Page generated on Fri Oct 15 12:01:49 2010

dme-mir-1005



dme-mir-1005

View dme-mir-1005 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-1005	110	5622			414	1	5204	1	2	17	5204	414

GCCATGATGCCCACCATTCTGACCTGTGAGTTGATCGATTTCGAGGTTTTGGCACACGAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGTGTTCG
.........................(((((((((..((((((.((((((((.....)))....))))))))))).)))))))))..........................-17.00
..................((((((((((((((((..((((((.((((((((.....)))....))))))))))).))))))))))).............)))))......-23.81
Sense strand

	Size	Blast	Total	GSM379057 Krimp Mutant	SRR031696_2152	GSM379065 Zuc Heterozygote	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	V097 CS ovary	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM379064 Vasa Mutant	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V098 dcr-2[L811fsX] ovary	V082 embryo 14-24hr	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031692 Total small RNAs from Oregon R	V063 CS,ovary,AGO1IP	S29 male head #1	V088 r2d2[1] ovary total RNA	GSM379056 Krimp Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014273 Ovary_rep1_Har_P	V001 IR-	SRR001347 ago2 untreated	V002 IR+	GSM379051 Armi Mutant	V066 r2d2[1], ovary, AGO1IP	SRR014275 Ovary_rep1 LK_P	SRR001338 IR non-beta-eliminated	SRR001349 heterozygous dcr-2_untreated	V081 embryo 2-6hr	V064 ago2[414], ovary, AGO1IP	V019 GM2 cell	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V090 CS  male total RNA	SRR001664 homozygous dcr-2_untreated	SRR014280 Ovary_rep1 w1118_P	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379050 Armi Heterozygote	SRR014277 Ovary_rep1 NA_P	GSM379060 SpnE Heterozygote	S28 0-2d pupae	V089 ago2[414] ovary total RNA	V083 male, one day	GSM379054 Flam Heterozygote	S22 female head #1	V018 Kc167 cell	V008 S2-DRSC	V084 female, one day	GSM379066 Zuc Mutant	GSM379062 Squ Mutant	GSM280084 loqs-/- ovaries (18-29nt)	V026 1182-4H cell	GSM379061 Squ Heterozygote	OSS6 Drosophila OSS cell small RNA libraries, rep2	V024 kc167 cell	S24 male body #2	GSM280088 S2cell (AGO1IP)	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS2 Drosophila OSS cell small RNA libraries, rep1	S2 female head	SRR014282 Ovary_rep1 wK_P	GSM379063 Vasa Heterozygote	GSM379052 Aub Heterozygote	S10 2-6h #1 (8)	V076 ML-DmBG3-C2	S1 male head	GSM467729 WT	GSM280082 WT ovaries (18-29nt)	GSM379058	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S23 female body #2	V075 ML-DmBG1-C1	SRR029030 dcr-2 knockdown	GSM467730 r2d2	GSM379059	SRR029028 untreated (mock)	S12 6-10h #1 (10)	V009 CMEL1	S13 6-10h #2 (11)	V010 MLDmD20c5	SRR032095 AGO1 IP dcr2 knockdown	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V067 S2-NP	S9 0-1h #3 (7)	SRR001343 dcr-2 non-beta-eliminated	SRR032093 ago1 knockdown	S19 2-4day pupae #1	GSM379055 Flam Mutant	V021 ML-DmD21 cell	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM180328 adult heads (female heads, male heads)	S21 disk #2	GSM379067 SpnE Mutant	SRR029031 loqs-ORF knockdown	SRR001345 ago2 non-beta-eliminated	SRR023399 RNA bound by P19 protein	V033 CMEW1 Cl.8+ cell	S7 12-24hr embryo	S18 3rd inster #2	GSM467731 loq	S3 male body	V025 S2R+ cell	GSM343287 Drosophila Toll 10b mutant embryos	S27 0-1d Pupae (w)	S17 3rd inster #1	S26 1st instar #2	GSM180333 late embryo (12-24)	SRR001341 WT_males non-beta-eliminated	S32 s2+48 #2	SRR010959 Ago3 IP in heterozygotes	S5 imaginal disc	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	GSM280085 WT testes (18-24nt)	S4 female body	S31 s2+48 #1	SRR031693_4	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	V028 CMEW1 Cl.8+ cell	S25 1st instar #1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S34 KC+48 #1	S15 S2 -48 #1	S20 2-4day pupae#2	SRR010955 Aub IP in Ago3 heterozygotes	GSM239041 fly heads, non beta-eliminated	S35 KC+48 #2	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	S16 KC -48 #1	GSM180335 imaginal discs	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	S33 KC-48 #2	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM379053 Aub Mutant	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	GSM180331 early embryo (2-6)	SRR029032 r2d2 knockdown	S8 S2-48,+48, KC-48, +48 mix	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S30 s2-48 #2	V011 Sg4	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM424739 S2 parental	GSM180329 adult bodies (female bodies, male bodies)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized
.........................GTGAGTTGATCGATTTCGAGGTTTT............................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGAGTTGATCGATTTCGAGGT...............................................................	22	1	20	0	0	0	1	0	0	3	0	0	0	6	2	1	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGAGTTGATCGATTTCGAG.................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGAGTTGATCGATTTCGAGG................................................................	21	1	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGAGTTGATCGATTTCGAGGTT..............................................................	23	1	381	12	0	11	2	1	0	57	1	2	0	41	62	4	1	1	2	0	16	6	7	0	3	5	1	2	0	0	5	1	2	56	0	4	2	3	1	0	1	0	1	0	1	8	9	1	0	5	0	6	0	1	0	1	2	0	2	0	0	0	5	0	0	0	0	0	0	11	2	0	0	0	1	2	0	2	0	2	0	0	0	1	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGAGTTGATCGATTTCGAGGTTT.............................................................	24	1	5	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGAGTTGATCGATTTCGA..................................................................	19	1	3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GATTTCGAGGTTTTGGCACA......................................................	20	1	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................GTTTTGGCACACGAATATAA.............................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................ATCTGGAATCTTTAATTCGCAGT.......................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................ATCTGGAATCTTTAATTCGCAG........................	22	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TCTGGAATCTTTAATTCGCAGTT......................	23	1	113	1	2	2	13	0	6	6	4	1	1	1	0	2	0	1	7	0	4	1	0	5	6	1	0	2	1	3	1	2	1	0	3	4	0	1	0	0	1	3	3	1	0	1	0	1	0	0	1	1	1	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	6	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TCTGGAATCTTTAATTCGCA.........................	20	1	424	6	16	10	20	30	31	6	25	4	5	9	3	2	12	14	3	25	3	2	4	2	5	1	6	0	5	1	2	7	5	0	0	19	0	5	5	3	0	4	2	0	3	1	4	0	5	7	6	3	2	2	1	2	4	0	4	3	0	2	2	0	1	1	0	2	1	0	3	2	4	0	1	0	2	2	4	1	2	3	0	2	0	1	0	2	2	2	4	2	0	1	2	1	0	0	1	0	0	2	0	2	0	2	0	1	0	0	0	0	0	1	3	2	0	1	3	0	1	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TCTGGAATCTTTAATTCGCAGT.......................	22	1	1270	115	23	97	68	10	7	47	10	30	3	28	21	50	2	7	28	32	29	30	30	14	33	34	4	35	15	27	25	1	3	2	19	1	22	13	3	20	8	8	13	7	25	19	8	4	8	4	4	5	2	3	12	3	7	11	2	11	11	10	0	8	11	5	8	2	1	3	5	1	6	4	2	0	5	4	3	7	2	4	0	0	2	3	7	1	3	2	1	0	3	2	2	0	0	0	3	2	5	0	1	1	3	1	4	3	1	0	3	4	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TCTGGAATCTTTAATTCGC..........................	19	1	141	1	8	1	4	12	27	0	14	0	3	0	0	0	5	4	3	2	0	0	0	2	0	0	4	1	0	1	0	3	9	0	1	3	0	5	4	2	0	2	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	2	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TCTGGAATCTTTAATTCG...........................	18	1	19	0	0	0	0	2	0	0	1	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	3	0	0	1	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TCTGGAATCTTTAATTCGCAG........................	21	1	3208	162	238	156	143	192	155	46	105	107	123	37	38	57	96	84	67	46	48	49	47	63	34	41	65	37	55	43	39	53	44	7	38	29	31	22	34	22	35	26	20	30	9	7	8	23	13	6	12	9	19	17	9	15	8	8	9	3	7	7	11	8	5	10	8	12	14	2	5	11	4	10	9	11	5	3	2	2	6	3	11	7	7	4	0	7	4	5	2	0	5	4	3	5	1	6	2	3	0	2	4	2	1	1	0	0	3	4	1	0	0	1	0	1	3	1	0	3	1	2	0	2	0	1	1	1	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CTGGAATCTTTAATTCGCAGT.......................	21	1	5	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CTGGAATCTTTAATTCGCAG........................	20	1	15	0	1	0	0	0	2	0	5	0	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TGGAATCTTTAATTCGCAGT.......................	20	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TGGAATCTTTAATTCGCAG........................	