Page generated on Fri Oct 15 12:01:50 2010

dme-mir-1014



dme-mir-1014

View dme-mir-1014 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-1014	117	3013	3		1262	28	1720		6	24	1262	1720

TGCCCTCGCTGGCCTTTTCTCAAGGTATAATGGAAATAGATTTTAATCGCAGGCGCGTCAGTGGTTGAATTAAAATTCATTTTCATTTGCAGTTACTGGATACAACATTCATCTGAT
........................(((.(((((((((..((((((((..(((.(((....))).))).))))))))..))))))))))))...........................-21.00
...((..(((((((((.....)))))..(((((((((..((((((((..(((.(((....))).))).))))))))..)))))))))..))))....))..................-26.00
Sense strand

	Size	Blast	Total	V098 dcr-2[L811fsX] ovary	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V090 CS  male total RNA	V083 male, one day	V097 CS ovary	V063 CS,ovary,AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	V088 r2d2[1] ovary total RNA	V084 female, one day	V082 embryo 14-24hr	V021 ML-DmD21 cell	V066 r2d2[1], ovary, AGO1IP	S24 male body #2	V064 ago2[414], ovary, AGO1IP	V089 ago2[414] ovary total RNA	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S9 0-1h #3 (7)	V081 embryo 2-6hr	SRR014280 Ovary_rep1 w1118_P	S19 2-4day pupae #1	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S28 0-2d pupae	V033 CMEW1 Cl.8+ cell	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V002 IR+	S23 female body #2	SRR031703 Total small RNAs from r2d2 homozygous flies	V001 IR-	SRR029633 total small RNAs from hen1 homozygous flies	S17 3rd inster #1	V028 CMEW1 Cl.8+ cell	S27 0-1d Pupae (w)	S3 male body	SRR031696_2152	SRR031692 Total small RNAs from Oregon R	GSM379059	S35 KC+48 #2	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031699 Total small RNAs from dcr-2 homozygous flies	GSM379050 Armi Heterozygote	GSM379063 Vasa Heterozygote	GSM180329 adult bodies (female bodies, male bodies)	S4 female body	GSM379051 Armi Mutant	GSM180334 larvae: 1st instar and 3rd instars	S25 1st instar #1	S10 2-6h #1 (8)	SRR014282 Ovary_rep1 wK_P	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379057 Krimp Mutant	SRR001347 ago2 untreated	GSM379065 Zuc Heterozygote	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR010956 Piwi IP in Ago3 heterozygotes	GSM379054 Flam Heterozygote	S18 3rd inster #2	GSM467729 WT	GSM379064 Vasa Mutant	S5 imaginal disc	S21 disk #2	GSM379061 Squ Heterozygote	SRR031701 Total small RNAs from r2d2 heterozygous flies	S26 1st instar #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S7 12-24hr embryo	SRR001337 WT_females beta-eliminated	V076 ML-DmBG3-C2	SRR001349 heterozygous dcr-2_untreated	SRR010954 Aub trans-heterozygotes, oxidized	SRR001345 ago2 non-beta-eliminated	SRR014275 Ovary_rep1 LK_P	GSM467731 loq	GSM379055 Flam Mutant	V026 1182-4H cell	SRR014277 Ovary_rep1 NA_P	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V011 Sg4	S20 2-4day pupae#2	SRR001664 homozygous dcr-2_untreated	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM379060 SpnE Heterozygote	GSM280083 dcr-2-/- ovaries (18-29nt)	V024 kc167 cell	S12 6-10h #1 (10)	SRR010953 Aub heterozygotes, oxidized	GSM280087 S2cell (AGO2IP)	GSM379067 SpnE Mutant	GSM379058	GSM280086 WT ovaries (AGO2IP)	S29 male head #1	V008 S2-DRSC	S11 2-6h #2 (9)	GSM180333 late embryo (12-24)	V018 Kc167 cell	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	V009 CMEL1	S16 KC -48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	GSM180335 imaginal discs	GSM180328 adult heads (female heads, male heads)	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	S32 s2+48 #2	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR031693_4	S13 6-10h #2 (11)	GSM379056 Krimp Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	V010 MLDmD20c5	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM280084 loqs-/- ovaries (18-29nt)	GSM379052 Aub Heterozygote	S34 KC+48 #1	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR001343 dcr-2 non-beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	SRR014273 Ovary_rep1_Har_P	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	S33 KC-48 #2	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM379053 Aub Mutant	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR032095 AGO1 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	GSM280088 