Page generated on Fri Oct 15 12:01:27 2010

dme-mir-125



dme-mir-125

View dme-mir-125 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-125	159	465914	10	2	459382	2	5835	5	698	17	459382	5835

GGCATATGTAAATATTGGCATTGGTGACATGTGCAAATGTTTGTATGGCTGATTCCCTGAGACCCTAACTTGTGACTTTTAATACCAGTTTCACAAGTTTTGATCTCCGGTATTGGACGCAAACTTGCTGATGTTAGTAAAAAATAAGGCAAAAACGAA
.........................(((((..((((..((((((....(..((..((.((((.(..(((((((((..((.......))..)))))))))..).)))).)).))..)..))))))))))..)))))........................-31.70
.((.((((((((((((.((((((....)).)))).)))))))))))).(..((..((.((((.(..(((((((((..((.......))..)))))))))..).)))).)).))..)..))....(((((..((((.......)))).))))).......-39.60
Sense strand

	Size	Blast	Total	SRR031696_2152	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	S29 male head #1	SRR001345 ago2 non-beta-eliminated	SRR031692 Total small RNAs from Oregon R	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S24 male body #2	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR001338 IR non-beta-eliminated	SRR001349 heterozygous dcr-2_untreated	SRR001343 dcr-2 non-beta-eliminated	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR001664 homozygous dcr-2_untreated	SRR001347 ago2 untreated	S27 0-1d Pupae (w)	S22 female head #1	S28 0-2d pupae	S35 KC+48 #2	S2 female head	V076 ML-DmBG3-C2	SRR001344 dcr-2 beta-eliminated	S9 0-1h #3 (7)	S23 female body #2	GSM467729 WT	V090 CS  male total RNA	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM280085 WT testes (18-24nt)	S34 KC+48 #1	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM467730 r2d2	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	S18 3rd inster #2	V098 dcr-2[L811fsX] ovary	S1 male head	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR031693_4	V063 CS,ovary,AGO1IP	S20 2-4day pupae#2	V097 CS ovary	V083 male, one day	V088 r2d2[1] ovary total RNA	GSM239041 fly heads, non beta-eliminated	GSM379065 Zuc Heterozygote	GSM180328 adult heads (female heads, male heads)	V066 r2d2[1], ovary, AGO1IP	S32 s2+48 #2	GSM379057 Krimp Mutant	V064 ago2[414], ovary, AGO1IP	GSM379064 Vasa Mutant	S3 male body	V084 female, one day	GSM379056 Krimp Heterozygote	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR001348 ago2 oxidized	GSM239050 fly heads, beta-eliminated	S8 S2-48,+48, KC-48, +48 mix	S4 female body	GSM379051 Armi Mutant	GSM379060 SpnE Heterozygote	GSM379066 Zuc Mutant	S31 s2+48 #1	GSM379052 Aub Heterozygote	GSM379059	SRR032092 mock oxidized	SRR014275 Ovary_rep1 LK_P	GSM467731 loq	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014273 Ovary_rep1_Har_P	V089 ago2[414] ovary total RNA	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379054 Flam Heterozygote	SRR014277 Ovary_rep1 NA_P	GSM379062 Squ Mutant	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379053 Aub Mutant	GSM379063 Vasa Heterozygote	GSM379050 Armi Heterozygote	S10 2-6h #1 (8)	GSM180329 adult bodies (female bodies, male bodies)	SRR001337 WT_females beta-eliminated	S19 2-4day pupae #1	SRR014282 Ovary_rep1 wK_P	V008 S2-DRSC	SRR014280 Ovary_rep1 w1118_P	SRR001346 ago2 beta-eliminated	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379058	V075 ML-DmBG1-C1	S5 imaginal disc	GSM379061 Squ Heterozygote	GSM280082 WT ovaries (18-29nt)	S21 disk #2	GSM239052 S2 cells, non beta-eliminated	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379067 SpnE Mutant	GSM280084 loqs-/- ovaries (18-29nt)	V024 kc167 cell	GSM246084 D. melanogaster adult male heads 454	SRR001340 IR beta-eliminated	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM180334 larvae: 1st instar and 3rd instars	OSS7 Drosophila OSS cell small RNA libraries, rep3	V026 1182-4H cell	S17 3rd inster #1	SRR010959 Ago3 IP in heterozygotes	V009 CMEL1	GSM379055 Flam Mutant	V011 Sg4	SRR010955 Aub IP in Ago3 heterozygotes	OSS8 Drosophila OSS cell small RNA libraries, rep4	S33 KC-48 #2	SRR010954 Aub trans-heterozygotes, oxidized	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S30 s2-48 #2	V018 Kc167 cell	SRR010953 Aub heterozygotes, oxidized	SRR029029 dcr-1 knockdown	GSM180335 imaginal discs	SRR010956 Piwi IP in Ago3 heterozygotes	S25 1st instar #1	S13 6-10h #2 (11)	SRR001342 WT_males beta-eliminated	GSM239051 S2 cells, beta-eliminated	SRR010960 wt, oxidized	V021 ML-DmD21 cell	S7 12-24hr embryo	GSM280087 S2cell (AGO2IP)	V001 IR-	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010951 Ago3 heterozygotes, oxidized	S14 0-1hr #1 (A)	S11 2-6h #2 (9)	SRR029032 r2d2 knockdown	V033 CMEW1 Cl.8+ cell	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR029028 untreated (mock)	V082 embryo 14-24hr	S12 6-10h #1 (10)	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR032094 ago2 knockdown	V010 MLDmD20c5	S15 S2 -48 #1	V025 S2R+ cell	V020 S2R+ cell	GSM280088 S2cell (AGO1IP)	SRR029030 dcr-2 knockdown	S26 1st instar #2	GSM180333 late embryo (12-24)	V002 IR+	V028 CMEW1 Cl.8+ cell	GSM180331 early embryo (2-6)	GSM180332 mid embryo (6-10)	S16 KC -48 #1	V081 embryo 2-6hr	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR032093 ago1 knockdown	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM180330 very early embryo (0-1)	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V067 S2-NP	GSM280086 WT ovaries (AGO2IP)	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR032095 AGO1 IP dcr2 knockdown	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental
...............................TGCAAATGTTTGTATGGCTGAT..........................................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GCAAATGTTTGTATGGCTGATT.........................................................................................................	22	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ATTCCCTGAGACCCTAACTTGTGA....................................................................................	24	1	4	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ATTCCCTGAGACCCTAACTTGTG.....................................................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTCCCTGAGACCCTAACTTGTGA....................................................................................	23	1	7	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTCCCTGAGACCCTAACTTGT......................................................................................	21	1	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTCCCTGAGACCCTAACTTGTG.....................................................................................	22	1	7	1	0	0	0	0	0	0	0	0	1	1	0	0	0	2	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCCCTGAGACCCTAACTTGTGAC...................................................................................	23	1	1720	203	51	57	78	20	38	31	32	33	24	8	48	23	19	0	19	19	28	13	30	16	15	4	6	13	8	321	6	0	3	1	3	390	3	3	6	3	7	0	2	0	5	0	4	0	3	1	5	2	4	3	0	3	2	0	0	0	3	1	2	4	0	0	1	3	0	0	0	1	68	0	1	0	0	0	1	0	1	0	1	1	0	1	0	2	0	2	0	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCCCTGAGACCCTAACTTGTGACTTTTAA.............................................................................	29	1	26	0	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCCCTGAGACCCTAACTTGTGACTTT................................................................................	26	1	649	180	54	50	36	16	40	29	29	22	6	4	5	10	6	0	11	18	1	17	2	11	8	1	3	0	0	9	1	0	0	2	3	17	14	14	2	0	1	2	1	0	3	1	0	0	0	0	2	0	1	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	3	0	0	0	2	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCCCTGAGACCCTAACTTGTGACTTTTAAT............................................................................	30	1	31	0	2	5	0	0	6	2	3	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	5	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCCCTGAGACCCTAACTTGTGACTTTTAATA...........................................................................	31	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCCCTGAGACCCTAACTTGTGACT..................................................................................	24	1	3996	967	320	323	299	150	190	203	141	108	51	12	93	78	58	2	71	58	13	110	12	17	40	6	43	25	19	107	10	13	1	15	1	101	86	86	2	1	22	3	3	1	6	1	1	0	9	1	12	0	5	0	0	0	8	0	0	0	3	0	2	5	1	0	1	0	0	0	0	1	28	0	1	0	2	0	0	1	2	1	0	0	3	3	7	1	0	2	2	3	0	0	1	1	0	0	0	6	1	0	1	0	0	1	0	1	3	0	1	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................TTAGTAAAAAATAAGGCAA.......	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GTAAAAAATAAGGCAAAAACG..	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GTAAAAAATAAGGCAAAA.....	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR031696_2152	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	S29 male head #1	SRR001345 ago2 non-beta-eliminated	SRR031692 Total small RNAs from Oregon R	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S24 male body #2	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR001338 IR non-beta-eliminated	SRR001349 heterozygous dcr-2_untreated	SRR001343 dcr-2 non-beta-eliminated	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR001664 homozygous dcr-2_untreated	SRR001347 ago2 untreated	S27 0-1d Pupae (w)	S22 female head #1	S28 0-2d pupae	S35 KC+48 #2	S2 female head	V076 ML-DmBG3-C2	SRR001344 dcr-2 beta-eliminated	S9 0-1h #3 (7)	S23 female body #2	GSM467729 WT	V090 CS  male total RNA	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM280085 WT testes (18-24nt)	S34 KC+48 #1	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM467730 r2d2	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	S18 3rd inster #2	