Page generated on Fri Oct 15 12:01:47 2010

dme-mir-1008



dme-mir-1008

View dme-mir-1008 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-1008	106	15287	1		1357		13920	1	10	14	13920	1357

GAAGAAGCTGAAGTTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTCCAGGATCTA
.........................((((((((..(((((((.(((((.(....).)))))..)))))))..))))))))..........................-20.00
..(((..(((((((..(((.(((.(((((((((..(((((((.(((((.(....).)))))..)))))))..)))))))))..)))..))).)))).)))..))).-33.20
Sense strand

	Size	Blast	Total	S29 male head #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	V076 ML-DmBG3-C2	SRR031692 Total small RNAs from Oregon R	S33 KC-48 #2	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	S22 female head #1	S32 s2+48 #2	SRR001349 heterozygous dcr-2_untreated	V081 embryo 2-6hr	V009 CMEL1	SRR001347 ago2 untreated	SRR001664 homozygous dcr-2_untreated	SRR001345 ago2 non-beta-eliminated	V011 Sg4	S16 KC -48 #1	SRR001338 IR non-beta-eliminated	SRR031696_2152	V008 S2-DRSC	S31 s2+48 #1	S30 s2-48 #2	V033 CMEW1 Cl.8+ cell	GSM379057 Krimp Mutant	GSM379065 Zuc Heterozygote	SRR031703 Total small RNAs from r2d2 homozygous flies	V024 kc167 cell	S35 KC+48 #2	V018 Kc167 cell	S2 female head	S24 male body #2	S9 0-1h #3 (7)	S13 6-10h #2 (11)	V021 ML-DmD21 cell	SRR031701 Total small RNAs from r2d2 heterozygous flies	V010 MLDmD20c5	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S10 2-6h #1 (8)	GSM379064 Vasa Mutant	V075 ML-DmBG1-C1	SRR029028 untreated (mock)	S12 6-10h #1 (10)	S15 S2 -48 #1	V063 CS,ovary,AGO1IP	S28 0-2d pupae	V088 r2d2[1] ovary total RNA	S34 KC+48 #1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V028 CMEW1 Cl.8+ cell	S23 female body #2	V097 CS ovary	S21 disk #2	V019 GM2 cell	V001 IR-	V026 1182-4H cell	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V067 S2-NP	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR001344 dcr-2 beta-eliminated	S1 male head	S19 2-4day pupae #1	V098 dcr-2[L811fsX] ovary	V082 embryo 14-24hr	S5 imaginal disc	GSM379056 Krimp Heterozygote	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V020 S2R+ cell	V025 S2R+ cell	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR014275 Ovary_rep1 LK_P	S14 0-1hr #1 (A)	V002 IR+	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR001341 WT_males non-beta-eliminated	GSM379063 Vasa Heterozygote	SRR029032 r2d2 knockdown	SRR001339 WT_females non-beta-eliminated	S27 0-1d Pupae (w)	SRR032094 ago2 knockdown	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V066 r2d2[1], ovary, AGO1IP	GSM379052 Aub Heterozygote	S8 S2-48,+48, KC-48, +48 mix	SRR014277 Ovary_rep1 NA_P	GSM343287 Drosophila Toll 10b mutant embryos	GSM379066 Zuc Mutant	SRR001343 dcr-2 non-beta-eliminated	SRR010959 Ago3 IP in heterozygotes	GSM379051 Armi Mutant	SRR014282 Ovary_rep1 wK_P	SRR014280 Ovary_rep1 w1118_P	GSM379058	SRR001348 ago2 oxidized	GSM379053 Aub Mutant	GSM379060 SpnE Heterozygote	V089 ago2[414] ovary total RNA	V064 ago2[414], ovary, AGO1IP	S26 1st instar #2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR014273 Ovary_rep1_Har_P	GSM379062 Squ Mutant	SRR032095 AGO1 IP dcr2 knockdown	S11 2-6h #2 (9)	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM280088 S2cell (AGO1IP)	GSM280083 dcr-2-/- ovaries (18-29nt)	S17 3rd inster #1	GSM180328 adult heads (female heads, male heads)	GSM379054 Flam Heterozygote	S3 male body	S7 12-24hr embryo	SRR032092 mock oxidized	S25 1st instar #1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR029030 dcr-2 knockdown	S4 female body	GSM379067 SpnE Mutant	GSM379050 Armi Heterozygote	SRR029033 lacZ knockdown	S18 3rd inster #2	V083 male, one day	GSM379059	V090 CS  male total RNA	SRR031693_4	SRR032093 ago1 knockdown	SRR029029 dcr-1 knockdown	S20 2-4day pupae#2	GSM280085 WT testes (18-24nt)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM239041 fly heads, non beta-eliminated	GSM379061 Squ Heterozygote	GSM280082 WT ovaries (18-29nt)	GSM239052 S2 cells, non beta-eliminated	GSM180335 imaginal discs	V084 female, one day	GSM379055 Flam Mutant	SRR010955 Aub IP in Ago3 heterozygotes	GSM180333 late embryo (12-24)	SRR001337 WT_females beta-eliminated	SRR023400 total RNA extracted from P19 cells	GSM280084 loqs-/- ovaries (18-29nt)	GSM467729 WT	SRR010960 wt, oxidized	GSM180334 larvae: 1st instar and 3rd instars	SRR001346 ago2 beta-eliminated	GSM180332 mid embryo (6-10)	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM467730 r2d2	SRR010951 Ago3 heterozygotes, oxidized	SRR029031 loqs-ORF knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010956 Piwi IP in Ago3 heterozygotes	SRR023402 total RNA extracted from NLS-P19 cells	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM246084 D. melanogaster adult male heads 454	GSM180331 early embryo (2-6)	GSM180330 very early embryo (0-1)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM180329 adult bodies (female bodies, male bodies)	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR001340 IR beta-eliminated	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM239050 fly heads, beta-eliminated	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental	SRR010953 Aub heterozygotes, oxidized