S2cell (AGO1IP)	SRR010959 Ago3 IP in heterozygotes	GSM180331 early embryo (2-6)	SRR029032 r2d2 knockdown	S8 S2-48,+48, KC-48, +48 mix	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	SRR001344 dcr-2 beta-eliminated	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	V075 ML-DmBG1-C1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S30 s2-48 #2	GSM379062 Squ Mutant	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	S22 female head #1	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	SRR001338 IR non-beta-eliminated	SRR029030 dcr-2 knockdown	GSM239052 S2 cells, non beta-eliminated	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	S2 female head	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	GSM280085 WT testes (18-24nt)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM379066 Zuc Mutant
........................GTATAATGGAAATAGATTTTAA.......................................................................	22	1	327	40	6	18	19	10	30	23	3	14	8	1	21	20	6	4	9	17	11	4	6	3	1	2	8	0	1	4	4	0	2	4	2	1	2	6	3	0	2	0	0	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	2	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTATAATGGAAATAGATTT..........................................................................	19	1	5	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTATAATGGAAATAGATT...........................................................................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTATAATGGAAATAGATTTT.........................................................................	20	1	248	33	26	47	19	10	23	21	2	5	0	0	12	0	23	7	2	0	0	0	2	1	1	1	0	1	0	1	1	0	3	0	1	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTATAATGGAAATAGATTTTAAT......................................................................	23	1	382	60	32	52	36	43	9	12	16	22	15	21	5	4	1	5	7	0	10	3	1	6	3	3	5	1	0	1	0	2	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTATAATGGAAATAGATTTTA........................................................................	21	1	266	29	18	32	15	20	23	31	0	10	2	2	14	3	7	5	7	0	0	0	1	13	0	3	9	0	1	1	8	0	2	0	0	0	0	2	1	0	0	0	3	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TATAATGGAAATAGATTTTAAT......................................................................	22	1	25	5	1	5	0	2	0	0	1	1	0	3	0	0	1	1	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TATAATGGAAATAGATTTTAA.......................................................................	21	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ATAATGGAAATAGATTTTAATC.....................................................................	22	1	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ATAATGGAAATAGATTTTAAT......................................................................	21	1	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TAATGGAAATAGATTTTAATCG....................................................................	22	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GATTTTAATCGCAGGCGCGTCAGT.......................................................	24	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCGCAGGCGCGTCAGTGGTTGAAT...............................................	24	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................AAATTCATTTTCATTTGCAG.........................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AAATTCATTTTCATTTGCAGT........................	21	1	12	1	0	1	1	0	0	0	0	0	0	1	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AATTCATTTTCATTTGCAGT........................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................ATTCATTTTCATTTGCAGT........................