V098 dcr-2[L811fsX] ovary	S1 male head	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR031693_4	V063 CS,ovary,AGO1IP	S20 2-4day pupae#2	V097 CS ovary	V083 male, one day	V088 r2d2[1] ovary total RNA	GSM239041 fly heads, non beta-eliminated	GSM379065 Zuc Heterozygote	GSM180328 adult heads (female heads, male heads)	V066 r2d2[1], ovary, AGO1IP	S32 s2+48 #2	GSM379057 Krimp Mutant	V064 ago2[414], ovary, AGO1IP	GSM379064 Vasa Mutant	S3 male body	V084 female, one day	GSM379056 Krimp Heterozygote	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR001348 ago2 oxidized	GSM239050 fly heads, beta-eliminated	S8 S2-48,+48, KC-48, +48 mix	S4 female body	GSM379051 Armi Mutant	GSM379060 SpnE Heterozygote	GSM379066 Zuc Mutant	S31 s2+48 #1	GSM379052 Aub Heterozygote	GSM379059	SRR032092 mock oxidized	SRR014275 Ovary_rep1 LK_P	GSM467731 loq	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014273 Ovary_rep1_Har_P	V089 ago2[414] ovary total RNA	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379054 Flam Heterozygote	SRR014277 Ovary_rep1 NA_P	GSM379062 Squ Mutant	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379053 Aub Mutant	GSM379063 Vasa Heterozygote	GSM379050 Armi Heterozygote	S10 2-6h #1 (8)	GSM180329 adult bodies (female bodies, male bodies)	SRR001337 WT_females beta-eliminated	S19 2-4day pupae #1	SRR014282 Ovary_rep1 wK_P	V008 S2-DRSC	SRR014280 Ovary_rep1 w1118_P	SRR001346 ago2 beta-eliminated	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379058	V075 ML-DmBG1-C1	S5 imaginal disc	GSM379061 Squ Heterozygote	GSM280082 WT ovaries (18-29nt)	S21 disk #2	GSM239052 S2 cells, non beta-eliminated	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379067 SpnE Mutant	GSM280084 loqs-/- ovaries (18-29nt)	V024 kc167 cell	GSM246084 D. melanogaster adult male heads 454	SRR001340 IR beta-eliminated	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM180334 larvae: 1st instar and 3rd instars	OSS7 Drosophila OSS cell small RNA libraries, rep3	V026 1182-4H cell	S17 3rd inster #1	SRR010959 Ago3 IP in heterozygotes	V009 CMEL1	GSM379055 Flam Mutant	V011 Sg4	SRR010955 Aub IP in Ago3 heterozygotes	OSS8 Drosophila OSS cell small RNA libraries, rep4	S33 KC-48 #2	SRR010954 Aub trans-heterozygotes, oxidized	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S30 s2-48 #2	V018 Kc167 cell	SRR010953 Aub heterozygotes, oxidized	SRR029029 dcr-1 knockdown	GSM180335 imaginal discs	SRR010956 Piwi IP in Ago3 heterozygotes	S25 1st instar #1	S13 6-10h #2 (11)	SRR001342 WT_males beta-eliminated	GSM239051 S2 cells, beta-eliminated	SRR010960 wt, oxidized	V021 ML-DmD21 cell	S7 12-24hr embryo	GSM280087 S2cell (AGO2IP)	V001 IR-	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010951 Ago3 heterozygotes, oxidized	S14 0-1hr #1 (A)	S11 2-6h #2 (9)	SRR029032 r2d2 knockdown	V033 CMEW1 Cl.8+ cell	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR029028 untreated (mock)	V082 embryo 14-24hr	S12 6-10h #1 (10)	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR032094 ago2 knockdown	V010 MLDmD20c5	S15 S2 -48 #1	V025 S2R+ cell	V020 S2R+ cell	GSM280088 S2cell (AGO1IP)	SRR029030 dcr-2 knockdown	S26 1st instar #2	GSM180333 late embryo (12-24)	V002 IR+	V028 CMEW1 Cl.8+ cell	GSM180331 early embryo (2-6)	GSM180332 mid embryo (6-10)	S16 KC -48 #1	V081 embryo 2-6hr	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR032093 ago1 knockdown	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM180330 very early embryo (0-1)	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V067 S2-NP	GSM280086 WT ovaries (AGO2IP)	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR032095 AGO1 IP dcr2 knockdown	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental
........................................TTGTATGGCTGATTCCCTGA...................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................CTGATTCCCTGAGACCCTAACTTG.......................................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TGATTCCCTGAGACCCTAACTT........................................................................................	22	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTCCCTGAGACCCTAACT.........................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................AGACCCTAACTTGTGACTTT................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TTTTAATACCAGTTTCACAAGTT............................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TTCACAAGTTTTGATCTCCGGT................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ATTGGACGCAAACTTGCTG.............................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CGCAAACTTGCTGATGTTAGTA....................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0