Page generated on Fri Oct 15 12:01:25 2010

dme-mir-10



dme-mir-10

View dme-mir-10 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-10	126	691971	3	1	439854	228	251876		15	18	439854	251876

GCGACTGTTCCTCATCAGTTTGCTCCACGTCTACCCTGTAGATCCGAATTTGTTTTATACTAGCTTTAAGGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTTCAATATCCATCGAAAAAGTGTTG
........................(((((...(((((.((((.(((((((((((((............))))))))))))).)))).)).)))...))))).........................-31.00
(((((((........))).)))).(((((...(((((.((((.(((((((((((((............))))))))))))).)))).)).)))...)))))..((((((...........))))))-37.90
Sense strand

	Size	Blast	Total	V081 embryo 2-6hr	V082 embryo 14-24hr	V090 CS  male total RNA	V001 IR-	V002 IR+	V021 ML-DmD21 cell	V083 male, one day	V076 ML-DmBG3-C2	V084 female, one day	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V098 dcr-2[L811fsX] ovary	V097 CS ovary	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031696_2152	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR029633 total small RNAs from hen1 homozygous flies	V063 CS,ovary,AGO1IP	V064 ago2[414], ovary, AGO1IP	S12 6-10h #1 (10)	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031692 Total small RNAs from Oregon R	S19 2-4day pupae #1	S28 0-2d pupae	S10 2-6h #1 (8)	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S13 6-10h #2 (11)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S24 male body #2	V089 ago2[414] ovary total RNA	S9 0-1h #3 (7)	V026 1182-4H cell	V066 r2d2[1], ovary, AGO1IP	GSM467729 WT	GSM467730 r2d2	V088 r2d2[1] ovary total RNA	SRR031699 Total small RNAs from dcr-2 homozygous flies	S7 12-24hr embryo	S29 male head #1	S27 0-1d Pupae (w)	GSM343287 Drosophila Toll 10b mutant embryos	S23 female body #2	SRR001345 ago2 non-beta-eliminated	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR001338 IR non-beta-eliminated	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S17 3rd inster #1	S11 2-6h #2 (9)	SRR014275 Ovary_rep1 LK_P	SRR010954 Aub trans-heterozygotes, oxidized	SRR001349 heterozygous dcr-2_untreated	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM467731 loq	S22 female head #1	S21 disk #2	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S5 imaginal disc	S25 1st instar #1	GSM180333 late embryo (12-24)	GSM379061 Squ Heterozygote	S3 male body	S14 0-1hr #1 (A)	S35 KC+48 #2	S4 female body	SRR001347 ago2 untreated	SRR001664 homozygous dcr-2_untreated	S26 1st instar #2	SRR031693_4	SRR001343 dcr-2 non-beta-eliminated	GSM280084 loqs-/- ovaries (18-29nt)	SRR001344 dcr-2 beta-eliminated	S34 KC+48 #1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR001341 WT_males non-beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR014273 Ovary_rep1_Har_P	S2 female head	SRR010953 Aub heterozygotes, oxidized	GSM379051 Armi Mutant	SRR014280 Ovary_rep1 w1118_P	V033 CMEW1 Cl.8+ cell	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379066 Zuc Mutant	GSM180331 early embryo (2-6)	GSM379059	GSM180334 larvae: 1st instar and 3rd instars	SRR014277 Ovary_rep1 NA_P	GSM180332 mid embryo (6-10)	GSM379050 Armi Heterozygote	S18 3rd inster #2	GSM280085 WT testes (18-24nt)	V009 CMEL1	GSM379065 Zuc Heterozygote	GSM379064 Vasa Mutant	GSM379063 Vasa Heterozygote	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S20 2-4day pupae#2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM180329 adult bodies (female bodies, male bodies)	GSM379067 SpnE Mutant	SRR032092 mock oxidized	GSM379060 SpnE Heterozygote	S32 s2+48 #2	S33 KC-48 #2	GSM379057 Krimp Mutant	V008 S2-DRSC	SRR001348 ago2 oxidized	GSM379058	S1 male head	GSM180335 imaginal discs	GSM379055 Flam Mutant	GSM180328 adult heads (female heads, male heads)	V028 CMEW1 Cl.8+ cell	SRR010959 Ago3 IP in heterozygotes	SRR014282 Ovary_rep1 wK_P	SRR010955 Aub IP in Ago3 heterozygotes	S8 S2-48,+48, KC-48, +48 