Page generated on Fri Oct 15 12:01:36 2010

dme-mir-13a



dme-mir-13a

View dme-mir-13a on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-13a	124	136325	6	5	3584	29	132706	4	3	18	132706	3584

GTTTGTGATCCAAGCCATAATTCTTACGTAACTCCTCAAAGGGTTGTGAAATGTCGACTATTATCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAATCGCGGCAGCGGATCAAAAAA
........................((((.(((((.((((((((((((((.(((..((......))....))).)))))))).)))))).))))).)))).........................-27.20
.(((.((((((..(((...((((.((((.(((((.((((((((((((((.(((..((......))....))).)))))))).)))))).))))).)))).))))...)))...)))))).))).-44.60
Sense strand

	Size	Blast	Total	V082 embryo 14-24hr	SRR031696_2152	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S29 male head #1	SRR031699 Total small RNAs from dcr-2 homozygous flies	V081 embryo 2-6hr	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031692 Total small RNAs from Oregon R	V002 IR+	SRR031701 Total small RNAs from r2d2 heterozygous flies	V001 IR-	SRR001345 ago2 non-beta-eliminated	SRR001349 heterozygous dcr-2_untreated	S12 6-10h #1 (10)	SRR001347 ago2 untreated	S13 6-10h #2 (11)	V066 r2d2[1], ovary, AGO1IP	SRR001664 homozygous dcr-2_untreated	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	S22 female head #1	V083 male, one day	V063 CS,ovary,AGO1IP	S28 0-2d pupae	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR001343 dcr-2 non-beta-eliminated	SRR001338 IR non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V090 CS  male total RNA	S2 female head	S10 2-6h #1 (8)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S27 0-1d Pupae (w)	S1 male head	SRR001344 dcr-2 beta-eliminated	V084 female, one day	S7 12-24hr embryo	V064 ago2[414], ovary, AGO1IP	S21 disk #2	S5 imaginal disc	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S33 KC-48 #2	V088 r2d2[1] ovary total RNA	S24 male body #2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S26 1st instar #2	S19 2-4day pupae #1	S9 0-1h #3 (7)	SRR001348 ago2 oxidized	GSM180328 adult heads (female heads, male heads)	V098 dcr-2[L811fsX] ovary	SRR031693_4	S25 1st instar #1	S32 s2+48 #2	V076 ML-DmBG3-C2	V097 CS ovary	S11 2-6h #2 (9)	GSM239041 fly heads, non beta-eliminated	V008 S2-DRSC	V067 S2-NP	V089 ago2[414] ovary total RNA	V019 GM2 cell	GSM379063 Vasa Heterozygote	GSM180333 late embryo (12-24)	GSM180332 mid embryo (6-10)	GSM379057 Krimp Mutant	GSM343287 Drosophila Toll 10b mutant embryos	V024 kc167 cell	V075 ML-DmBG1-C1	GSM379064 Vasa Mutant	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V018 Kc167 cell	S18 3rd inster #2	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM379065 Zuc Heterozygote	SRR001337 WT_females beta-eliminated	GSM379062 Squ Mutant	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM280088 S2cell (AGO1IP)	GSM467729 WT	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S35 KC+48 #2	S31 s2+48 #1	GSM180335 imaginal discs	S34 KC+48 #1	SRR029028 untreated (mock)	S14 0-1hr #1 (A)	V033 CMEW1 Cl.8+ cell	V009 CMEL1	V011 Sg4	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM379051 Armi Mutant	GSM379056 Krimp Heterozygote	SRR032095 AGO1 IP dcr2 knockdown	V026 1182-4H cell	SRR014275 Ovary_rep1 LK_P	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379066 Zuc Mutant	SRR001346 ago2 beta-eliminated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S16 KC -48 #1	S23 female body #2	GSM467730 r2d2	SRR029031 loqs-ORF knockdown	SRR029033 lacZ knockdown	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM424740 S2 pKF63 stably transfected	S17 3rd inster #1	V028 CMEW1 Cl.8+ cell	GSM379052 Aub Heterozygote	GSM379050 Armi