Page generated on Fri Oct 15 12:01:43 2010

dme-mir-1003



dme-mir-1003

View dme-mir-1003 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-1003	105	52798	1	1	7890		44885		23	12	44885	7890

AACTGGCCCTCAAGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATA
.........................((((((((.(((((((((..((..(....)..))..))))))))).))))))))..........................-20.60
.....((.((((....((((.....((((((((.(((((((((..((..(....)..))..))))))))).))))))))..))))..))))..))..........-33.50
Sense strand

	Size	Blast	Total	S32 s2+48 #2	SRR031696_2152	S31 s2+48 #1	SRR031703 Total small RNAs from r2d2 homozygous flies	S30 s2-48 #2	S15 S2 -48 #1	SRR031701 Total small RNAs from r2d2 heterozygous flies	S33 KC-48 #2	SRR029633 total small RNAs from hen1 homozygous flies	V097 CS ovary	S29 male head #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031692 Total small RNAs from Oregon R	V081 embryo 2-6hr	SRR001349 heterozygous dcr-2_untreated	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	V076 ML-DmBG3-C2	S16 KC -48 #1	S9 0-1h #3 (7)	V098 dcr-2[L811fsX] ovary	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR031699 Total small RNAs from dcr-2 homozygous flies	V010 MLDmD20c5	S28 0-2d pupae	V009 CMEL1	S22 female head #1	S14 0-1hr #1 (A)	SRR001347 ago2 untreated	S24 male body #2	SRR001664 homozygous dcr-2_untreated	S27 0-1d Pupae (w)	S19 2-4day pupae #1	V011 Sg4	S23 female body #2	S21 disk #2	S2 female head	S35 KC+48 #2	V021 ML-DmD21 cell	SRR029028 untreated (mock)	SRR029030 dcr-2 knockdown	SRR001338 IR non-beta-eliminated	V018 Kc167 cell	V024 kc167 cell	S10 2-6h #1 (8)	S34 KC+48 #1	SRR032094 ago2 knockdown	S5 imaginal disc	S12 6-10h #1 (10)	S13 6-10h #2 (11)	V028 CMEW1 Cl.8+ cell	S8 S2-48,+48, KC-48, +48 mix	SRR001345 ago2 non-beta-eliminated	V065 dcr-2[L811fsX], ovary, AGO1IP	V008 S2-DRSC	GSM467729 WT	V067 S2-NP	SRR029032 r2d2 knockdown	V089 ago2[414] ovary total RNA	V026 1182-4H cell	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR029033 lacZ knockdown	V066 r2d2[1], ovary, AGO1IP	V063 CS,ovary,AGO1IP	V033 CMEW1 Cl.8+ cell	V019 GM2 cell	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V020 S2R+ cell	GSM379065 Zuc Heterozygote	GSM467730 r2d2	S11 2-6h #2 (9)	GSM343287 Drosophila Toll 10b mutant embryos	SRR032093 ago1 knockdown	V088 r2d2[1] ovary total RNA	V025 S2R+ cell	S17 3rd inster #1	GSM280088 S2cell (AGO1IP)	S1 male head	SRR014280 Ovary_rep1 w1118_P	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379057 Krimp Mutant	SRR001343 dcr-2 non-beta-eliminated	SRR029029 dcr-1 knockdown	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379064 Vasa Mutant	SRR014275 Ovary_rep1 LK_P	S18 3rd inster #2	V082 embryo 14-24hr	SRR001344 dcr-2 beta-eliminated	V001 IR-	S7 12-24hr embryo	GSM180328 adult heads (female heads, male heads)	S3 male body	V075 ML-DmBG1-C1	SRR014282 Ovary_rep1 wK_P	V090 CS  male total RNA	SRR029031 loqs-ORF knockdown	GSM180337 tissue culture cells (S2 only)	S4 female body	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM467731 loq	GSM280085 WT testes (18-24nt)	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S20 2-4day pupae#2	V083 male, one day	GSM379056 Krimp Heterozygote	SRR001348 ago2 oxidized	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR014277 Ovary_rep1 NA_P	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379066 Zuc Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V002 IR+	GSM379063 Vasa Heterozygote	GSM180335 imaginal discs	SRR023400 total RNA extracted from P19 cells	