mix	GSM379062 Squ Mutant	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM280087 S2cell (AGO2IP)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM180330 very early embryo (0-1)	SRR010956 Piwi IP in Ago3 heterozygotes	GSM379052 Aub Heterozygote	GSM280082 WT ovaries (18-29nt)	SRR001337 WT_females beta-eliminated	GSM379056 Krimp Heterozygote	SRR001346 ago2 beta-eliminated	V011 Sg4	GSM239041 fly heads, non beta-eliminated	V024 kc167 cell	SRR032094 ago2 knockdown	GSM239052 S2 cells, non beta-eliminated	S30 s2-48 #2	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM379054 Flam Heterozygote	SRR029029 dcr-1 knockdown	GSM379053 Aub Mutant	SRR010960 wt, oxidized	SRR029032 r2d2 knockdown	V018 Kc167 cell	SRR032095 AGO1 IP dcr2 knockdown	S16 KC -48 #1	SRR029033 lacZ knockdown	SRR029030 dcr-2 knockdown	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR029028 untreated (mock)	GSM239051 S2 cells, beta-eliminated	SRR001340 IR beta-eliminated	S31 s2+48 #1	OSS2 Drosophila OSS cell small RNA libraries, rep1	V075 ML-DmBG1-C1	V025 S2R+ cell	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR032093 ago1 knockdown	SRR010951 Ago3 heterozygotes, oxidized	V019 GM2 cell	SRR001342 WT_males beta-eliminated	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM246084 D. melanogaster adult male heads 454	SRR032096 AGO2 IP dcr2 knockdown	SRR029031 loqs-ORF knockdown	GSM280088 S2cell (AGO1IP)	V010 MLDmD20c5	V020 S2R+ cell	SRR023402 total RNA extracted from NLS-P19 cells	GSM239050 fly heads, beta-eliminated	S15 S2 -48 #1	V067 S2-NP	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	GSM180337 tissue culture cells (S2 only)	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM424741 S2 pKF63 transiently transfected	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental
.....TGTTCCTCATCAGTTTGCTC.....................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TCTACCCTGTAGATCCGAATTTG..........................................................................	23	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TACCCTGTAGATCCGAATTTGTT........................................................................	23	1	113	27	13	9	6	7	4	6	5	2	0	3	3	2	0	0	0	9	0	0	2	0	1	2	1	0	0	0	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TACCCTGTAGATCCGAATTTGT.........................................................................	22	1	407	94	58	17	27	19	11	9	12	12	4	7	3	4	2	1	1	6	3	1	1	7	2	3	2	4	0	5	1	2	0	1	0	1	1	1	0	0	1	0	0	6	2	0	2	0	0	0	0	0	0	0	0	0	1	12	0	0	0	0	1	1	0	0	0	1	1	0	1	0	2	0	1	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	20	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	0	0	0	0	0	1	3	5	0	0	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TACCCTGTAGATCCGAATTTGTTTT......................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TACCCTGTAGATCCGAAT.............................................................................	18	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TACCCTGTAGATCCGAATTTGTTT.......................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TACCCTGTAGATCCGAATTT...........................................................................	20	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TACCCTGTAGATCCGAATTTG..........................................................................	21	1	20	0	1	1	2	2	2	1	2	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................ACCCTGTAGATCCGAATTTGTT........................................................................	