GAAGAAGCTGAAGTTCCTCATCTAT.................................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAATATCTAAAGTTGAAC.............................................................	20	1	50	0	0	0	0	0	0	3	1	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	2	0	1	0	1	0	1	0	0	0	0	0	1	2	0	0	0	2	2	0	0	0	0	1	0	0	0	0	0	0	1	0	2	3	0	0	0	0	0	1	1	0	0	0	0	2	1	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAATATCTAAAGTTGAACTTG..........................................................	23	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAATATCTAAAGTTGAACT............................................................	21	1	1262	7	7	0	0	8	8	104	20	4	0	1	2	2	4	235	5	4	2	0	11	0	1	3	12	0	6	38	6	11	22	23	1	14	1	0	0	4	10	4	11	7	12	5	65	28	2	1	10	0	41	2	26	29	0	50	1	5	8	12	10	38	4	1	0	1	30	38	2	6	16	13	8	11	8	5	2	7	2	1	1	13	1	1	25	8	2	1	0	10	1	2	0	0	0	8	7	2	1	0	0	19	3	0	1	3	3	2	0	2	1	2	2	1	1	1	0	0	0	0	3	0	0	2	1	0	1	5	0	7	1	5	0	0	0	1	0	0	1	0	0	5	0	0	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAATATCTAAAGTTGAACTTGG.........................................................	24	1	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAATATCTAAAGTTGAACTTGGCC.......................................................	26	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAATATCTAAAGTTGAACTTGGCCAA.....................................................	28	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAATATCTAAAGTTGAA..............................................................	19	1	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAATATCTAAAGTTGAACTTGGCCA......................................................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAATATCTAAAGTTGAACTT...........................................................	22	1	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAATATCTAAAGTTGAACTTGGC........................................................	25	1	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	2	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TAAATATCTAAAGTTGAACTTGGCC.......................................................	25	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TAAATATCTAAAGTTGAACTTG..........................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................CACAGCTTTTTGTGTTTACAG........................	21	1	49	0	10	2	4	8	3	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	5	0	0	1	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................CACAGCTTTTTGTGTTTAC..........................	19	1	5	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ACAGCTTTTTGTGTTTAC..........................	18	1	3	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ACAGCTTTTTGTGTTTACA.........................	19	1	35	0	1	0	1	1	3	4	1	0	0	3	0	0	0	0	1	0	1	0	0	0	0	1	1	0	0	1	2	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	1	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ACAGCTTTTTGTGTTTACAG........................	20	1	99	0	5	14	11	1	3	0	0	0	6	6	0	0	0	0	3	0	0	1	5	0	0	0	1	0	0	0	1	2	0	2	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	10	1	0	0	0	0	0	1	2	1	2	0	1	0	0	0	0	4	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................CAGCTTTTTGTGTTTACA.........................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................CAGCTTTTTGTGTTTACAG........................	19	1	8	0	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................AGCTTTTTGTGTTTACAG........................	18	1	37	0	1	0	0	4	1	0	1	1	0	0	0	1	1	0	0	1	0	2	0	0	0	1	0	1	0	2	0	0	1	0	1	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	S29 male head #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	V076 ML-DmBG3-C2	SRR031692 Total small RNAs from Oregon R	S33 KC-48 #2	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	S22 female head #1	S32 s2+48 #2	SRR001349 heterozygous dcr-2_untreated	V081 embryo 2-6hr	V009 CMEL1	SRR001347 ago2 untreated	SRR001664 homozygous dcr-2_untreated	SRR001345 ago2 non-beta-eliminated	V011 Sg4	S16 KC -48 #1	SRR001338 IR non-beta-eliminated	SRR031696_2152	V008 S2-DRSC	S31 s2+48 #1	S30 s2-48 #2	V033 CMEW1 Cl.8+ cell	GSM379057 Krimp Mutant	GSM379065 Zuc Heterozygote	SRR031703 Total small RNAs from r2d2 homozygous flies	V024 kc167 cell	S35 KC+48 #2	V018 Kc167 cell	S2 female head	S24 male body #2	S9 0-1h #3 (7)	S13 6-10h #2 (11)	V021 ML-DmD21 cell	SRR031701 Total small RNAs from r2d2 heterozygous flies	V010 MLDmD20c5	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S10 2-6h #1 (8)	GSM379064 Vasa Mutant	V075 ML-DmBG1-C1	SRR029028 untreated (mock)	S12 6-10h #1 (10)	S15 S2 -48 #1	V063 CS,ovary,AGO1IP	S28 0-2d pupae	V088 r2d2[1] ovary total RNA	S34 KC+48 #1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V028 CMEW1 Cl.8+ cell	S23 female body #2	V097 CS ovary	S21 disk #2	V019 GM2 cell	V001 IR-	V026 1182-4H cell	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V067 S2-NP	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR001344 dcr-2 beta-eliminated	S1 male head	S19 2-4day pupae #1	V098 dcr-2[L811fsX] ovary	V082 embryo 14-24hr	S5 imaginal disc	GSM379056 Krimp Heterozygote	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V020 S2R+ cell	V025 S2R+ cell	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR014275 Ovary_rep1 LK_P	S14 0-1hr #1 (A)	V002 IR+	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR001341 WT_males non-beta-eliminated	GSM379063 Vasa Heterozygote	SRR029032 r2d2 knockdown	SRR001339 WT_females non-beta-eliminated	S27 0-1d Pupae (w)	SRR032094 ago2 knockdown	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V066 r2d2[1], ovary, AGO1IP	GSM379052 Aub Heterozygote	S8 S2-48,+48, KC-48, +48 mix	SRR014277 Ovary_rep1 NA_P	GSM343287 Drosophila Toll 10b mutant embryos	GSM379066 Zuc Mutant	SRR001343 dcr-2 non-beta-eliminated	SRR010959 Ago3 IP in heterozygotes	GSM379051 Armi Mutant	SRR014282 Ovary_rep1 wK_P	SRR014280 Ovary_rep1 w1118_P	GSM379058	SRR001348 ago2 oxidized	GSM379053 Aub Mutant	GSM379060 SpnE Heterozygote	V089 ago2[414] ovary total RNA	V064 ago2[414], ovary, AGO1IP	S26 1st instar #2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR014273 Ovary_rep1_Har_P	GSM379062 Squ Mutant	SRR032095 AGO1 IP dcr2 knockdown	S11 2-6h #2 (9)	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM280088 S2cell (AGO1IP)	GSM280083 dcr-2-/- ovaries (18-29nt)	S17 3rd inster #1	GSM180328 adult heads (female heads, male heads)	GSM379054 Flam Heterozygote	S3 male body	S7 12-24hr embryo	SRR032092 mock oxidized	S25 1st instar #1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR029030 dcr-2 knockdown	S4 female body	GSM379067 SpnE Mutant	GSM379050 Armi Heterozygote	SRR029033 lacZ knockdown	S18 3rd inster #2	V083 male, one day	GSM379059	V090 CS  male total RNA	SRR031693_4	SRR032093 ago1 knockdown	SRR029029 dcr-1 knockdown	S20 2-4day pupae#2	GSM280085 WT testes (18-24nt)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM239041 fly heads, non beta-eliminated	GSM379061 Squ Heterozygote	GSM280082 WT ovaries (18-29nt)	GSM239052 S2 cells, non beta-eliminated	GSM180335 imaginal discs	V084 female, one day	GSM379055 Flam Mutant	SRR010955 Aub IP in Ago3 heterozygotes	GSM180333 late embryo (12-24)	SRR001337 WT_females beta-eliminated	SRR023400 total RNA extracted from P19 cells	GSM280084 loqs-/- ovaries (18-29nt)	GSM467729 WT	SRR010960 wt, oxidized	GSM180334 larvae: 1st instar and 3rd instars	SRR001346 ago2 beta-eliminated	GSM180332 mid embryo (6-10)	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM467730 r2d2	SRR010951 Ago3 heterozygotes, oxidized	SRR029031 loqs-ORF knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010956 Piwi IP in Ago3 heterozygotes	SRR023402 total RNA extracted from NLS-P19 cells	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM246084 D. melanogaster adult male heads 454	GSM180331 early embryo (2-6)	GSM180330 very early embryo (0-1)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM180329 adult bodies (female bodies, male bodies)	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR001340 IR beta-eliminated	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM239050 fly heads, beta-eliminated	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental	SRR010953 Aub heterozygotes, oxidized
..................................................................................GAGAACGAGTACTTCCAGGAT...	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0