Page generated on Fri Oct 15 12:01:13 2010

dme-mir-13b-1




dme-mir-13b-1

View dme-mir-13b-1 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-13b-111751690903212905167794161251677941290


TGACTGAACCACGTCTTTCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGTATTCACAATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAATCTCAACATTGAACGG
........................(((..(((((((((((.((((((...((((..........)))))))))).)))))))))))...))).........................-21.20
.(((........))).(((((.((((...(((((((((((.((((((...((((..........)))))))))).))))))))))).....))))))))).................-28.00
Sense strand
                                                                                                                     SizeBlastTotalV065 dcr-2[L811fsX], ovary, AGO1IPV098 dcr-2[L811fsX] ovaryV066 r2d2[1], ovary, AGO1IPV063 CS,ovary,AGO1IPV088 r2d2[1] ovary total RNA  V064 ago2[414], ovary, AGO1IPV097 CS ovaryV076 ML-DmBG3-C2V089 ago2[414] ovary total RNA  SRR032095 AGO1 IP dcr2 knockdown V081 embryo 2-6hrV082 embryo 14-24hrV067 S2-NPSRR031696_2152 SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 V024 kc167 cellV026 1182-4H cellV019 GM2 cellGSM379057 Krimp Mutant SRR014280 Ovary_rep1 w1118_P GSM280088 S2cell (AGO1IP) GSM379065 Zuc Heterozygote GSM379064 Vasa Mutant GSM424740 S2 pKF63 stably transfected S33 KC-48 #2SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 S32 s2+48 #2GSM379063 Vasa Heterozygote SRR014275 Ovary_rep1 LK_P V033 CMEW1 Cl.8+ cellSRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb V011 Sg4SRR029028 untreated (mock) V021 ML-DmD21 cellSRR001345 ago2 non-beta-eliminated V018 Kc167 cellV008 S2-DRSCSRR031703 Total small RNAs from r2d2 homozygous flies SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 V009 CMEL1SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb SRR014277 Ovary_rep1 NA_P GSM379056 Krimp Heterozygote SRR029633 total small RNAs from hen1 homozygous flies SRR014282 Ovary_rep1 wK_P GSM379066 Zuc Mutant GSM379060 SpnE Heterozygote V025 S2R+ cellV090 CS  male total RNA  SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb GSM379052 Aub Heterozygote SRR031701 Total small RNAs from r2d2 heterozygous flies SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb V028 CMEW1 Cl.8+ cellS31 s2+48 #1GSM379062 Squ Mutant SRR014273 Ovary_rep1_Har_P SRR031692 Total small RNAs from Oregon R SRR031697 Total small RNAs from dcr-2 heterozygous flies GSM379051 Armi Mutant SRR029030 dcr-2 knockdown GSM379061 Squ Heterozygote SRR031699 Total small RNAs from dcr-2 homozygous flies V083 male, one dayS29 male head #1V002 IR+SRR032094 ago2 knockdown GSM379058 SRR001349 heterozygous dcr-2_untreated V020 S2R+ cellOSS6 Drosophila OSS cell small RNA libraries, rep2 V084 female, one daySRR029031 loqs-ORF knockdown V001 IR-S30 s2-48 #2GSM379067 SpnE Mutant OSS2 Drosophila OSS cell small RNA libraries, rep1 GSM379054 Flam Heterozygote V010 MLDmD20c5SRR029032 r2d2 knockdown GSM379050 Armi Heterozygote OSS7 Drosophila OSS cell small RNA libraries, rep3 OSS8 Drosophila OSS cell small RNA libraries, rep4 V075 ML-DmBG1-C1SRR032093 ago1 knockdown SRR001338 IR non-beta-eliminated GSM379053 Aub Mutant S35 KC+48 #2S15 S2 -48 #1GSM280084 loqs-/- ovaries (18-29nt) SRR001664 homozygous dcr-2_untreated S16 KC -48 #1GSM280083 dcr-2-/- ovaries (18-29nt) SRR029033 lacZ knockdown GSM343287 Drosophila Toll 10b mutant embryos SRR001347 ago2 untreated S34 KC+48 #1SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR029029 dcr-1 knockdown GSM379059 SRR001344 dcr-2 beta-eliminated S24 male body #2S12 6-10h #1 (10)S28 0-2d pupaeS9 0-1h #3 (7)S10 2-6h #1 (8)S13 6-10h #2 (11)S27 0-1d Pupae (w)GSM280082 WT ovaries (18-29nt) S14 0-1hr #1 (A)GSM280085 WT testes (18-24nt) GSM379055 Flam Mutant S22 female head #1S23 female body #2S2 female headS8 S2-48,+48, KC-48, +48 mixS19 2-4day pupae #1SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated SRR001343 dcr-2 non-beta-eliminated GSM424739 S2 parental SRR010954 Aub trans-heterozygotes, oxidized S21 disk #2S5 imaginal discSRR031704 2-O-methylated small RNAs from r2d2 homozygous flies S7 12-24hr embryoS11 2-6h #2 (9)S1 male headSRR010953 Aub heterozygotes, oxidized SRR001348 ago2 oxidized SRR010959 Ago3 IP in heterozygotes S4 female bodyGSM239052 S2 cells, non beta-eliminated S18 3rd inster #2GSM239041 fly heads, non beta-eliminated SRR032092 mock oxidized SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies GSM467729 WT SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies GSM424741 S2 pKF63 transiently transfected S17 3rd inster #1GSM180337 tissue culture cells (S2 only) SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR001346 ago2 beta-eliminated GSM467730 r2d2 GSM180328 adult heads (female heads, male heads) S3 male bodySRR032096 AGO2 IP dcr2 knockdownS20 2-4day pupae#2SRR001337 WT_females beta-eliminated GSM280087 S2cell (AGO2IP) S25 1st instar #1GSM180333 late embryo (12-24) SRR010956 Piwi IP in Ago3 heterozygotes SRR031693_4 GSM180332 mid embryo (6-10) GSM180335 imaginal discs SRR010955 Aub IP in Ago3 heterozygotes GSM180330 very early embryo (0-1) GSM180331 early embryo (2-6) S26 1st instar #2GSM467731 loq GSM180329 adult bodies (female bodies, male bodies) SRR010958 Piwi IP in Ago3 trans-heterozygotes GSM180334 larvae: 1st instar and 3rd instars GSM246084 D. melanogaster adult male heads 454 GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day SRR001340 IR beta-eliminated SRR010960 wt, oxidized SRR023400 total RNA extracted from P19 cells SRR023399 RNA bound by P19 protein SRR023197 RNA Library from S2 control cells GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries SRR001342 WT_males beta-eliminated SRR010951 Ago3 heterozygotes, oxidized SRR010952 Ago3 trans-heterozygotes, oxidized GSM239050 fly heads, beta-eliminated GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023407 RNA bound by NLS-P19 protein GSM280086 WT ovaries (AGO2IP) GSM239051 S2 cells, beta-eliminated SRR023402 total RNA extracted from NLS-P19 cells GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries
...........................TGTCGTTAAAATGTTTGTGAA.....................................................................2111000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGTCGTTAAAATGTTTGTGA......................................................................2011000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCGTTAAAATGTTTGTGAACTT..................................................................22115500000000005204000000000000010020000300140000001900000004000001817000180100090000000000000000200007000260000203000100000101010030000100003000000101000100000000000200000000000000000000000000000000
.............................TCGTTAAAATGTTTGTGAAC....................................................................20119000000000010000000000000000000000000000000000200000001000001000011000000100000000000020000000000600000000000000000000000000000000002000000000000000000000000100000000000000000000000000000000
.............................TCGTTAAAATGTTTGTGAACTTATGT..............................................................2611000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCGTTAAAATGTTTGTGA......................................................................18112000000000000000000000000000000000000003000000100000002000001100000000010000000000000000000000000000000000000000000000000000000100001000000001000000000000000000000000000000000000000000000000
.............................TCGTTAAAATGTTTGTGAACT...................................................................21111700000000000003000000000000000010000000120000002000005001001000616000151600030000100000000000200008000100000000000000000100000000000300000000000001000100000000000000000000000000000000000000000000
.............................TCGTTAAAATGTTTGTGAACTTA.................................................................23118000000000030000000000000000000000000003000000200000001000001000000000010000000000000010000001000030000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000
.............................TCGTTAAAATGTTTGTGAA.....................................................................1918000000000001000000000000040000000000000000000000000000000000000000000000000000100000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCGTTAAAATGTTTGTGAACTTAT................................................................24157000000000022040000000000000000000001005000000300000006000005200030700020010000000000000000001000210000000001000000100000000001006000000000001000000000000000000000000000000000000000000000000
.............................TCGTTAAAATGTTTGTGAACTTATG...............................................................251870000000020032474030010000000000000032000400370002700160000120240000083000026371800600303200000000010200002000060100104132381510200101010030000174211010000002030007000000000001010002000000000000000000000000000
..............................CGTTAAAATGTTTGTGAACTTATG...............................................................24111000000000062000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000
..............................CGTTAAAATGTTTGTGAACTTATGT..............................................................2511000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGTTAAAATGTTTGTGAACT...................................................................2012000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGTTAAAATGTTTGTGAACTT..................................................................2112000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000
...............................GTTAAAATGTTTGTGAACTT..................................................................2011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GTTAAAATGTTTGTGAACTTATG...............................................................23111000000000072000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GTTAAAATGTTTGTGAACT...................................................................1911000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTAAAATGTTTGTGAACTTATG...............................................................2211000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AATGTTTGTGAACTTATG...............................................................1811000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................ATGTATTCACAATCATATCACAGCC.........................................2511000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................ATGTATTCACAATCATATCACAG...........................................2311000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................ATGTATTCACAATCATATCACAGC..........................................2411000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TATTCACAATCATATCACAGCC.........................................2211000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TATTCACAATCATATCACAGCCATTTTGACGAG..............................3311000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................TCATATCACAGCCATTTTGACGAGTT............................2621000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TCATATCACAGCCATTTTGACGAGT.............................2521000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................CATATCACAGCCATTTTGACGAG..............................2321000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................CATATCACAGCCATTTTGACGAGTTT...........................2621000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
................................................................CATATCACAGCCATTTTGACGAGT.............................24212000000000000000000100000000000000000000000000000100000000000000000000020000000000000000000003000020000100000000010000000000000000001000000000000000000000000000000000000000000000000000000000
................................................................CATATCACAGCCATTTTGACGAGTT............................25212000000000000000000200000000000000000000000000100000000000000000000000040000000000000000000002000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................ATATCACAGCCATTTTGACG................................20217100000000000000001000000000001000000110000000000000000000000000020000000000000000000000000100100000000000000000000000001100200000040000000000000000000000000000000000000000000000000000000000
.................................................................ATATCACAGCCATTTTGACGAG..............................222262112211222003610041131102138101510102846077416212060100010103110011401003113010001103102020000011211000005100010304210200201100000003000100000000000000000000000000000000000000000000000000000000000
.................................................................ATATCACAGCCATTTTGA..................................1835000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000000000000000000
.................................................................ATATCACAGCCATTTTGACGAGTTT...........................2523000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................ATATCACAGCCATTTTGACGAGT.............................23229010005231017151302112002100190240240302731501210050010000101140026000912120002010110110001010020130150000510017061011610100233302200010010100010000010000000000100010000001000003000000000000000000000
.................................................................ATATCACAGCCATTTTGACGAGTT............................24237440350330003210062040301204364602403202210000010304120200202820320032022020130012701115123121169006000020000471249650540040320000033001000110110000001001200000100000200000111000000000000000000000
.................................................................ATATCACAGCCATTTTGAC.................................1921000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.................................................................ATATCACAGCCATTTTGACGA...............................21248000000010001030110000000000310001001124002000300000002000001000010500000000010001000000002100000000000010000000000201001100000000000001000010000000000000100000000000000000000000000000000000
..................................................................TATCACAGCCATTTTGACGAGTTT...........................242914495151782242693837377559863133253518134598112553919431288955111113281515125168271326276235961392105649065410365175546361081431385669140670943848411466606893664243963453037159276782335164412442833025202952761805073432565264312266913821047430441413461322841443141371696011682592652481911166976163117129831242798123525520784827431285459162146324507861203433282830001510250143015915255133691511001101461241877691102240100280010320210010000100000000
..................................................................TATCACAGCCATTTTGACGAG..............................2127709712351021100512561204809692162332680441121733724582714035976081393553365363426709461217362741408271393284499854324700626118521908153201194509516369367871196245257475199499423655437157103420127752812192624425112777426221387962614396655473717811361714856927076762821245644515296221121351031129224836110024351272685517773852101625781191514942242509948492134110124027351216271919168564593671097112430613392455592389394556665281361184796423115231428271728107917252627164210612303015101000000000
..................................................................TATCACAGCCATTTTGAC.................................18239741135300217151170022300000062622501003021003020500303100002109100032000231174001118000119700000202360020000120002001070022040000209100320101133192182000027012600051001000030067000002000000034100000900000000000
..................................................................TATCACAGCCATTTTGACG................................192198114761113835714821447191813677214702913116251961453757110129246334639353141223612703225428221171639142141384191012732129901351645257141081621140082011230165925000033011123052316123601063180401120010002005000002002010012100000000000000000
..................................................................TATCACAGCCATTTTGACGAGTTTG..........................2522692313142911275372111132020210130301151710302112125210403104311101000301000002104000003000101100100110100200000000000100000000000000100000004000000140000009000000000000000070000000000000000000000000
..................................................................TATCACAGCCATTTTGACGA...............................202102641539711210890305213813208201630654152763548245564282865100159852818833374414278139519838253927354111051025203111373201043101218917110503170283955141803091326931675534437756454115382732141231510162442946114376634613312515522113338212461411111301101355371366212731002721147105119158224151400230101054100000481100021800000000000
..................................................................TATCACAGCCATTTTGACGAGTT............................2323347035233369235837229413207759213469195097148443588056944519499442873721145767331604808348208413243976034758414253846528371403213893810804360803795333685343302969132211164042680829582198736286191771988917643243922265420723155002192624305148152316323287229621912515814144861683012932133311999117841171961449010052904815061136731599682841326841089344111691173782058998115111262056719148122341188610998104329345893489948766890796676765551970027137837835064617664468325514397377852901706425050731186322841074654364938052479337439202821353933351281276910732563252880480410732727118812221107671771227235687766461653422857332350627331042052137898400177298103299117150187163295109172142203162128511141131431083710741344362835515815131010622000