22	1	404108	104894	74729	28729	18430	19286	19760	13867	13609	10278	15905	10779	9909	7837	6490	2466	2788	4381	1161	3838	3550	1222	3201	1092	1031	446	896	1025	846	1117	3078	293	2096	202	1838	1591	156	89	1260	349	168	160	168	147	131	503	986	206	379	78	174	408	2	30	374	286	24	25	57	315	171	59	100	63	270	33	84	24	44	45	47	82	132	155	114	113	16	202	124	256	124	132	14	4	130	152	111	159	108	40	88	10	106	22	128	14	7	116	108	106	81	7	10	47	6	66	53	61	9	15	47	42	3	51	11	7	51	5	57	36	45	15	4	32	25	27	22	7	16	23	21	19	23	16	16	11	18	10	6	0	0	19	10	12	0	9	11	15	2	14	10	4	0	0	2	0	2	4	6	3	2	4	0	2	1	0	0	0	3	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................ACCCTGTAGATCCGAATTTGT.........................................................................	21	1	28368	1615	3267	3997	775	840	1344	2090	3423	1499	151	421	832	714	286	638	823	577	346	470	383	23	384	330	213	99	157	10	145	55	138	75	177	38	160	215	107	88	96	80	17	86	81	50	53	64	9	81	45	25	1	48	6	13	23	77	32	34	18	14	17	13	11	6	10	15	4	6	19	9	15	8	17	24	14	23	7	8	8	16	8	20	10	1	11	12	7	7	4	1	6	1	8	1	8	8	0	4	4	7	3	1	4	5	2	1	0	3	0	2	2	10	1	4	7	3	6	0	4	4	0	5	1	1	7	4	1	0	1	4	2	3	1	4	3	1	3	10	0	0	2	0	0	2	1	0	2	3	0	0	0	1	0	0	0	0	1	0	1	2	0	0	0	1	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................AATTCGGTTCTAGAGAGG..................................	18	1	5	0	0	0	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AATTCGGTTCTAGAGAGGTT................................	20	1	19	0	3	2	1	4	0	1	0	1	0	1	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AATTCGGTTCTAGAGAGGT.................................	19	1	3	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AATTCGGTTCTAGAGAGGTTT...............................	21	1	71	6	9	4	7	5	0	4	1	2	0	0	0	0	1	1	3	1	0	5	0	0	0	0	3	1	1	4	0	0	0	0	0	1	0	0	0	1	0	2	1	1	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATTCGGTTCTAGAGAGGT.................................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATTCGGTTCTAGAGAGGTT................................	19	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATTCGGTTCTAGAGAGGTTT...............................	20	1	73	11	15	2	4	0	1	2	1	0	0	0	3	0	0	0	1	0	6	3	0	0	0	1	3	0	1	0	7	1	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TTCGGTTCTAGAGAGGTT................................	18	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TTCGGTTCTAGAGAGGTTT...............................	19	1	22	0	3	1	2	1	0	1	0	0	0	0	1	0	0	1	1	1	1	0	0	0	0	0	0	2	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TCGGTTCTAGAGAGGTTT...............................	18	1	13	0	2	1	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V081 embryo 2-6hr	V082 embryo 14-24hr	V090 CS  male total RNA	V001 IR-	V002 IR+	V021 ML-DmD21 cell	V083 male, one day	V076 ML-DmBG3-C2	V084 female, one day	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V098 dcr-2[L811fsX] ovary	V097 CS ovary	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031696_2152	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR029633 total small RNAs from hen1 homozygous flies	V063 CS,ovary,AGO1IP	V064 ago2[414], ovary, AGO1IP	S12 6-10h #1 (10)	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031692 Total small RNAs from Oregon R	S19 2-4day pupae #1	S28 0-2d pupae	S10 2-6h #1 (8)	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S13 6-10h #2 (11)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S24 male body #2	V089 ago2[414] ovary total RNA	S9 0-1h #3 (7)	V026 1182-4H cell	V066 r2d2[1], ovary, AGO1IP	GSM467729 WT	GSM467730 r2d2	V088 r2d2[1] ovary total RNA	SRR031699 Total small RNAs from dcr-2 homozygous flies	S7 12-24hr embryo	S29 male head #1	S27 0-1d Pupae (w)	GSM343287 Drosophila Toll 10b mutant embryos	S23 female body #2	SRR001345 ago2 non-beta-eliminated	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR001338 IR non-beta-eliminated	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S17 3rd inster #1	S11 2-6h #2 (9)	SRR014275 Ovary_rep1 LK_P	SRR010954 Aub trans-heterozygotes, oxidized	SRR001349 heterozygous dcr-2_untreated	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM467731 loq	S22 female head #1	S21 disk #2	