Page generated on Fri Oct 15 12:01:32 2010

dme-mir-133



dme-mir-133

View dme-mir-133 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-133	147	263150	4		6892		256257	2	3	15	256257	6892

GATTTCACCGCATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAACTGCGATGGA
..............................((((((((..(((((((((((((....((..(((((((........)).)))))..))...)))))))))))))..)))).))))................................-37.30
...((((.(((((((.((..((((......((((((((..(((((((((((((....((..(((((((........)).)))))..))...)))))))))))))..)))).))))........))))..))...))).)))).))))-48.64
Sense strand

	Size	Blast	Total	SRR031696_2152	S29 male head #1	SRR029633 total small RNAs from hen1 homozygous flies	V090 CS  male total RNA	SRR031692 Total small RNAs from Oregon R	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR001338 IR non-beta-eliminated	SRR001349 heterozygous dcr-2_untreated	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001347 ago2 untreated	SRR001664 homozygous dcr-2_untreated	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031701 Total small RNAs from r2d2 heterozygous flies	S22 female head #1	V082 embryo 14-24hr	SRR001345 ago2 non-beta-eliminated	V083 male, one day	V002 IR+	V001 IR-	S2 female head	S1 male head	S24 male body #2	SRR001343 dcr-2 non-beta-eliminated	V084 female, one day	SRR001344 dcr-2 beta-eliminated	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	S23 female body #2	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM180328 adult heads (female heads, male heads)	S9 0-1h #3 (7)	V011 Sg4	V008 S2-DRSC	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S7 12-24hr embryo	S21 disk #2	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S3 male body	S28 0-2d pupae	S5 imaginal disc	S4 female body	SRR001337 WT_females beta-eliminated	S27 0-1d Pupae (w)	S19 2-4day pupae #1	SRR031693_4	V081 embryo 2-6hr	S32 s2+48 #2	GSM280087 S2cell (AGO2IP)	GSM239052 S2 cells, non beta-eliminated	SRR001346 ago2 beta-eliminated	S20 2-4day pupae#2	S18 3rd inster #2	S35 KC+48 #2	SRR001340 IR beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM180333 late embryo (12-24)	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM467729 WT	V098 dcr-2[L811fsX] ovary	V076 ML-DmBG3-C2	S25 1st instar #1	GSM467730 r2d2	S10 2-6h #1 (8)	S34 KC+48 #1	S26 1st instar #2	S13 6-10h #2 (11)	SRR032092 mock oxidized	GSM280085 WT testes (18-24nt)	GSM180329 adult bodies (female bodies, male bodies)	S12 6-10h #1 (10)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR029032 r2d2 knockdown	GSM180335 imaginal discs	S17 3rd inster #1	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM246084 D. melanogaster adult male heads 454	OSS6 Drosophila OSS cell small RNA libraries, rep2	S33 KC-48 #2	V088 r2d2[1] ovary total RNA	OSS7 Drosophila OSS cell small RNA libraries, rep3	S30 s2-48 #2	GSM379059	S31 s2+48 #1	GSM280084 loqs-/- ovaries (18-29nt)	V097 CS ovary	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR029033 lacZ knockdown	GSM467731 loq	SRR029029 dcr-1 knockdown	V063 CS,ovary,AGO1IP	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S8 S2-48,+48, KC-48, +48 mix	SRR032094 ago2 knockdown	V089 ago2[414] ovary total RNA	SRR001342 WT_males beta-eliminated	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR029030 dcr-2 knockdown	V009 CMEL1	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR032093 ago1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	SRR029028 untreated (mock)	OSS8 Drosophila OSS cell small RNA libraries, rep4	S11 2-6h #2 (9)	GSM379056 Krimp Heterozygote	V010 MLDmD20c5	S15 S2 -48 #1	GSM379067 SpnE Mutant	V066 r2d2[1], ovary, AGO1IP	SRR014273 Ovary_rep1_Har_P	GSM379060 SpnE Heterozygote	GSM239051 S2 cells, beta-eliminated	S14 0-1hr #1 (A)	S16 KC -48 #1	GSM239050 fly heads, beta-eliminated	GSM379055 Flam Mutant	GSM280088 S2cell (AGO1IP)	GSM379051 Armi Mutant	V033 CMEW1 Cl.8+ cell	GSM379058	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR029031 loqs-ORF knockdown	GSM379065 Zuc Heterozygote	GSM379050 Armi Heterozygote	GSM180337 tissue culture cells (S2 only)	GSM379064 Vasa Mutant	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM379057 Krimp Mutant	V018 Kc167 cell	GSM180332 mid embryo (6-10)	V019 GM2 cell	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	SRR014277 Ovary_rep1 NA_P	GSM343287 Drosophila Toll 10b mutant embryos	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	V024 kc167 cell	GSM379066 Zuc Mutant	V064 ago2[414], ovary, AGO1IP	GSM280086 WT ovaries (AGO2IP)	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014282 Ovary_rep1 wK_P	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR023197 RNA Library from S2 control cells	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	GSM379063 Vasa Heterozygote	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM379053 Aub Mutant	SRR032095 AGO1 IP dcr2 knockdown	V028 CMEW1 Cl.8+ cell	SRR010959 Ago3 IP in heterozygotes	SRR014280 Ovary_rep1 w1118_P	V026 1182-4H cell	GSM180331 early embryo (2-6)	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	V075 ML-DmBG1-C1	GSM379062 Squ Mutant	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379061 Squ Heterozygote	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM424739 S2 parental	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR010951 Ago3 heterozygotes, oxidized	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR010953 Aub heterozygotes, oxidized
