Page generated on Fri Oct 15 12:01:42 2010

dme-mir-100



dme-mir-100

View dme-mir-100 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-100	149	73903	3		68673		5222		11	17	68673	5222

GAAATGGTGCATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACAAATCGAAAA
..........................((((.(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).))))............................................-27.10
..((((((.((((......)))).)))))).(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).............(((((((.(....))))))))...............-39.60
Sense strand

	Size	Blast	Total	SRR031696_2152	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031692 Total small RNAs from Oregon R	SRR001345 ago2 non-beta-eliminated	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V076 ML-DmBG3-C2	S29 male head #1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001338 IR non-beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	SRR031693_4	SRR001344 dcr-2 beta-eliminated	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V097 CS ovary	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	V098 dcr-2[L811fsX] ovary	S27 0-1d Pupae (w)	S24 male body #2	V083 male, one day	V090 CS  male total RNA	S28 0-2d pupae	V075 ML-DmBG1-C1	S22 female head #1	GSM467730 r2d2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V063 CS,ovary,AGO1IP	GSM467729 WT	V088 r2d2[1] ovary total RNA	S35 KC+48 #2	V084 female, one day	SRR014275 Ovary_rep1 LK_P	V064 ago2[414], ovary, AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR001349 heterozygous dcr-2_untreated	SRR001664 homozygous dcr-2_untreated	SRR001347 ago2 untreated	GSM280085 WT testes (18-24nt)	SRR014277 Ovary_rep1 NA_P	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S23 female body #2	GSM379065 Zuc Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014273 Ovary_rep1_Har_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379060 SpnE Heterozygote	GSM379064 Vasa Mutant	GSM379061 Squ Heterozygote	V089 ago2[414] ovary total RNA	GSM379057 Krimp Mutant	GSM379056 Krimp Heterozygote	GSM379051 Armi Mutant	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379052 Aub Heterozygote	GSM379066 Zuc Mutant	GSM239050 fly heads, beta-eliminated	GSM379063 Vasa Heterozygote	SRR001337 WT_females beta-eliminated	S20 2-4day pupae#2	GSM379059	S18 3rd inster #2	S34 KC+48 #1	GSM379058	GSM379062 Squ Mutant	GSM379050 Armi Heterozygote	SRR014280 Ovary_rep1 w1118_P	V066 r2d2[1], ovary, AGO1IP	GSM467731 loq	S2 female head	GSM379054 Flam Heterozygote	S9 0-1h #3 (7)	GSM379053 Aub Mutant	SRR014282 Ovary_rep1 wK_P	GSM280084 loqs-/- ovaries (18-29nt)	GSM239041 fly heads, non beta-eliminated	GSM180328 adult heads (female heads, male heads)	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR010959 Ago3 IP in heterozygotes	S32 s2+48 #2	SRR001346 ago2 beta-eliminated	GSM379067 SpnE Mutant	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM239052 S2 cells, non beta-eliminated	GSM379055 Flam Mutant	SRR010954 Aub trans-heterozygotes, oxidized	S19 2-4day pupae #1	OSS7 Drosophila OSS cell small RNA libraries, rep3	S4 female body	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM280082 WT ovaries (18-29nt)	V024 kc167 cell	S1 male head	S8 S2-48,+48, KC-48, +48 mix	GSM239051 S2 cells, beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	SRR001348 ago2 oxidized	V018 Kc167 cell	S21 disk #2	SRR010958 Piwi IP in Ago3 trans-heterozygotes	V009 CMEL1	SRR010956 Piwi IP in Ago3 heterozygotes	S3 male body	S5 imaginal disc	SRR010953 Aub heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	V008 S2-DRSC	SRR001340 IR beta-eliminated	V026 1182-4H cell	S17 3rd inster #1	S10 2-6h #1 (8)	S31 s2+48 #1	GSM180334 larvae: 1st instar and 3rd instars	SRR010960 wt, oxidized	SRR029030 dcr-2 knockdown	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	V028 CMEW1 Cl.8+ cell	SRR010955 Aub IP in Ago3 heterozygotes	V033 CMEW1 Cl.8+ cell	V021 ML-DmD21 cell	SRR029028 untreated (mock)	V081 embryo 2-6hr	GSM280087 S2cell (AGO2IP)	SRR032094 ago2 knockdown	GSM180335 imaginal discs	V082 embryo 14-24hr	S33 KC-48 #2	V011 Sg4	V020 S2R+ cell	SRR029031 loqs-ORF knockdown	S7 12-24hr embryo	S13 6-10h #2 (11)	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR029032 r2d2 knockdown	S30 s2-48 #2	V067 S2-NP	SRR010951 Ago3 heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	S26 1st instar #2	GSM180333 late embryo (12-24)	V002 IR+	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM280088 S2cell (AGO1IP)	GSM180331 early embryo (2-6)	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	V001 IR-	S12 6-10h #1 (10)	S11 2-6h #2 (9)	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	S16 KC -48 #1	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	V010 MLDmD20c5	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR032095 AGO1 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	S25 1st instar #1	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental	SRR032093 ago1 knockdown
....................ATGGACCATTAACAGAAACCCGTAAATCCG...................................................................................................	30	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AGAAACCCGTAAATCCGAACTT..............................................................................................	22	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AAACCCGTAAATCCGAACTTG.............................................................................................	21	1	31	2	4	5	3	3	1	1	1	0	0	0	0	0	0	0	0	1	0	0	3	3	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AAACCCGTAAATCCGAACTT..............................................................................................	20	1	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AAACCCGTAAATCCGAACTTGT............................................................................................	22	1	257	54	15	28	17	16	2	13	7	0	13	6	16	0	3	1	0	0	0	4	0	0	6	1	0	7	4	0	2	0	1	3	1	1	2	0	1	0	2	4	0	2	3	0	1	0	2	4	2	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AAACCCGTAAATCCGAACT...............................................................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AAACCCGTAAATCCGAAC................................................................................................	18	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AAACCCGTAAATCCGAACTTGTGC..........................................................................................	24	1	3	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AAACCCGTAAATCCGAACTTGTG...........................................................................................	23	1	451	80	39	42	28	27	41	18	18	0	8	2	9	18	12	10	0	8	0	1	10	10	1	2	6	0	2	5	0	2	4	2	0	2	2	6	1	0	0	0	1	0	3	0	1	1	2	3	0	0	0	0	2	0	0	0	0	1	0	1	0	3	0	1	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	2	0	0	3	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AACCCGTAAATCCGAACTTGTGCT.........................................................................................	24	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AACCCGTAAATCCGAACTT..............................................................................................	19	1	105	0	65	6	1	4	0	0	0	1	0	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	2	0	1	0	0	4	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................AAGACCGGCATTATGGGAGTCT...................................................	22	1	20	0	1	2	0	0	0	0	0	0	3	0	7	0	0	0	0	0	0	0	0	0	1	0	0	1	1	2	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AAGACCGGCATTATGGGAGTC....................................................	21	1	33	3	1	2	0	2	0	0	0	9	4	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AGACCGGCATTATGGGAGTC....................................................	20	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AGACCGGCATTATGGGAG......................................................	18	1	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AGACCGGCATTATGGGAGTCTGT.................................................	23	1	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AGACCGGCATTATGGGAGT.....................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GACCGGCATTATGGGAGT.....................................................	18	1	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GACCGGCATTATGGGAGTC....................................................	19	1	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GACCGGCATTATGGGAGTCTGT.................................................	22	1	14	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	1	0	0	2	0	0	2	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACCGGCATTATGGGAGTC....................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TGGGAGTCTGTCAATGCAAACAACTGG.................................