Heterozygote	SRR014277 Ovary_rep1 NA_P	S20 2-4day pupae#2	GSM379060 SpnE Heterozygote	SRR029029 dcr-1 knockdown	SRR014280 Ovary_rep1 w1118_P	V021 ML-DmD21 cell	V010 MLDmD20c5	V020 S2R+ cell	V025 S2R+ cell	GSM379061 Squ Heterozygote	GSM239052 S2 cells, non beta-eliminated	SRR032094 ago2 knockdown	SRR029032 r2d2 knockdown	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR029030 dcr-2 knockdown	S30 s2-48 #2	GSM379059	GSM280085 WT testes (18-24nt)	S3 male body	GSM379054 Flam Heterozygote	S4 female body	GSM379067 SpnE Mutant	SRR014282 Ovary_rep1 wK_P	GSM180331 early embryo (2-6)	S15 S2 -48 #1	SRR032093 ago1 knockdown	GSM379058	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR014273 Ovary_rep1_Har_P	GSM467731 loq	GSM180334 larvae: 1st instar and 3rd instars	GSM280084 loqs-/- ovaries (18-29nt)	SRR001340 IR beta-eliminated	GSM379053 Aub Mutant	GSM246084 D. melanogaster adult male heads 454	S8 S2-48,+48, KC-48, +48 mix	GSM379055 Flam Mutant	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR010954 Aub trans-heterozygotes, oxidized	GSM180329 adult bodies (female bodies, male bodies)	GSM280087 S2cell (AGO2IP)	SRR001342 WT_males beta-eliminated	SRR010953 Aub heterozygotes, oxidized	GSM180330 very early embryo (0-1)	GSM280082 WT ovaries (18-29nt)	GSM239050 fly heads, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	GSM180337 tissue culture cells (S2 only)	SRR010955 Aub IP in Ago3 heterozygotes	SRR032092 mock oxidized	SRR010960 wt, oxidized	GSM424739 S2 parental	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR023197 RNA Library from S2 control cells	SRR010956 Piwi IP in Ago3 heterozygotes	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR023399 RNA bound by P19 protein	SRR010951 Ago3 heterozygotes, oxidized
......GATCCAAGCCATAATTCTTACGTAA.............................................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AAGCCATAATTCTTACGTAA.............................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGCCATAATTCTTACGTAA.............................................................................................	19	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GCCATAATTCTTACGTAA.............................................................................................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AACTCCTCAAAGGGTTGTGA...........................................................................	20	1	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CTCCTCAAAGGGTTGTGAAATG.......................................................................	22	1	3183	424	27	28	13	17	1097	18	42	30	122	61	144	9	11	67	5	50	0	4	3	3	4	12	0	14	0	3	13	134	38	13	2	76	5	78	3	1	4	8	7	0	3	4	113	1	0	0	72	11	192	0	7	0	2	0	0	98	2	0	2	2	18	0	1	0	0	2	1	2	4	0	5	0	5	0	2	1	0	1	0	0	0	0	0	0	0	2	0	0	7	0	15	0	0	0	0	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	0	2	1	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CTCCTCAAAGGGTTGTGAAAT........................................................................	21	1	136	5	6	4	5	3	17	16	6	2	2	7	1	0	1	5	0	3	0	0	0	0	7	1	0	2	0	0	0	5	4	0	1	5	0	0	2	1	0	0	1	0	1	1	1	0	0	0	0	0	2	0	0	0	1	0	0	2	0	0	0	0	5	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CTCCTCAAAGGGTTGTGAA..........................................................................	19	1	31	3	0	0	0	0	0	6	0	0	0	2	0	0	0	10	0	0	0	0	0	0	3	0	0	0	0	0	0	1	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CTCCTCAAAGGGTTGTGA...........................................................................	