...........................................AGCTGGTTGACATCGGGTCAGATCT...............................................................................	25	1	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCTGGTTGACATCGGGTCAGA..................................................................................	22	1	1216	92	19	15	40	11	36	8	1	7	0	1	10	14	13	638	21	30	101	76	5	0	1	1	18	4	7	7	0	1	1	0	0	0	0	2	6	2	0	0	0	1	0	2	0	0	0	12	0	0	0	0	0	0	0	0	0	2	0	0	0	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCTGGTTGACATCGGGTC.....................................................................................	19	1	5	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCTGGTTGACATCGGGTCAG...................................................................................	21	1	95	12	0	5	6	6	9	1	0	4	0	2	0	8	1	10	4	1	2	1	0	1	0	1	0	1	1	1	0	0	11	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCTGGTTGACATCGGGTCAGATC................................................................................	24	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCTGGTTGACATCGGGTCA....................................................................................	20	1	19	9	0	0	0	0	3	1	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCTGGTTGACATCGGGTCAGAT.................................................................................	23	1	5456	784	223	249	273	159	403	72	3	101	8	9	114	194	109	1701	89	176	175	163	35	5	18	18	51	15	13	13	0	5	14	8	5	2	1	1	13	24	3	1	7	14	1	0	13	9	1	39	3	0	0	3	2	8	0	0	2	4	2	11	6	10	12	14	2	1	5	6	0	1	0	1	0	0	2	2	0	0	0	4	0	1	0	1	0	0	0	2	0	2	0	2	3	1	0	0	1	2	0	0	1	0	1	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCTGGTTGACATCGGGT......................................................................................	18	1	45	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GCTGGTTGACATCGGGTCAG...................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GCTGGTTGACATCGGGTCAGAT.................................................................................	22	1	19	6	2	1	0	1	3	1	0	0	0	0	1	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GCTGGTTGACATCGGGTCAGA..................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CTGGTTGACATCGGGTCAGA..................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CTGGTTGACATCGGGTCAGAT.................................................................................	21	1	15	1	13	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................TTGGTCCCCTTCAACCAGCT..............................................	20	1	7375	1338	1257	745	73	262	475	512	360	159	301	278	147	484	259	0	15	7	3	0	131	148	53	62	1	10	22	22	23	28	22	27	18	6	32	3	0	5	4	6	7	1	5	4	0	1	4	0	4	2	11	0	0	1	3	2	4	0	1	6	1	0	0	2	1	3	1	0	0	1	0	0	0	0	0	0	1	2	0	0	0	1	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TGGTCCCCTTCAACCAGCT..............................................	19	1	51	22	0	5	0	5	1	3	3	3	4	3	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TGGTCCCCTTCAACCAGCTG.............................................	20	1	207	52	4	28	0	11	4	7	7	28	12	6	22	2	7	0	2	0	0	0	0	1	0	1	0	3	3	3	1	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TGGTCCCCTTCAACCAGCTGTA...........................................	22	1	9	4	0	1	0	1	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TGGTCCCCTTCAACCAGCTGTAG..........................................	23	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TGGTCCCCTTCAACCAGC...............................................	18	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TGGTCCCCTTCAACCAGCTGT............................................	21	1	1124	305	22	121	4	97	19	90	44	78	60	62	57	16	12	3	50	2	4	2	4	2	5	12	2	10	12	12	4	2	0	0	0	0	0	1	0	0	4	0	0	1	0	1	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GGTCCCCTTCAACCAGCTGTA...........................................	21	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GGTCCCCTTCAACCAGCT..............................................	18	1	2	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GGTCCCCTTCAACCAGCTG.............................................	19	1	18	6	0	2	0	2	3	0	0	2	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GGTCCCCTTCAACCAGCTGT............................................	20	1	92	31	1	4	6	5	10	2	0	5	4	0	2	2	0	2	1	7	1	0	0	0	0	1	0	1	2	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................GTCCCCTTCAACCAGCTGT............................................	19	1	35	6	9	3	0	1	0	0	0	6	1	0	3	0	0	0	0	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................GTCCCCTTCAACCAGCTG.............................................	18	1	4	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TCCCCTTCAACCAGCTGT............................................	