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR031696_2152	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031692 Total small RNAs from Oregon R	SRR001345 ago2 non-beta-eliminated	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V076 ML-DmBG3-C2	S29 male head #1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001338 IR non-beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	SRR031693_4	SRR001344 dcr-2 beta-eliminated	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V097 CS ovary	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	V098 dcr-2[L811fsX] ovary	S27 0-1d Pupae (w)	S24 male body #2	V083 male, one day	V090 CS  male total RNA	S28 0-2d pupae	V075 ML-DmBG1-C1	S22 female head #1	GSM467730 r2d2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V063 CS,ovary,AGO1IP	GSM467729 WT	V088 r2d2[1] ovary total RNA	S35 KC+48 #2	V084 female, one day	SRR014275 Ovary_rep1 LK_P	V064 ago2[414], ovary, AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR001349 heterozygous dcr-2_untreated	SRR001664 homozygous dcr-2_untreated	SRR001347 ago2 untreated	GSM280085 WT testes (18-24nt)	SRR014277 Ovary_rep1 NA_P	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S23 female body #2	GSM379065 Zuc Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014273 Ovary_rep1_Har_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379060 SpnE Heterozygote	GSM379064 Vasa Mutant	GSM379061 Squ Heterozygote	V089 ago2[414] ovary total RNA	GSM379057 Krimp Mutant	GSM379056 Krimp Heterozygote	GSM379051 Armi Mutant	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379052 Aub Heterozygote	GSM379066 Zuc Mutant	GSM239050 fly heads, beta-eliminated	GSM379063 Vasa Heterozygote	SRR001337 WT_females beta-eliminated	S20 2-4day pupae#2	GSM379059	S18 3rd inster #2	S34 KC+48 #1	GSM379058	GSM379062 Squ Mutant	GSM379050 Armi Heterozygote	SRR014280 Ovary_rep1 w1118_P	V066 r2d2[1], ovary, AGO1IP	GSM467731 loq	S2 female head	GSM379054 Flam Heterozygote	S9 0-1h #3 (7)	GSM379053 Aub Mutant	SRR014282 Ovary_rep1 wK_P	GSM280084 loqs-/- ovaries (18-29nt)	GSM239041 fly heads, non beta-eliminated	GSM180328 adult heads (female heads, male heads)	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR010959 Ago3 IP in heterozygotes	S32 s2+48 #2	SRR001346 ago2 beta-eliminated	GSM379067 SpnE Mutant	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM239052 S2 cells, non beta-eliminated	GSM379055 Flam Mutant	SRR010954 Aub trans-heterozygotes, oxidized	S19 2-4day pupae #1	OSS7 Drosophila OSS cell small RNA libraries, rep3	S4 female body	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM280082 WT ovaries (18-29nt)	V024 kc167 cell	S1 male head	S8 S2-48,+48, KC-48, +48 mix	GSM239051 S2 cells, beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	SRR001348 ago2 oxidized	V018 Kc167 cell	S21 disk #2	SRR010958 Piwi IP in Ago3 trans-heterozygotes	V009 CMEL1	SRR010956 Piwi IP in Ago3 heterozygotes	S3 male body	S5 imaginal disc	SRR010953 Aub heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	V008 S2-DRSC	SRR001340 IR beta-eliminated	V026 1182-4H cell	S17 3rd inster #1	S10 2-6h #1 (8)	S31 s2+48 #1	GSM180334 larvae: 1st instar and 3rd instars	SRR010960 wt, oxidized	SRR029030 dcr-2 knockdown	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	V028 CMEW1 Cl.8+ cell	SRR010955 Aub IP in Ago3 heterozygotes	V033 CMEW1 Cl.8+ cell	V021 ML-DmD21 cell	SRR029028 untreated (mock)	V081 embryo 2-6hr	GSM280087 S2cell (AGO2IP)	SRR032094 ago2 knockdown	GSM180335 imaginal discs	V082 embryo 14-24hr	S33 KC-48 #2	V011 Sg4	V020 S2R+ cell	SRR029031 loqs-ORF knockdown	S7 12-24hr embryo	S13 6-10h #2 (11)	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR029032 r2d2 knockdown	S30 s2-48 #2	V067 S2-NP	SRR010951 Ago3 heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	S26 1st instar #2	GSM180333 late embryo (12-24)	V002 IR+	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM280088 S2cell (AGO1IP)	GSM180331 early embryo (2-6)	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	V001 IR-	S12 6-10h #1 (10)	S11 2-6h #2 (9)	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	S16 KC -48 #1	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	V010 MLDmD20c5	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR032095 AGO1 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	S25 1st instar #1	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental	SRR032093 ago1 knockdown
.....................TGGACCATTAACAGAAACCCGTAA........................................................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AACAGAAACCCGTAAATCCGAA.................................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CCGAACTTGTGCTGTTTTATA.................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0