V084 female, one day	GSM379060 SpnE Heterozygote	GSM379051 Armi Mutant	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM424740 S2 pKF63 stably transfected	GSM180331 early embryo (2-6)	GSM379062 Squ Mutant	SRR023399 RNA bound by P19 protein	SRR031693_4	SRR023197 RNA Library from S2 control cells	V064 ago2[414], ovary, AGO1IP	SRR010959 Ago3 IP in heterozygotes	GSM379061 Squ Heterozygote	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM180330 very early embryo (0-1)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379054 Flam Heterozygote	S25 1st instar #1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM379052 Aub Heterozygote	SRR014273 Ovary_rep1_Har_P	GSM379053 Aub Mutant	GSM379058	GSM180333 late embryo (12-24)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM379067 SpnE Mutant	GSM180334 larvae: 1st instar and 3rd instars	SRR010955 Aub IP in Ago3 heterozygotes	GSM180329 adult bodies (female bodies, male bodies)	SRR032092 mock oxidized	GSM280082 WT ovaries (18-29nt)	GSM379050 Armi Heterozygote	GSM379059	SRR001340 IR beta-eliminated	GSM180332 mid embryo (6-10)	SRR001337 WT_females beta-eliminated	GSM239052 S2 cells, non beta-eliminated	SRR001346 ago2 beta-eliminated	S26 1st instar #2	SRR010956 Piwi IP in Ago3 heterozygotes	GSM379055 Flam Mutant	SRR010954 Aub trans-heterozygotes, oxidized	GSM280084 loqs-/- ovaries (18-29nt)	SRR032095 AGO1 IP dcr2 knockdown	SRR032096 AGO2 IP dcr2 knockdown	GSM280087 S2cell (AGO2IP)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM239041 fly heads, non beta-eliminated	SRR010953 Aub heterozygotes, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	GSM424739 S2 parental	GSM239051 S2 cells, beta-eliminated	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010960 wt, oxidized	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
.......CCTCAAGCTGCGCAGAAG................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGGGTATCTGGATGTGGTTGGCT........................................................	24	1	16	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGGGTATCTGGATGTGGTTGG..........................................................	22	1	5430	85	0	76	13	40	11	3	68	5	831	18	6	2	646	0	2	1	198	36	2	557	0	0	4	222	22	190	12	12	1	3	3	5	22	85	4	8	1	13	82	10	37	2	149	42	29	11	0	2	60	27	152	9	0	3	100	1	128	10	133	33	23	13	2	2	76	66	25	69	40	1	1	26	6	37	47	4	2	0	51	57	0	0	39	12	1	0	63	3	26	2	33	0	13	4	1	0	26	15	40	13	2	1	27	0	2	7	1	32	6	1	2	15	6	0	5	3	10	8	0	27	19	1	11	18	39	3	1	14	1	8	2	0	15	18	18	0	2	3	4	0	3	5	7	3	0	0	0	0	1	1	0	0	0	4	0	0	2	0	0	0	0	0	1	0	1	0	2	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................GTGGGTATCTGGATGTGG..............................................................	18	1	58	1	0	1	0	0	0	0	3	0	7	0	0	0	6	0	0	0	12	0	0	7	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	1	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGGGTATCTGGATGTGGTTG...........................................................	21	1	2029	49	0	52	1	16	3	0	57	2	189	2	3	1	235	0	0	0	123	16	4	134	0	0	2	71	8	51	1	4	1	3	0	6	2	31	1	6	0	6	23	15	6	2	41	22	16	4	7	3	33	10	59	3	0	4	14	1	33	0	43	17	17	4	6	2	32	23	19	36	11	0	4	16	2	29	18	0	2	1	25	2	0	0	26	13	0	0	7	5	16	0	15	0	7	1	0	0	15	14	19	49	0	1	21	0	4	4	0	6	3	0	4	17	9	0	4	0	4	3	1	12	6	0	2	5	0	3	1	4	0	1	0	0	3	2	2	2	1	1	0	2	0	2	2	0	1	0	0	4	0	1	0	0	2	5	0	0	0	0	0	0	0	2	1	0	2	1	3	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGGGTATCTGGATGTGGT.............................................................	19	1	78	3	0	3	0	0	0	0	0	1	6	0	0	0	2	0	0	0	1	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	3	2	0	0	0	0	0	0	2	1	0	0	1	0	0	0	4	2	0	0	0	0	1	3	4	0	0	0	0	4	0	1	0	0	0	0	2	5	0	0	1	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	1	1	0	1	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGGGTATCTGGATGTGGTTGGC.........................................................	23	1	38	2	0	1	1	0	0	0	0	0	3	0	0	0	2	0	0	0	0	0	0	3	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	2	0	4	0	2	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGGGTATCTGGATGTGGTT............................................................	20	1	184	7	0	3	1	0	0	1	4	1	16	0	0	0	6	0	0	0	7	3	1	6	0	0	0	0	0	0	0	0	0	0	0	2	2	1	0	0	0	0	2	0	0	0	6	1	0	0	0	0	0	2	4	0	0	0	0	0	2	3	4	0	0	0	0	1	2	2	1	0	1	0	0	65	0	2	0	0	0	0	0	1	0	0	4	0	0	0	0	0	1	0	0	0	1	0	0	0	0	5	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGGGTATCTGGATGTGGTTGGCTC.......................................................	25	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGGGTATCTGGATGTGGT.............................................................	18	1	3	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGGGTATCTGGATGTGGTT............................................................	19	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGGGTATCTGGATGTGGTTG...........................................................	20	1	11	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGGGTATCTGGATGTGGTTGG..........................................................	21	1	14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................TCACATTTACATATTCAC..........................	18	1	7	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................CACATTTACATATTCACA.........................	18	1	7	0	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................CACATTTACATATTCACAG........................	19	1	16	1	0	0	0	1	1	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................ACATTTACATATTCACAG........................	18	1	18	0	0	0	0	0	1	1	0	0	0	0	1	1	0	0	3	3	0	0	0	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	S32 s2+48 #2	SRR031696_2152	S31 s2+48 #1	SRR031703 Total small RNAs from r2d2 homozygous flies	S30 s2-48 #2	S15 S2 -48 #1	SRR031701 Total small RNAs from r2d2 heterozygous flies	S33 KC-48 #2	SRR029633 total small RNAs from hen1 homozygous flies	V097 CS ovary	S29 male head #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031692 Total small RNAs from Oregon R	V081 embryo 2-6hr	SRR001349 heterozygous dcr-2_untreated	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	V076 ML-DmBG3-C2	S16 KC -48 #1	S9 0-1h #3 (7)	V098 dcr-2[L811fsX] ovary	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR031699 Total small RNAs from dcr-2 homozygous flies	V010 MLDmD20c5	S28 0-2d pupae	V009 CMEL1	S22 female head #1	S14 0-1hr #1 (A)	SRR001347 ago2 untreated	S24 male body #2	SRR001664 homozygous dcr-2_untreated	S27 0-1d Pupae (w)	S19 2-4day pupae #1	V011 Sg4	S23 female body #2	S21 disk #2	S2 female head	S35 KC+48 #2	V021 ML-DmD21 cell	SRR029028 untreated (mock)	SRR029030 dcr-2 knockdown	SRR001338 IR non-beta-eliminated	V018 Kc167 cell	V024 kc167 cell	S10 2-6h #1 (8)	S34 KC+48 #1	SRR032094 ago2 knockdown	S5 imaginal disc	S12 6-10h #1 (10)	S13 6-10h #2 (11)	V028 CMEW1 Cl.8+ cell	S8 S2-48,+48, KC-48, +48 mix	SRR001345 ago2 non-beta-eliminated	V065 dcr-2[L811fsX], ovary, AGO1IP	V008 S2-DRSC	GSM467729 WT	V067 S2-NP	SRR029032 r2d2 knockdown	V089 ago2[414] ovary total RNA	V026 1182-4H cell	