18	1	27	0	0	2	0	0	3	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CTCCTCAAAGGGTTGTGAAA.........................................................................	20	1	47	4	0	0	2	0	1	5	0	0	1	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	6	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CTCCTCAAAGGGTTGTGAAATGTCGAC..................................................................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................CACAGCCATTTTGATGAGTT..............................	20	1	43	1	1	9	0	4	1	4	0	1	1	1	2	0	2	0	0	0	0	1	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CACAGCCATTTTGATGAG................................	18	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CACAGCCATTTTGATGAGT...............................	19	1	10	0	0	1	0	2	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ACAGCCATTTTGATGAGTTT.............................	20	1	16	1	0	1	0	1	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ACAGCCATTTTGATGAGT...............................	18	1	147	4	4	20	0	13	0	13	3	9	3	0	0	8	2	0	1	0	9	0	3	3	0	0	6	0	10	0	2	0	2	0	0	0	1	0	0	0	2	0	0	9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	0	2	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ACAGCCATTTTGATGAGTT..............................	19	1	835	73	20	54	0	46	15	48	11	22	98	9	59	29	0	0	2	0	36	1	6	6	0	1	36	0	49	4	5	0	39	0	0	0	11	15	0	0	3	1	0	34	0	0	2	0	2	1	0	16	0	1	0	0	0	0	0	0	2	0	6	1	0	1	0	7	5	2	2	0	0	0	0	0	0	3	2	1	0	0	0	0	4	1	2	0	2	0	0	0	0	2	0	0	0	1	3	2	1	0	0	3	3	1	1	2	0	1	0	1	0	0	0	0	1	2	2	3	0	0	0	1	0	0	0	2	0	0	0	0	0	0	6	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CAGCCATTTTGATGAGTT..............................	18	1	48	7	1	2	0	4	4	5	2	4	3	0	3	0	0	0	0	0	0	0	1	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AGCCATTTTGATGAGTTT.............................	18	1	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TCGTGCGAATCGCGGCAGCG..........	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TCGTGCGAATCGCGGCAGCGGATCAA....	26	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TCGTGCGAATCGCGGCAGCGGATCA.....	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V082 embryo 14-24hr	SRR031696_2152	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S29 male head #1	SRR031699 Total small RNAs from dcr-2 homozygous flies	V081 embryo 2-6hr	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031692 Total small RNAs from Oregon R	V002 IR+	SRR031701 Total small RNAs from r2d2 heterozygous flies	V001 IR-	SRR001345 ago2 non-beta-eliminated	SRR001349 heterozygous dcr-2_untreated	S12 6-10h #1 (10)	SRR001347 ago2 untreated	S13 6-10h #2 (11)	V066 r2d2[1], ovary, AGO1IP	SRR001664 homozygous dcr-2_untreated	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	S22 female head #1	V083 male, one day	V063 CS,ovary,AGO1IP	S28 0-2d pupae	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR001343 dcr-2 non-beta-eliminated	SRR001338 IR non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V090 CS  male total RNA	S2 female head	S10 2-6h #1 (8)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S27 0-1d Pupae (w)	S1 male head	SRR001344 dcr-2 beta-eliminated	V084 female, one day	S7 12-24hr embryo	V064 ago2[414], ovary, AGO1IP	S21 disk #2	S5 imaginal disc	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S33 KC-48 #2	V088 r2d2[1] ovary total RNA	S24 male body #2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S26 1st instar #2	S19 2-4day pupae #1	S9 0-1h #3 (7)	SRR001348 ago2 oxidized	GSM180328 adult heads (female heads, male heads)	V098 dcr-2[L811fsX] ovary	SRR031693_4	S25 1st instar #1	S32 s2+48 #2	V076 ML-DmBG3-C2	V097 CS ovary	S11 2-6h #2 (9)	GSM239041 fly heads, non