19	1	2	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGAATCTTTAATTCGCAGT.......................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TTCCCACCGAAATGTCAGTGT...	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	GSM379057 Krimp Mutant	SRR031696_2152	GSM379065 Zuc Heterozygote	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	V097 CS ovary	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM379064 Vasa Mutant	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V098 dcr-2[L811fsX] ovary	V082 embryo 14-24hr	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031692 Total small RNAs from Oregon R	V063 CS,ovary,AGO1IP	S29 male head #1	V088 r2d2[1] ovary total RNA	GSM379056 Krimp Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014273 Ovary_rep1_Har_P	V001 IR-	SRR001347 ago2 untreated	V002 IR+	GSM379051 Armi Mutant	V066 r2d2[1], ovary, AGO1IP	SRR014275 Ovary_rep1 LK_P	SRR001338 IR non-beta-eliminated	SRR001349 heterozygous dcr-2_untreated	V081 embryo 2-6hr	V064 ago2[414], ovary, AGO1IP	V019 GM2 cell	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V090 CS  male total RNA	SRR001664 homozygous dcr-2_untreated	SRR014280 Ovary_rep1 w1118_P	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379050 Armi Heterozygote	SRR014277 Ovary_rep1 NA_P	GSM379060 SpnE Heterozygote	S28 0-2d pupae	V089 ago2[414] ovary total RNA	V083 male, one day	GSM379054 Flam Heterozygote	S22 female head #1	V018 Kc167 cell	V008 S2-DRSC	V084 female, one day	GSM379066 Zuc Mutant	GSM379062 Squ Mutant	GSM280084 loqs-/- ovaries (18-29nt)	V026 1182-4H cell	GSM379061 Squ Heterozygote	OSS6 Drosophila OSS cell small RNA libraries, rep2	V024 kc167 cell	S24 male body #2	GSM280088 S2cell (AGO1IP)	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS2 Drosophila OSS cell small RNA libraries, rep1	S2 female head	SRR014282 Ovary_rep1 wK_P	GSM379063 Vasa Heterozygote	GSM379052 Aub Heterozygote	S10 2-6h #1 (8)	V076 ML-DmBG3-C2	S1 male head	GSM467729 WT	GSM280082 WT ovaries (18-29nt)	GSM379058	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S23 female body #2	V075 ML-DmBG1-C1	SRR029030 dcr-2 knockdown	GSM467730 r2d2	GSM379059	SRR029028 untreated (mock)	S12 6-10h #1 (10)	V009 CMEL1	S13 6-10h #2 (11)	V010 MLDmD20c5	SRR032095 AGO1 IP dcr2 knockdown	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V067 S2-NP	S9 0-1h #3 (7)	SRR001343 dcr-2 non-beta-eliminated	SRR032093 ago1 knockdown	S19 2-4day pupae #1	GSM379055 Flam Mutant	V021 ML-DmD21 cell	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM180328 adult heads (female heads, male heads)	S21 disk #2	GSM379067 SpnE Mutant	SRR029031 loqs-ORF knockdown	SRR001345 ago2 non-beta-eliminated	SRR023399 RNA bound by P19 protein	V033 CMEW1 Cl.8+ cell	S7 12-24hr embryo	S18 3rd inster #2	GSM467731 loq	S3 male body	V025 S2R+ cell	GSM343287 Drosophila Toll 10b mutant embryos	S27 0-1d Pupae (w)	S17 3rd inster #1	S26 1st instar #2	GSM180333 late embryo (12-24)	SRR001341 WT_males non-beta-eliminated	S32 s2+48 #2	SRR010959 Ago3 IP in heterozygotes	S5 imaginal disc	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	GSM280085 WT testes (18-24nt)	S4 female body	S31 s2+48 #1	SRR031693_4	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	V028 CMEW1 Cl.8+ cell	S25 1st instar #1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S34 KC+48 #1	S15 S2 -48 #1	S20 2-4day pupae#2	SRR010955 Aub IP in Ago3 heterozygotes	GSM239041 fly heads, non beta-eliminated	S35 KC+48 #2	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	S16 KC -48 #1	GSM180335 imaginal discs	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	S33 KC-48 #2	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM379053 Aub Mutant	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	GSM180331 early embryo (2-6)	SRR029032 r2d2 knockdown	S8 S2-48,+48, KC-48, +48 mix	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S30 s2-48 #2	V011 Sg4	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM424739 S2 parental	GSM180329 adult bodies (female bodies, male bodies)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized