Page generated on Fri Oct 15 12:01:39 2010

dme-mir-1010



dme-mir-1010

View dme-mir-1010 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-1010	120	96513	2	1	11234		85250		30	26	85250	11234

ACACCTCCGTCTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAA
.........................((((((((.((((.((((((((.....((((((....)))))).)))))))).))))....))))))))..........................-26.00
(((..((((((((((((((......((((((((.((((.((((((((.....((((((....)))))).)))))))).))))....))))))))))).))))))))..)))..)))....-39.90
Sense strand

	Size	Blast	Total	SRR031696_2152	V065 dcr-2[L811fsX], ovary, AGO1IP	V064 ago2[414], ovary, AGO1IP	V063 CS,ovary,AGO1IP	V066 r2d2[1], ovary, AGO1IP	SRR031703 Total small RNAs from r2d2 homozygous flies	V081 embryo 2-6hr	SRR029633 total small RNAs from hen1 homozygous flies	V082 embryo 14-24hr	SRR031701 Total small RNAs from r2d2 heterozygous flies	V098 dcr-2[L811fsX] ovary	V097 CS ovary	SRR031692 Total small RNAs from Oregon R	V088 r2d2[1] ovary total RNA	SRR001345 ago2 non-beta-eliminated	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR001349 heterozygous dcr-2_untreated	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR001338 IR non-beta-eliminated	SRR031699 Total small RNAs from dcr-2 homozygous flies	S29 male head #1	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR001347 ago2 untreated	SRR001664 homozygous dcr-2_untreated	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V021 ML-DmD21 cell	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V089 ago2[414] ovary total RNA	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM379064 Vasa Mutant	SRR014275 Ovary_rep1 LK_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379065 Zuc Heterozygote	GSM379056 Krimp Heterozygote	GSM379063 Vasa Heterozygote	V001 IR-	V090 CS  male total RNA	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014280 Ovary_rep1 w1118_P	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S22 female head #1	V083 male, one day	V002 IR+	SRR014273 Ovary_rep1_Har_P	SRR001343 dcr-2 non-beta-eliminated	SRR014277 Ovary_rep1 NA_P	GSM379052 Aub Heterozygote	SRR001344 dcr-2 beta-eliminated	SRR014282 Ovary_rep1 wK_P	GSM379057 Krimp Mutant	S28 0-2d pupae	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379060 SpnE Heterozygote	GSM343287 Drosophila Toll 10b mutant embryos	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM379066 Zuc Mutant	S13 6-10h #2 (11)	V076 ML-DmBG3-C2	S27 0-1d Pupae (w)	V084 female, one day	S12 6-10h #1 (10)	GSM379062 Squ Mutant	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM379054 Flam Heterozygote	GSM379051 Armi Mutant	S19 2-4day pupae #1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	OSS7 Drosophila OSS cell small RNA libraries, rep3	S2 female head	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001348 ago2 oxidized	S10 2-6h #1 (8)	GSM379058	GSM379050 Armi Heterozygote	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM280083 dcr-2-/- ovaries (18-29nt)	S21 disk #2	GSM280085 WT testes (18-24nt)	V024 kc167 cell	GSM379053 Aub Mutant	GSM280084 loqs-/- ovaries (18-29nt)	GSM379061 Squ Heterozygote	S24 male body #2	V018 Kc167 cell	S33 KC-48 #2	S14 0-1hr #1 (A)	S5 imaginal disc	S9 0-1h #3 (7)	GSM379059	S35 KC+48 #2	SRR010954 Aub trans-heterozygotes, oxidized	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR031693_4	V010 MLDmD20c5	GSM379067 SpnE Mutant	V075 ML-DmBG1-C1	SRR029031 loqs-ORF knockdown	GSM280082 WT ovaries (18-29nt)	S1 male head	GSM280088 S2cell (AGO1IP)	S17 3rd inster #1	GSM180328 adult heads (female heads, male heads)	GSM379055 Flam Mutant	SRR029028 untreated (mock)	S23 female body #2	SRR001340 IR beta-eliminated	S16 KC -48 #1	SRR029030 dcr-2 knockdown	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR010953 Aub heterozygotes, oxidized	S7 12-24hr embryo	S18 3rd inster #2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V008 S2-DRSC	S34 KC+48 #1	SRR001337 WT_females beta-eliminated	V009 CMEL1	S20 2-4day pupae#2	S11 2-6h #2 (9)	GSM467731 loq	GSM467729 WT	S32 s2+48 #2	SRR001346 ago2 beta-eliminated	S3 male body	SRR032094 ago2 knockdown	S4 female body	GSM239041 fly heads, non beta-eliminated	GSM180335 imaginal discs	SRR029032 r2d2 knockdown	GSM467730 r2d2	GSM246084 D. melanogaster adult male heads 454	GSM180332 mid embryo (6-10)	V028 CMEW1 Cl.8+ cell	SRR032096 AGO2 IP dcr2 knockdown	SRR032095 AGO1 IP dcr2 knockdown	GSM280087 S2cell (AGO2IP)	SRR010956 Piwi IP in Ago3 heterozygotes	S25 1st instar #1	SRR010959 Ago3 IP in heterozygotes	S8 S2-48,+48, KC-48, +48 mix	SRR010955 Aub IP in Ago3 heterozygotes	V033 CMEW1 Cl.8+ cell	GSM180333 late embryo (12-24)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180331 early embryo (2-6)	GSM180334 larvae: 1st instar and 3rd instars	SRR032092 mock oxidized	SRR029033 lacZ knockdown	GSM180330 very early embryo (0-1)	S30 s2-48 #2	SRR032093 ago1 knockdown	GSM239052 S2 cells, non beta-eliminated	V019 GM2 cell	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180329 adult bodies (female bodies, male bodies)	GSM239050 fly heads, beta-eliminated	S31 s2+48 #1	SRR010960 wt, oxidized	SRR029029 dcr-1 knockdown	V011 Sg4	V067 S2-NP	SRR010951 Ago3 heterozygotes, oxidized	V020 S2R+ cell	V026 1182-4H cell	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	V025 S2R+ cell	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S26 1st instar #2	S15 S2 -48 #1	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental
.CACCTCCGTCTTTGTGCTCAACG................................................................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAGTGGTGTAGATGAAACAAATT......................................................................	25	1	82	0	0	0	0	0	0	7	0	0	0	1	7	0	2	0	0	0	1	0	0	0	8	0	0	3	0	5	3	0	0	0	4	0	0	5	0	0	3	0	0	0	0	0	0	0	2	0	0	2	1	0	2	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	4	3	0	0	0	0	0	0	0	3	0	1	0	3	0	6	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAGTGGTGTAGATGAAACAA.........................................................................	22	1	92	0	1	0	1	0	2	29	0	11	0	9	12	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	2	0	0	1	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	1	0	1	0	0	1	2	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAGTGGTGTAGATGAAACAAATTT.....................................................................	26	1	22	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	3	0	1	0	1	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAGTGGTGTAGATGAAACAAA........................................................................	23	1	8	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAGTGGTGTAGATGAAA............................................................................	19	1	147	0	0	0	0	0	0	26	0	20	0	7	16	0	2	0	0	0	1	0	0	0	0	0	0	1	5	0	4	0	0	0	0	1	0	0	1	3	4	2	1	3	3	0	0	0	0	0	0	3	0	0	1	0	11	0	0	0	0	0	1	3	0	0	0	2	0	0	1	0	1	0	0	0	2	1	0	0	0	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	1	0	1	0	2	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAGTGGTGTAGATGAAACAAAT.......................................................................	24	1	21	0	0	0	0	0	0	1	0	1	0	1	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	3	3	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAGTGGTGTAGATGAAAC...........................................................................	20	1	1329	2	14	15	10	7	12	283	2	146	2	74	136	0	30	1	3	1	7	1	2	16	3	0	1	6	79	16	29	11	6	3	9	9	2	1	9	8	8	15	2	9	16	5	4	0	6	0	0	2	2	11	6	0	57	0	0	3	15	18	7	11	16	1	4	4	0	2	7	9	5	1	3	0	4	1	0	6	0	5	0	11	0	0	1	1	11	11	3	0	1	0	2	0	2	7	2	2	1	3	0	1	0	3	0	2	5	1	0	1	0	2	0	1	2	10	0	5	0	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	3	1	2	1	0	0	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAGTGGTGTAGATGAAACAAATTTA....................................................................	27	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAGTGGTGTAGATGAAACA..........................................................................	21	1	9449	1	46	44	47	38	18	2417	4	1151	12	540	929	17	140	9	20	8	76	1	7	177	68	3	2	34	161	75	168	87	13	35	35	22	4	14	53	66	78	40	2	135	120	35	19	1	36	1	0	14	13	160	40	9	28	3	3	16	233	142	89	68	161	2	5	5	5	6	124	7	6	26	7	1	114	11	9	25	7	56	1	24	10	9	17	31	37	44	15	37	34	4	61	0	51	68	24	3	33	61	1	15	0	59	10	8	12	25	0	14	23	13	0	27	23	23	1	8	1	30	13	14	1	3	13	0	4	0	9	0	1	0	2	1	8	14	15	6	13	0	13	0	8	0	4	3	1	3	4	11	7	0	6	4	0	0	0	0	5	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTAAGTGGTGTAGATGAA.............................................................................	18	1	58	0	0	0	0	0	1	10	3	3	0	3	1	0	1	0	1	0	0	0	0	9	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	2	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	1	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TAAGTGGTGTAGATGAAAC...........................................................................	19	1	6	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TAAGTGGTGTAGATGAAACA..........................................................................	20	1	29	0	1	2	0	1	0	1	0	1	0	0	7	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TAAGTGGTGTAGATGAAACAA.........................................................................	21	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................ACCTATCGTTCCATTTGC..........................	18	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................ACCTATCGTTCCATTTGCA.........................	19	1	7	1	0	0	0	1	3	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................CCTATCGTTCCATTTGCA.........................	18	1	5	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................CCTATCGTTCCATTTGCAG........................	19	1	19	0	0	1	9	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................CCTATCGTTCCATTTGC..........................	17	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTATCGTTCCATTTGCAGC.......................	19	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTATCGTTCCATTTGCAG........................	18	1	18	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	2	0	0	0	0	2	2	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR031696_2152	V065 dcr-2[L811fsX], ovary, AGO1IP	V064 ago2[414], ovary, AGO1IP	V063 CS,ovary,AGO1IP	V066 r2d2[1], ovary, AGO1IP	SRR031703 Total small RNAs from r2d2 homozygous flies	V081 embryo 2-6hr	SRR029633 total small RNAs from hen1 homozygous flies	V082 embryo 14-24hr	SRR031701 Total small RNAs from r2d2 heterozygous flies	V098 dcr-2[L811fsX] ovary	V097 CS ovary	SRR031692 Total small RNAs from Oregon R	V088 r2d2[1] ovary total RNA	SRR001345 ago2 non-beta-eliminated	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR001349 heterozygous dcr-2_untreated	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR001338 IR non-beta-eliminated	SRR031699 Total small RNAs from dcr-2 homozygous flies	S29 male head #1	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR001347 ago2 untreated	SRR001664 homozygous dcr-2_untreated	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V021 ML-DmD21 cell	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V089 ago2[414] ovary total RNA	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM379064 Vasa Mutant	SRR014275 Ovary_rep1 LK_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379065 Zuc Heterozygote	GSM379056 Krimp Heterozygote	GSM379063 Vasa Heterozygote	V001 IR-	V090 CS  male total RNA	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014280 Ovary_rep1 w1118_P	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S22 female head #1	V083 male, one day	V002 IR+	SRR014273 Ovary_rep1_Har_P	SRR001343 dcr-2 non-beta-eliminated	SRR014277 Ovary_rep1 NA_P	GSM379052 Aub Heterozygote	SRR001344 dcr-2 beta-eliminated	SRR014282 Ovary_rep1 wK_P	GSM379057 Krimp Mutant	S28 0-2d pupae	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379060 SpnE Heterozygote	GSM343287 Drosophila Toll 10b mutant embryos	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM379066 Zuc Mutant	S13 6-10h #2 (11)	V076 ML-DmBG3-C2	S27 0-1d Pupae (w)	V084 female, one day	S12 6-10h #1 (10)	GSM379062 Squ Mutant	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM379054 Flam Heterozygote	GSM379051 Armi Mutant	S19 2-4day pupae #1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	OSS7 Drosophila OSS cell small RNA libraries, rep3	S2 female head	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001348 ago2 oxidized	S10 2-6h #1 (8)	GSM379058	GSM379050 Armi Heterozygote	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM280083 dcr-2-/- ovaries (18-29nt)	S21 disk #2	GSM280085 WT testes (18-24nt)	V024 kc167 cell	GSM379053 Aub Mutant	GSM280084 loqs-/- ovaries (18-29nt)	GSM379061 Squ Heterozygote	S24 male body #2	V018 Kc167 cell	S33 KC-48 #2	S14 0-1hr #1 (A)	S5 imaginal disc	S9 0-1h #3 (7)	GSM379059	S35 KC+48 #2	SRR010954 Aub trans-heterozygotes, oxidized	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR031693_4	V010 MLDmD20c5	GSM379067 SpnE Mutant	V075 ML-DmBG1-C1	SRR029031 loqs-ORF knockdown	GSM280082 WT ovaries (18-29nt)	S1 male head	GSM280088 S2cell (AGO1IP)	S17 3rd inster #1	GSM180328 adult heads (female heads, male heads)	GSM379055 Flam Mutant	SRR029028 untreated (mock)	S23 female body #2	SRR001340 IR beta-eliminated	S16 KC -48 #1	SRR029030 dcr-2 knockdown	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR010953 Aub heterozygotes, oxidized	S7 12-24hr embryo	S18 3rd inster #2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V008 S2-DRSC	S34 KC+48 #1	SRR001337 WT_females beta-eliminated	V009 CMEL1	S20 2-4day pupae#2	S11 2-6h #2 (9)	GSM467731 loq	GSM467729 WT	S32 s2+48 #2	SRR001346 ago2 beta-eliminated	S3 male body	SRR032094 ago2 knockdown	S4 female body	GSM239041 fly heads, non beta-eliminated	GSM180335 imaginal discs	SRR029032 r2d2 knockdown	GSM467730 r2d2	GSM246084 D. melanogaster adult male heads 454	GSM180332 mid embryo (6-10)	V028 CMEW1 Cl.8+ cell	SRR032096 AGO2 IP dcr2 knockdown	SRR032095 AGO1 IP dcr2 knockdown	GSM280087 S2cell (AGO2IP)	SRR010956 Piwi IP in Ago3 heterozygotes	S25 1st instar #1	SRR010959 Ago3 IP in heterozygotes	S8 S2-48,+48, KC-48, +48 mix	SRR010955 Aub IP in Ago3 heterozygotes	V033 CMEW1 Cl.8+ cell	GSM180333 late embryo (12-24)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180331 early embryo (2-6)	GSM180334 larvae: 1st instar and 3rd instars	SRR032092 mock oxidized	SRR029033 lacZ knockdown	GSM180330 very early embryo (0-1)	S30 s2-48 #2	SRR032093 ago1 knockdown	GSM239052 S2 cells, non beta-eliminated	V019 GM2 cell	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180329 adult bodies (female bodies, male bodies)	GSM239050 fly heads, beta-eliminated	S31 s2+48 #1	SRR010960 wt, oxidized	SRR029029 dcr-1 knockdown	V011 Sg4	V067 S2-NP	SRR010951 Ago3 heterozygotes, oxidized	V020 S2R+ cell	V026 1182-4H cell	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	V025 S2R+ cell	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S26 1st instar #2	S15 S2 -48 #1	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental
.........................................................................TTCACCTATCGTTCCATTTGCA.........................	22	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................CACCTATCGTTCCATTTGCA.........................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0