beta-eliminated	V008 S2-DRSC	V067 S2-NP	V089 ago2[414] ovary total RNA	V019 GM2 cell	GSM379063 Vasa Heterozygote	GSM180333 late embryo (12-24)	GSM180332 mid embryo (6-10)	GSM379057 Krimp Mutant	GSM343287 Drosophila Toll 10b mutant embryos	V024 kc167 cell	V075 ML-DmBG1-C1	GSM379064 Vasa Mutant	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V018 Kc167 cell	S18 3rd inster #2	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM379065 Zuc Heterozygote	SRR001337 WT_females beta-eliminated	GSM379062 Squ Mutant	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM280088 S2cell (AGO1IP)	GSM467729 WT	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S35 KC+48 #2	S31 s2+48 #1	GSM180335 imaginal discs	S34 KC+48 #1	SRR029028 untreated (mock)	S14 0-1hr #1 (A)	V033 CMEW1 Cl.8+ cell	V009 CMEL1	V011 Sg4	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM379051 Armi Mutant	GSM379056 Krimp Heterozygote	SRR032095 AGO1 IP dcr2 knockdown	V026 1182-4H cell	SRR014275 Ovary_rep1 LK_P	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379066 Zuc Mutant	SRR001346 ago2 beta-eliminated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S16 KC -48 #1	S23 female body #2	GSM467730 r2d2	SRR029031 loqs-ORF knockdown	SRR029033 lacZ knockdown	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM424740 S2 pKF63 stably transfected	S17 3rd inster #1	V028 CMEW1 Cl.8+ cell	GSM379052 Aub Heterozygote	GSM379050 Armi Heterozygote	SRR014277 Ovary_rep1 NA_P	S20 2-4day pupae#2	GSM379060 SpnE Heterozygote	SRR029029 dcr-1 knockdown	SRR014280 Ovary_rep1 w1118_P	V021 ML-DmD21 cell	V010 MLDmD20c5	V020 S2R+ cell	V025 S2R+ cell	GSM379061 Squ Heterozygote	GSM239052 S2 cells, non beta-eliminated	SRR032094 ago2 knockdown	SRR029032 r2d2 knockdown	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR029030 dcr-2 knockdown	S30 s2-48 #2	GSM379059	GSM280085 WT testes (18-24nt)	S3 male body	GSM379054 Flam Heterozygote	S4 female body	GSM379067 SpnE Mutant	SRR014282 Ovary_rep1 wK_P	GSM180331 early embryo (2-6)	S15 S2 -48 #1	SRR032093 ago1 knockdown	GSM379058	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR014273 Ovary_rep1_Har_P	GSM467731 loq	GSM180334 larvae: 1st instar and 3rd instars	GSM280084 loqs-/- ovaries (18-29nt)	SRR001340 IR beta-eliminated	GSM379053 Aub Mutant	GSM246084 D. melanogaster adult male heads 454	S8 S2-48,+48, KC-48, +48 mix	GSM379055 Flam Mutant	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR010954 Aub trans-heterozygotes, oxidized	GSM180329 adult bodies (female bodies, male bodies)	GSM280087 S2cell (AGO2IP)	SRR001342 WT_males beta-eliminated	SRR010953 Aub heterozygotes, oxidized	GSM180330 very early embryo (0-1)	GSM280082 WT ovaries (18-29nt)	GSM239050 fly heads, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	GSM180337 tissue culture cells (S2 only)	SRR010955 Aub IP in Ago3 heterozygotes	SRR032092 mock oxidized	SRR010960 wt, oxidized	GSM424739 S2 parental	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR023197 RNA Library from S2 control cells	SRR010956 Piwi IP in Ago3 heterozygotes	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR023399 RNA bound by P19 protein	SRR010951 Ago3 heterozygotes, oxidized
.................TAATTCTTACGTAACTCCTCA......................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACTCCTCAAAGGGTTGTGAAA.........................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACTCCTCAAAGGGTTGTGAAAT........................................................................	22	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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