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR029033 lacZ knockdown	V066 r2d2[1], ovary, AGO1IP	V063 CS,ovary,AGO1IP	V033 CMEW1 Cl.8+ cell	V019 GM2 cell	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V020 S2R+ cell	GSM379065 Zuc Heterozygote	GSM467730 r2d2	S11 2-6h #2 (9)	GSM343287 Drosophila Toll 10b mutant embryos	SRR032093 ago1 knockdown	V088 r2d2[1] ovary total RNA	V025 S2R+ cell	S17 3rd inster #1	GSM280088 S2cell (AGO1IP)	S1 male head	SRR014280 Ovary_rep1 w1118_P	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379057 Krimp Mutant	SRR001343 dcr-2 non-beta-eliminated	SRR029029 dcr-1 knockdown	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379064 Vasa Mutant	SRR014275 Ovary_rep1 LK_P	S18 3rd inster #2	V082 embryo 14-24hr	SRR001344 dcr-2 beta-eliminated	V001 IR-	S7 12-24hr embryo	GSM180328 adult heads (female heads, male heads)	S3 male body	V075 ML-DmBG1-C1	SRR014282 Ovary_rep1 wK_P	V090 CS  male total RNA	SRR029031 loqs-ORF knockdown	GSM180337 tissue culture cells (S2 only)	S4 female body	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM467731 loq	GSM280085 WT testes (18-24nt)	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S20 2-4day pupae#2	V083 male, one day	GSM379056 Krimp Heterozygote	SRR001348 ago2 oxidized	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR014277 Ovary_rep1 NA_P	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379066 Zuc Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V002 IR+	GSM379063 Vasa Heterozygote	GSM180335 imaginal discs	SRR023400 total RNA extracted from P19 cells	V084 female, one day	GSM379060 SpnE Heterozygote	GSM379051 Armi Mutant	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM424740 S2 pKF63 stably transfected	GSM180331 early embryo (2-6)	GSM379062 Squ Mutant	SRR023399 RNA bound by P19 protein	SRR031693_4	SRR023197 RNA Library from S2 control cells	V064 ago2[414], ovary, AGO1IP	SRR010959 Ago3 IP in heterozygotes	GSM379061 Squ Heterozygote	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM180330 very early embryo (0-1)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379054 Flam Heterozygote	S25 1st instar #1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM379052 Aub Heterozygote	SRR014273 Ovary_rep1_Har_P	GSM379053 Aub Mutant	GSM379058	GSM180333 late embryo (12-24)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM379067 SpnE Mutant	GSM180334 larvae: 1st instar and 3rd instars	SRR010955 Aub IP in Ago3 heterozygotes	GSM180329 adult bodies (female bodies, male bodies)	SRR032092 mock oxidized	GSM280082 WT ovaries (18-29nt)	GSM379050 Armi Heterozygote	GSM379059	SRR001340 IR beta-eliminated	GSM180332 mid embryo (6-10)	SRR001337 WT_females beta-eliminated	GSM239052 S2 cells, non beta-eliminated	SRR001346 ago2 beta-eliminated	S26 1st instar #2	SRR010956 Piwi IP in Ago3 heterozygotes	GSM379055 Flam Mutant	SRR010954 Aub trans-heterozygotes, oxidized	GSM280084 loqs-/- ovaries (18-29nt)	SRR032095 AGO1 IP dcr2 knockdown	SRR032096 AGO2 IP dcr2 knockdown	GSM280087 S2cell (AGO2IP)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM239041 fly heads, non beta-eliminated	SRR010953 Aub heterozygotes, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	GSM424739 S2 parental	GSM239051 S2 cells, beta-eliminated	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010960 wt, oxidized	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
............AGCTGCGCAGAAGGTGGG...........................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0