18	1	46	12	5	1	1	3	1	0	0	4	6	2	2	0	0	0	0	0	4	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR031696_2152	S29 male head #1	SRR029633 total small RNAs from hen1 homozygous flies	V090 CS  male total RNA	SRR031692 Total small RNAs from Oregon R	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR001338 IR non-beta-eliminated	SRR001349 heterozygous dcr-2_untreated	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001347 ago2 untreated	SRR001664 homozygous dcr-2_untreated	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031701 Total small RNAs from r2d2 heterozygous flies	S22 female head #1	V082 embryo 14-24hr	SRR001345 ago2 non-beta-eliminated	V083 male, one day	V002 IR+	V001 IR-	S2 female head	S1 male head	S24 male body #2	SRR001343 dcr-2 non-beta-eliminated	V084 female, one day	SRR001344 dcr-2 beta-eliminated	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	S23 female body #2	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM180328 adult heads (female heads, male heads)	S9 0-1h #3 (7)	V011 Sg4	V008 S2-DRSC	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S7 12-24hr embryo	S21 disk #2	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S3 male body	S28 0-2d pupae	S5 imaginal disc	S4 female body	SRR001337 WT_females beta-eliminated	S27 0-1d Pupae (w)	S19 2-4day pupae #1	SRR031693_4	V081 embryo 2-6hr	S32 s2+48 #2	GSM280087 S2cell (AGO2IP)	GSM239052 S2 cells, non beta-eliminated	SRR001346 ago2 beta-eliminated	S20 2-4day pupae#2	S18 3rd inster #2	S35 KC+48 #2	SRR001340 IR beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM180333 late embryo (12-24)	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM467729 WT	V098 dcr-2[L811fsX] ovary	V076 ML-DmBG3-C2	S25 1st instar #1	GSM467730 r2d2	S10 2-6h #1 (8)	S34 KC+48 #1	S26 1st instar #2	S13 6-10h #2 (11)	SRR032092 mock oxidized	GSM280085 WT testes (18-24nt)	GSM180329 adult bodies (female bodies, male bodies)	S12 6-10h #1 (10)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR029032 r2d2 knockdown	GSM180335 imaginal discs	S17 3rd inster #1	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM246084 D. melanogaster adult male heads 454	OSS6 Drosophila OSS cell small RNA libraries, rep2	S33 KC-48 #2	V088 r2d2[1] ovary total RNA	OSS7 Drosophila OSS cell small RNA libraries, rep3	S30 s2-48 #2	GSM379059	S31 s2+48 #1	GSM280084 loqs-/- ovaries (18-29nt)	V097 CS ovary	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR029033 lacZ knockdown	GSM467731 loq	SRR029029 dcr-1 knockdown	V063 CS,ovary,AGO1IP	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S8 S2-48,+48, KC-48, +48 mix	SRR032094 ago2 knockdown	V089 ago2[414] ovary total RNA	SRR001342 WT_males beta-eliminated	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR029030 dcr-2 knockdown	V009 CMEL1	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR032093 ago1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	SRR029028 untreated (mock)	OSS8 Drosophila OSS cell small RNA libraries, rep4	S11 2-6h #2 (9)	GSM379056 Krimp Heterozygote	V010 MLDmD20c5	S15 S2 -48 #1	GSM379067 SpnE Mutant	V066 r2d2[1], ovary, AGO1IP	SRR014273 Ovary_rep1_Har_P	GSM379060 SpnE Heterozygote	GSM239051 S2 cells, beta-eliminated	S14 0-1hr #1 (A)	S16 KC -48 #1	GSM239050 fly heads, beta-eliminated	GSM379055 Flam Mutant	GSM280088 S2cell (AGO1IP)	GSM379051 Armi Mutant	V033 CMEW1 Cl.8+ cell	GSM379058	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR029031 loqs-ORF knockdown	GSM379065 Zuc Heterozygote	GSM379050 Armi Heterozygote	GSM180337 tissue culture cells (S2 only)	GSM379064 Vasa Mutant	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM379057 Krimp Mutant	V018 Kc167 cell	GSM180332 mid embryo (6-10)	V019 GM2 cell	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	SRR014277 Ovary_rep1 NA_P	GSM343287 Drosophila Toll 10b mutant embryos	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	V024 kc167 cell	GSM379066 Zuc Mutant	V064 ago2[414], ovary, AGO1IP	GSM280086 WT ovaries (AGO2IP)	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014282 Ovary_rep1 wK_P	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR023197 RNA Library from S2 control cells	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	GSM379063 Vasa Heterozygote	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM379053 Aub Mutant	SRR032095 AGO1 IP dcr2 knockdown	V028 CMEW1 Cl.8+ cell	SRR010959 Ago3 IP in heterozygotes	SRR014280 Ovary_rep1 w1118_P	V026 1182-4H cell	GSM180331 early embryo (2-6)	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	V075 ML-DmBG1-C1	GSM379062 Squ Mutant	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379061 Squ Heterozygote	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM424739 S2 parental	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR010951 Ago3 heterozygotes, oxidized	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR010953 Aub heterozygotes, oxidized
..................................................................................TGGTCCCCTTCAACCAGCTGT............................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CCCCTTCAACCAGCTGTAGCC........................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AAAGCCTAGTGAACTGCGATGG.	22	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0