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S5 imaginal disc	S25 1st instar #1	GSM180333 late embryo (12-24)	GSM379061 Squ Heterozygote	S3 male body	S14 0-1hr #1 (A)	S35 KC+48 #2	S4 female body	SRR001347 ago2 untreated	SRR001664 homozygous dcr-2_untreated	S26 1st instar #2	SRR031693_4	SRR001343 dcr-2 non-beta-eliminated	GSM280084 loqs-/- ovaries (18-29nt)	SRR001344 dcr-2 beta-eliminated	S34 KC+48 #1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR001341 WT_males non-beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR014273 Ovary_rep1_Har_P	S2 female head	SRR010953 Aub heterozygotes, oxidized	GSM379051 Armi Mutant	SRR014280 Ovary_rep1 w1118_P	V033 CMEW1 Cl.8+ cell	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379066 Zuc Mutant	GSM180331 early embryo (2-6)	GSM379059	GSM180334 larvae: 1st instar and 3rd instars	SRR014277 Ovary_rep1 NA_P	GSM180332 mid embryo (6-10)	GSM379050 Armi Heterozygote	S18 3rd inster #2	GSM280085 WT testes (18-24nt)	V009 CMEL1	GSM379065 Zuc Heterozygote	GSM379064 Vasa Mutant	GSM379063 Vasa Heterozygote	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S20 2-4day pupae#2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM180329 adult bodies (female bodies, male bodies)	GSM379067 SpnE Mutant	SRR032092 mock oxidized	GSM379060 SpnE Heterozygote	S32 s2+48 #2	S33 KC-48 #2	GSM379057 Krimp Mutant	V008 S2-DRSC	SRR001348 ago2 oxidized	GSM379058	S1 male head	GSM180335 imaginal discs	GSM379055 Flam Mutant	GSM180328 adult heads (female heads, male heads)	V028 CMEW1 Cl.8+ cell	SRR010959 Ago3 IP in heterozygotes	SRR014282 Ovary_rep1 wK_P	SRR010955 Aub IP in Ago3 heterozygotes	S8 S2-48,+48, KC-48, +48 mix	GSM379062 Squ Mutant	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM280087 S2cell (AGO2IP)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM180330 very early embryo (0-1)	SRR010956 Piwi IP in Ago3 heterozygotes	GSM379052 Aub Heterozygote	GSM280082 WT ovaries (18-29nt)	SRR001337 WT_females beta-eliminated	GSM379056 Krimp Heterozygote	SRR001346 ago2 beta-eliminated	V011 Sg4	GSM239041 fly heads, non beta-eliminated	V024 kc167 cell	SRR032094 ago2 knockdown	GSM239052 S2 cells, non beta-eliminated	S30 s2-48 #2	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM379054 Flam Heterozygote	SRR029029 dcr-1 knockdown	GSM379053 Aub Mutant	SRR010960 wt, oxidized	SRR029032 r2d2 knockdown	V018 Kc167 cell	SRR032095 AGO1 IP dcr2 knockdown	S16 KC -48 #1	SRR029033 lacZ knockdown	SRR029030 dcr-2 knockdown	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR029028 untreated (mock)	GSM239051 S2 cells, beta-eliminated	SRR001340 IR beta-eliminated	S31 s2+48 #1	OSS2 Drosophila OSS cell small RNA libraries, rep1	V075 ML-DmBG1-C1	V025 S2R+ cell	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR032093 ago1 knockdown	SRR010951 Ago3 heterozygotes, oxidized	V019 GM2 cell	SRR001342 WT_males beta-eliminated	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM246084 D. melanogaster adult male heads 454	SRR032096 AGO2 IP dcr2 knockdown	SRR029031 loqs-ORF knockdown	GSM280088 S2cell (AGO1IP)	V010 MLDmD20c5	V020 S2R+ cell	SRR023402 total RNA extracted from NLS-P19 cells	GSM239050 fly heads, beta-eliminated	S15 S2 -48 #1	V067 S2-NP	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	GSM180337 tissue culture cells (S2 only)	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM424741 S2 pKF63 transiently transfected	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental
...............................TACCCTGTAGATCCGAATTT...........................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TTCGGTTCTAGAGAGGTTTG..............................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................GTTCTAGAGAGGTTTGTGTGGTTCA.....................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0