046000010610170313121215240048172101000631101015001200410001200002202140003000212000000300000000000036001004000000100000000000000000000000000000000000000000000000000
....................................................................................ATGTAAAGAAGTATGGAGCGA...................................2111100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ATGTAAAGAAGTATGGAGC.....................................1912100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGTAAAGAAGTATGGAGC.....................................1811000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GTATGGAGCGAAATCTGGCGAGA.......................2311000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................AGCGAAATCTGGCGAGACAT....................2012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                            SizeBlastTotalV082 embryo 14-24hrV090 CS  male total RNA  V083 male, one daySRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 V084 female, one dayV081 embryo 2-6hrSRR001345 ago2 non-beta-eliminated V098 dcr-2[L811fsX] ovaryS24 male body #2SRR031703 Total small RNAs from r2d2 homozygous flies V088 r2d2[1] ovary total RNA  V097 CS ovarySRR031697 Total small RNAs from dcr-2 heterozygous flies V001 IR-SRR031692 Total small RNAs from Oregon R SRR029633 total small RNAs from hen1 homozygous flies GSM467729 WT SRR031696_2152 SRR031701 Total small RNAs from r2d2 heterozygous flies SRR031699 Total small RNAs from dcr-2 homozygous flies S28 0-2d pupaeV065 dcr-2[L811fsX], ovary, AGO1IPS19 2-4day pupae #1V002 IR+S29 male head #1V064 ago2[414], ovary, AGO1IPS9 0-1h #3 (7)GSM343287 Drosophila Toll 10b mutant embryos V063 CS,ovary,AGO1IPS12 6-10h #1 (10)S23 female body #2S27 0-1d Pupae (w)GSM467730 r2d2 SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated GSM379059 V089 ago2[414] ovary total RNA  SRR001344 dcr-2 beta-eliminated V066 r2d2[1], ovary, AGO1IPSRR001343 dcr-2 non-beta-eliminated SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S22 female head #1SRR001338 IR non-beta-eliminated GSM467731 loq SRR001347 ago2 untreated GSM379057 Krimp Mutant S17 3rd inster #1SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb S13 6-10h #2 (11)SRR001349 heterozygous dcr-2_untreated SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR001664 homozygous dcr-2_untreated S2 female headGSM379065 Zuc Heterozygote S3 male bodyS10 2-6h #1 (8)SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 S4 female bodyGSM379051 Armi Mutant SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies SRR014277 Ovary_rep1 NA_P GSM379053 Aub Mutant S18 3rd inster #2SRR014275 Ovary_rep1 LK_P GSM379063 Vasa Heterozygote GSM280084 loqs-/- ovaries (18-29nt) SRR014280 Ovary_rep1 w1118_P S35 KC+48 #2SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb GSM379061 Squ Heterozygote SRR014273 Ovary_rep1_Har_P S7 12-24hr embryoS20 2-4day pupae#2GSM379054 Flam Heterozygote GSM379055 Flam Mutant SRR014282 Ovary_rep1 wK_P GSM379066 Zuc Mutant SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM379050 Armi Heterozygote SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 V008 S2-DRSCGSM379058 GSM379064 Vasa Mutant GSM379067 SpnE Mutant GSM379060 SpnE Heterozygote SRR001337 WT_females beta-eliminated S34 KC+48 #1SRR032092 mock oxidized SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies GSM379052 Aub Heterozygote V011 Sg4GSM379062 Squ Mutant V076 ML-DmBG3-C2S25 1st instar #1SRR001348 ago2 oxidized GSM180328 adult heads (female heads, male heads) SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb GSM280083 dcr-2-/- ovaries (18-29nt) GSM379056 Krimp Heterozygote SRR001346 ago2 beta-eliminated GSM180329 adult bodies (female bodies, male bodies) S26 1st instar #2SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies GSM280082 WT ovaries (18-29nt) S1 male headGSM180333 late embryo (12-24) S32 s2+48 #2GSM180332 mid embryo (6-10) GSM180334 larvae: 1st instar and 3rd instars SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR031693_4 GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day S14 0-1hr #1 (A)S8 S2-48,+48, KC-48, +48 mixGSM239041 fly heads, non beta-eliminated S11 2-6h #2 (9)SRR029032 r2d2 knockdown S21 disk #2S5 imaginal discGSM280087 S2cell (AGO2IP) SRR032094 ago2 knockdown S33 KC-48 #2GSM180331 early embryo (2-6) OSS2 Drosophila OSS cell small RNA libraries, rep1 SRR029029 dcr-1 knockdown OSS6 Drosophila OSS cell small RNA libraries, rep2 SRR010959 Ago3 IP in heterozygotes OSS8 Drosophila OSS cell small RNA libraries, rep4 OSS7 Drosophila OSS cell small RNA libraries, rep3 S30 s2-48 #2GSM280085 WT testes (18-24nt) SRR001340 IR beta-eliminated SRR001342 WT_males beta-eliminated SRR029033 lacZ knockdown SRR029030 dcr-2 knockdown SRR010954 Aub trans-heterozygotes, oxidized V033 CMEW1 Cl.8+ cellGSM239052 S2 cells, non beta-eliminated SRR029028 untreated (mock) SRR010956 Piwi IP in Ago3 heterozygotes GSM246084 D. melanogaster adult male heads 454 V009 CMEL1V021 ML-DmD21 cellSRR010955 Aub IP in Ago3 heterozygotes SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR032093 ago1 knockdown V010 MLDmD20c5GSM280088 S2cell (AGO1IP) S16 KC -48 #1GSM180335 imaginal discs SRR010953 Aub heterozygotes, oxidized GSM180330 very early embryo (0-1) V028 CMEW1 Cl.8+ cellV018 Kc167 cellV075 ML-DmBG1-C1S15 S2 -48 #1SRR010960 wt, oxidized S31 s2+48 #1GSM239050 fly heads, beta-eliminated V020 S2R+ cellSRR010952 Ago3 trans-heterozygotes, oxidized V024 kc167 cellV026 1182-4H cellV019 GM2 cellV025 S2R+ cellSRR010951 Ago3 heterozygotes, oxidized SRR029031 loqs-ORF knockdown GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) V067 S2-NPSRR010957 Aub IP in Ago3 trans-heterozygotes SRR023407 RNA bound by NLS-P19 protein SRR032095 AGO1 IP dcr2 knockdown GSM280086 WT ovaries (AGO2IP) SRR023400 total RNA extracted from P19 cells GSM180337 tissue culture cells (S2 only) SRR023402 total RNA extracted from NLS-P19 cells SRR032096 AGO2 IP dcr2 knockdownGSM239051 S2 cells, beta-eliminated GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR023197 RNA Library from S2 control cells GSM424740 S2 pKF63 stably transfected GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM424741 S2 pKF63 transiently transfected GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 SRR023399 RNA bound by P19 protein GSM424739 S2 parental
....................................AGAGTTCCATGCTTCCTTGCAT..................................................................................2211000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000