Page generated on Fri Oct 15 12:01:49 2010

dme-mir-1009



dme-mir-1009

View dme-mir-1009 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-1009	110	9155	1		406	1	8737	1	11	13	8737	406

TTTCGCAGCCTGTCCATTCAAGACGTAAGTGTAAGACTTTCTTGAGTTACCCGCGATGAGTATCTCAAAAATTGTTACATTTCAGAGCGATAGCTATCCACCTATGGAGC
........................(.((((((((.(.(((.(((((.(((.(.....).))).)))))))).).)))))))))...........................-12.50
..((((.....(((.......)))..((((((((.(.(((.(((((.(((.(.....).))).)))))))).).))))))))....))))......((((....))))..-22.10
Sense strand

	Size	Blast	Total	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031692 Total small RNAs from Oregon R	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031696_2152	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001349 heterozygous dcr-2_untreated	SRR001347 ago2 untreated	S29 male head #1	SRR001338 IR non-beta-eliminated	SRR001664 homozygous dcr-2_untreated	SRR001345 ago2 non-beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	S22 female head #1	SRR001348 ago2 oxidized	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001344 dcr-2 beta-eliminated	S2 female head	V082 embryo 14-24hr	GSM379065 Zuc Heterozygote	S10 2-6h #1 (8)	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V097 CS ovary	S12 6-10h #1 (10)	S24 male body #2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S9 0-1h #3 (7)	S21 disk #2	S23 female body #2	S28 0-2d pupae	V098 dcr-2[L811fsX] ovary	V076 ML-DmBG3-C2	OSS2 Drosophila OSS cell small RNA libraries, rep1	S1 male head	GSM379057 Krimp Mutant	V090 CS  male total RNA	S32 s2+48 #2	SRR031693_4	GSM379064 Vasa Mutant	SRR014280 Ovary_rep1 w1118_P	V083 male, one day	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V088 r2d2[1] ovary total RNA	V066 r2d2[1], ovary, AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V008 S2-DRSC	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S5 imaginal disc	V001 IR-	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S19 2-4day pupae #1	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S34 KC+48 #1	S35 KC+48 #2	V018 Kc167 cell	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM379063 Vasa Heterozygote	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS6 Drosophila OSS cell small RNA libraries, rep2	V084 female, one day	V009 CMEL1	V063 CS,ovary,AGO1IP	SRR001340 IR beta-eliminated	SRR014275 Ovary_rep1 LK_P	SRR014282 Ovary_rep1 wK_P	V010 MLDmD20c5	V089 ago2[414] ovary total RNA	S33 KC-48 #2	GSM379060 SpnE Heterozygote	S27 0-1d Pupae (w)	V024 kc167 cell	V081 embryo 2-6hr	S14 0-1hr #1 (A)	GSM180328 adult heads (female heads, male heads)	V019 GM2 cell	GSM379056 Krimp Heterozygote	SRR014273 Ovary_rep1_Har_P	GSM379066 Zuc Mutant	S16 KC -48 #1	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR010959 Ago3 IP in heterozygotes	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM379061 Squ Heterozygote	V033 CMEW1 Cl.8+ cell	S11 2-6h #2 (9)	S13 6-10h #2 (11)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM379054 Flam Heterozygote	GSM379062 Squ Mutant	V011 Sg4	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR010955 Aub IP in Ago3 heterozygotes	GSM280085 WT testes (18-24nt)	GSM379058	V002 IR+	S4 female body	S31 s2+48 #1	SRR014277 Ovary_rep1 NA_P	S15 S2 -48 #1	V075 ML-DmBG1-C1	SRR001346 ago2 beta-eliminated	GSM379067 SpnE Mutant	SRR001337 WT_females beta-eliminated	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	GSM379052 Aub Heterozygote	S3 male body	S25 1st instar #1	V021 ML-DmD21 cell	GSM379051 Armi Mutant	GSM343287 Drosophila Toll 10b mutant embryos	S17 3rd inster #1	V064 ago2[414], ovary, AGO1IP	S26 1st instar #2	GSM180332 mid embryo (6-10)	GSM180335 imaginal discs	S7 12-24hr embryo	SRR010954 Aub trans-heterozygotes, oxidized	SRR010960 wt, oxidized	S18 3rd inster #2	GSM467729 WT	GSM379053 Aub Mutant	S8 S2-48,+48, KC-48, +48 mix	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM180333 late embryo (12-24)	SRR032094 ago2 knockdown	GSM379050 Armi Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM280084 loqs-/- ovaries (18-29nt)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	V028 CMEW1 Cl.8+ cell	V026 1182-4H cell	GSM180331 early embryo (2-6)	S30 s2-48 #2	V025 S2R+ cell	S20 2-4day pupae#2	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	GSM239052 S2 cells, non beta-eliminated	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379059	GSM180329 adult bodies (female bodies, male bodies)	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	GSM280088 S2cell (AGO1IP)	SRR029032 r2d2 knockdown	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	V067 S2-NP	SRR029030 dcr-2 knockdown	GSM424739 S2 parental	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized
..........TGTCCATTCAAGACGTAAGT................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTAAGTGTAAGACTTTCTTGAGTTACCC..........................................................	28	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTAAGTGTAAGACTTTCTTG..................................................................	20	1	7	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTAAGTGTAAGACTTTCTTGAGTTAC............................................................	26	1	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTAAGTGTAAGACTTTCTTGAGTTACC...........................................................	27	1	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTAAGTGTAAGACTTTCTTGAGT...............................................................	23	1	135	0	2	0	0	1	1	0	0	0	0	0	1	0	0	0	0	2	2	0	0	0	2	10	0	1	6	0	0	0	0	0	0	0	1	0	0	0	4	1	0	1	0	1	0	4	3	3	2	1	8	1	7	0	0	5	0	2	0	0	3	0	2	6	0	0	0	0	0	0	4	2	3	5	0	2	0	3	1	0	0	0	1	5	3	0	0	0	5	1	1	0	0	3	1	0	0	3	2	0	2	1	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTAAGTGTAAGACTTTCTTGAGTTA.............................................................	25	1	118	4	4	1	4	4	0	0	1	0	0	0	0	0	0	1	1	0	0	2	0	0	23	4	0	3	8	0	0	2	0	0	0	0	11	0	0	0	0	5	0	5	0	0	2	2	0	2	1	1	0	0	1	0	7	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	1	1	3	0	0	0	0	4	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTAAGTGTAAGACTTTCTTGAG................................................................	22	1	38	3	2	3	4	0	3	1	1	1	0	0	1	0	0	0	0	0	0	6	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTAAGTGTAAGACTTTCTTGA.................................................................	21	1	8	2	1	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTAAGTGTAAGACTTTCTTGAGTTACCCG.........................................................	29	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTAAGTGTAAGACTTTCTTGAGTT..............................................................	24	1	30	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	2	0	1	4	0	0	0	0	0	0	0	1	1	0	0	0	1	0	1	0	0	3	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................TCTCAAAAATTGTTACATTTCAG.........................	23	1	3164	512	122	368	102	286	97	230	172	146	192	104	90	44	60	40	13	12	12	13	8	27	8	8	28	7	2	25	17	7	13	20	16	19	2	7	12	11	6	6	12	4	10	6	9	3	5	5	7	4	4	7	4	12	2	3	8	2	3	6	2	5	7	2	2	6	6	3	6	2	0	4	2	0	4	2	6	2	2	4	4	4	5	1	2	3	2	6	0	3	0	5	5	1	3	4	3	2	0	5	2	2	2	3	1	1	3	0	1	1	3	2	2	2	2	1	3	0	3	1	1	1	2	2	0	0	2	0	2	0	1	1	1	1	0	0	0	1	1	0	0	1	0	1	0	0	1	0	1	1	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TCTCAAAAATTGTTACATTTCA..........................	22	1	3782	507	528	378	417	283	246	276	179	174	78	108	112	81	24	43	6	45	45	15	27	18	0	5	4	7	0	2	8	5	10	5	8	5	0	7	5	7	1	3	5	3	1	3	1	0	0	0	2	4	1	3	0	1	0	2	3	5	6	4	1	5	1	0	5	3	2	2	1	1	2	0	1	0	4	2	2	1	0	3	3	0	1	0	0	3	0	0	1	0	1	0	0	0	0	1	1	0	0	0	0	0	2	1	0	3	0	2	0	2	0	0	0	1	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TCTCAAAAATTGTTACATT.............................	19	1	26	4	0	2	0	0	0	2	0	0	0	0	1	0	0	0	9	0	0	1	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................CTCAAAAATTGTTACATTT............................	19	1	7	1	3	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................CTCAAAAATTGTTACATTTCAG.........................	22	1	26	5	3	6	0	2	1	4	2	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................CTCAAAAATTGTTACATTTC...........................	20	1	11	3	3	1	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................CTCAAAAATTGTTACATTTCA..........................	21	1	40	9	6	6	5	1	6	1	1	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TCAAAAATTGTTACATTTCAG.........................	21	1	16	1	0	0	2	2	0	3	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TCAAAAATTGTTACATTTCAGA........................	22	1	17	0	0	0	4	1	2	1	0	0	4	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TCAAAAATTGTTACATTTC...........................	19	1	3	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TCAAAAATTGTTACATTTCA..........................	20	1	7	1	0	0	3	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CAAAAATTGTTACATTTCAG.........................	20	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CAAAAATTGTTACATTTCA..........................	19	1	3	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AAAAATTGTTACATTTCAG.........................	19	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................AAAATTGTTACATTTCAG.........................	18	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031692 Total small RNAs from Oregon R	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031696_2152	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001349 heterozygous dcr-2_untreated	SRR001347 ago2 untreated	S29 male head #1	SRR001338 IR non-beta-eliminated	SRR001664 homozygous dcr-2_untreated	SRR001345 ago2 non-beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	S22 female head #1	SRR001348 ago2 oxidized	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001344 dcr-2 beta-eliminated	S2 female head	V082 embryo 14-24hr	GSM379065 Zuc Heterozygote	S10 2-6h #1 (8)	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V097 CS ovary	S12 6-10h #1 (10)	S24 male body #2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S9 0-1h #3 (7)	S21 disk #2	S23 female body #2	S28 0-2d pupae	V098 dcr-2[L811fsX] ovary	V076 ML-DmBG3-C2	OSS2 Drosophila OSS cell small RNA libraries, rep1	S1 male head	GSM379057 Krimp Mutant	V090 CS  male total RNA	S32 s2+48 #2	SRR031693_4	GSM379064 Vasa Mutant	SRR014280 Ovary_rep1 w1118_P	V083 male, one day	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V088 r2d2[1] ovary total RNA	V066 r2d2[1], ovary, AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V008 S2-DRSC	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S5 imaginal disc	V001 IR-	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S19 2-4day pupae #1	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S34 KC+48 #1	S35 KC+48 #2	V018 Kc167 cell	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM379063 Vasa Heterozygote	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS6 Drosophila OSS cell small RNA libraries, rep2	V084 female, one day	V009 CMEL1	V063 CS,ovary,AGO1IP	SRR001340 IR beta-eliminated	SRR014275 Ovary_rep1 LK_P	SRR014282 Ovary_rep1 wK_P	V010 MLDmD20c5	V089 ago2[414] ovary total RNA	S33 KC-48 #2	GSM379060 SpnE Heterozygote	S27 0-1d Pupae (w)	V024 kc167 cell	V081 embryo 2-6hr	S14 0-1hr #1 (A)	GSM180328 adult heads (female heads, male heads)	V019 GM2 cell	GSM379056 Krimp Heterozygote	SRR014273 Ovary_rep1_Har_P	GSM379066 Zuc Mutant	S16 KC -48 #1	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR010959 Ago3 IP in heterozygotes	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM379061 Squ Heterozygote	V033 CMEW1 Cl.8+ cell	S11 2-6h #2 (9)	S13 6-10h #2 (11)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM379054 Flam Heterozygote	GSM379062 Squ Mutant	V011 Sg4	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR010955 Aub IP in Ago3 heterozygotes	GSM280085 WT testes (18-24nt)	GSM379058	V002 IR+	S4 female body	S31 s2+48 #1	SRR014277 Ovary_rep1 NA_P	S15 S2 -48 #1	V075 ML-DmBG1-C1	SRR001346 ago2 beta-eliminated	GSM379067 SpnE Mutant	SRR001337 WT_females beta-eliminated	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	GSM379052 Aub Heterozygote	S3 male body	S25 1st instar #1	V021 ML-DmD21 cell	GSM379051 Armi Mutant	GSM343287 Drosophila Toll 10b mutant embryos	S17 3rd inster #1	V064 ago2[414], ovary, AGO1IP	S26 1st instar #2	GSM180332 mid embryo (6-10)	GSM180335 imaginal discs	S7 12-24hr embryo	SRR010954 Aub trans-heterozygotes, oxidized	SRR010960 wt, oxidized	S18 3rd inster #2	GSM467729 WT	GSM379053 Aub Mutant	S8 S2-48,+48, KC-48, +48 mix	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM180333 late embryo (12-24)	SRR032094 ago2 knockdown	GSM379050 Armi Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM280084 loqs-/- ovaries (18-29nt)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	V028 CMEW1 Cl.8+ cell	V026 1182-4H cell	GSM180331 early embryo (2-6)	S30 s2-48 #2	V025 S2R+ cell	S20 2-4day pupae#2	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	GSM239052 S2 cells, non beta-eliminated	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379059	GSM180329 adult bodies (female bodies, male bodies)	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	GSM280088 S2cell (AGO1IP)	SRR029032 r2d2 knockdown	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	V067 S2-NP	SRR029030 dcr-2 knockdown	GSM424739 S2 parental	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized
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