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V098 dcr-2[L811fsX] ovary	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V090 CS  male total RNA	V083 male, one day	V097 CS ovary	V063 CS,ovary,AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	V088 r2d2[1] ovary total RNA	V084 female, one day	V082 embryo 14-24hr	V021 ML-DmD21 cell	V066 r2d2[1], ovary, AGO1IP	S24 male body #2	V064 ago2[414], ovary, AGO1IP	V089 ago2[414] ovary total RNA	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S9 0-1h #3 (7)	V081 embryo 2-6hr	SRR014280 Ovary_rep1 w1118_P	S19 2-4day pupae #1	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S28 0-2d pupae	V033 CMEW1 Cl.8+ cell	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V002 IR+	S23 female body #2	SRR031703 Total small RNAs from r2d2 homozygous flies	V001 IR-	SRR029633 total small RNAs from hen1 homozygous flies	S17 3rd inster #1	V028 CMEW1 Cl.8+ cell	S27 0-1d Pupae (w)	S3 male body	SRR031696_2152	SRR031692 Total small RNAs from Oregon R	GSM379059	S35 KC+48 #2	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031699 Total small RNAs from dcr-2 homozygous flies	GSM379050 Armi Heterozygote	GSM379063 Vasa Heterozygote	GSM180329 adult bodies (female bodies, male bodies)	S4 female body	GSM379051 Armi Mutant	GSM180334 larvae: 1st instar and 3rd instars	S25 1st instar #1	S10 2-6h #1 (8)	SRR014282 Ovary_rep1 wK_P	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379057 Krimp Mutant	SRR001347 ago2 untreated	GSM379065 Zuc Heterozygote	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR010956 Piwi IP in Ago3 heterozygotes	GSM379054 Flam Heterozygote	S18 3rd inster #2	GSM467729 WT	GSM379064 Vasa Mutant	S5 imaginal disc	S21 disk #2	GSM379061 Squ Heterozygote	SRR031701 Total small RNAs from r2d2 heterozygous flies	S26 1st instar #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S7 12-24hr embryo	SRR001337 WT_females beta-eliminated	V076 ML-DmBG3-C2	SRR001349 heterozygous dcr-2_untreated	SRR010954 Aub trans-heterozygotes, oxidized	SRR001345 ago2 non-beta-eliminated	SRR014275 Ovary_rep1 LK_P	GSM467731 loq	GSM379055 Flam Mutant	V026 1182-4H cell	SRR014277 Ovary_rep1 NA_P	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V011 Sg4	S20 2-4day pupae#2	SRR001664 homozygous dcr-2_untreated	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM379060 SpnE Heterozygote	GSM280083 dcr-2-/- ovaries (18-29nt)	V024 kc167 cell	S12 6-10h #1 (10)	SRR010953 Aub heterozygotes, oxidized	GSM280087 S2cell (AGO2IP)	GSM379067 SpnE Mutant	GSM379058	GSM280086 WT ovaries (AGO2IP)	S29 male head #1	V008 S2-DRSC	S11 2-6h #2 (9)	GSM180333 late embryo (12-24)	V018 Kc167 cell	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	V009 CMEL1	S16 KC -48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	GSM180335 imaginal discs	GSM180328 adult heads (female heads, male heads)	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	S32 s2+48 #2	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR031693_4	S13 6-10h #2 (11)	GSM379056 Krimp Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	V010 MLDmD20c5	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM280084 loqs-/- ovaries (18-29nt)	GSM379052 Aub Heterozygote	S34 KC+48 #1	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR001343 dcr-2 non-beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	SRR014273 Ovary_rep1_Har_P	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	S33 KC-48 #2	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM379053 Aub Mutant	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR032095 AGO1 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	GSM280088 S2cell (AGO1IP)	SRR010959 Ago3 IP in heterozygotes	GSM180331 early embryo (2-6)	SRR029032 r2d2 knockdown	S8 S2-48,+48, KC-48, +48 mix	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	SRR001344 dcr-2 beta-eliminated	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	V075 ML-DmBG1-C1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S30 s2-48 #2	GSM379062 Squ Mutant	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	S22 female head #1	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	SRR001338 IR non-beta-eliminated	SRR029030 dcr-2 knockdown	GSM239052 S2 cells, non beta-eliminated	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	S2 female head	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	GSM280085 WT testes (18-24nt)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM379066 Zuc Mutant
...........GCCTTTTCTCAAGGTATAAT......................................................................................	20	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................CAGTGGTTGAATTAAAATTCAT.....................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0