..................................................................TATCACAGCCATTTTGACGAGT.............................222155851373147621775625171424611876246340307283631974559579268713458923442311521535912919187301843622534127471558522562134571301437972137519989126431015211894907024060131758547186033072717584145441824511488125041283717683979982121557883937427690592791295312249979713142125226393687750797297107681067956856007369110032614012022889852875376870472024035407297167453377439893921507152144433517132513098263140105530430439112519681748302606187930681044478929625737348127215687336629722231245824803554196710761871145414012131115624978628951742174214251733461080107283510027621001284741903463603805662343305719940424114618751122353191383185344322204206517310912158841051444668234596326571561002113134233041100
..................................................................TATCACAGCCATTTTGACGAGTTTGGGT.......................2811000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................ATCACAGCCATTTTGACGAGTT............................2226767390387351683247465337647224758721264737810329617849108605493975610861284413618734127139334234282320343651276038231118213725731914182317726123281518152411466171152726561315381244531320101024263214105804153585861811956771071666622615022800200040100090023008200010220210021010301000000000000000000000
...................................................................ATCACAGCCATTTTGACGAG..............................20213120171001030015020022010006010000014005300310001110000000030006001400112000200000500401320003000000800000001040000100100000000010000100000000001000001000000000000000010000000000000000000000000
...................................................................ATCACAGCCATTTTGACGAGTTT...........................232200918410412920124014200211001511000411000700113000221100242001100110010200002002903000510003700002000200000001000000000000000000000000000000000000010000002000000000000000000000000000000000000000000
...................................................................ATCACAGCCATTTTGACGAGT.............................21222197361521673791402717110188734159262533213156741543492969110114117726428610148751312714131314675520428182361121541512411121363191015441941018345172415013221030525162185425329224033143020410100008200110000002000001000001000010010000000000000000000000
...................................................................ATCACAGCCATTTTGACGA...............................19216000201000400100000000000000100000000000000000000000000000000000010000000200000000000100000000000000000000000000000000000000000200000000000010000000000000000000000000000000000000000000000000
...................................................................ATCACAGCCATTTTGACG................................1824000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
...................................................................ATCACAGCCATTTTGACGAGTTTG..........................2422000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000
....................................................................TCACAGCCATTTTGACGAGTTTG..........................2321000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TCACAGCCATTTTGACGAG..............................19212710021002010003000010000001607000000030000000001000000000060001000002100000100070000700000005300000003000040261100000535100000010000100000100001010000000000000000000200000000000000000000000000
....................................................................TCACAGCCATTTTGACGA...............................182170000000002000100001000000000000000010000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................................................................TCACAGCCATTTTGACGAGT.............................202105826826771824480192771501991301722072061004481213537820912129012530100032002411108170400332115170222131110030261402172101216350119252141217606708591293310094058200020000000010000001000300000000100001000000000000000000000
....................................................................TCACAGCCATTTTGACGAGTT............................21221669742104302539219169931715150212121410153901855170641202224761015321203615074850101168741472262601692312601775111116022042032570141528002907201510171017181521612013274212111100260513100041200001030000030300220100000100000100000000000000000000
....................................................................TCACAGCCATTTTGACGAGTTT...........................22242202408110100100001100100010400000200000000010000000000000000000000000001001010000000000000100003000000001000000010000010000001000000000000000000000000000000000000000000000000000000000000000
.....................................................................CACAGCCATTTTGACGAGTTT...........................21232300502000100000100100000000000000600100000000000000000000000000000000000110000100600100000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CACAGCCATTTTGACGAGTTTG..........................2226020000000100000000000000000000001000100000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CACAGCCATTTTGACGAGT.............................1925031114201697132402438270730111011000013140809104020092119110115010110335110525490016433004010016160103000070003170000100001001001001100100002000010000100010000000000100000000100000000000000000000000000
.....................................................................CACAGCCATTTTGACGAG..............................18222101010100101000000000000000000000010000000000000000000000000200020000000101010000000001002000000000000020000000000000100000000000000000000000000100000000000000000100000000000000000000000000
.....................................................................CACAGCCATTTTGACGAGTT............................202141573296555431691310517717911929471017242709226012801132172240102103226310740037011161282420530142242452191011112220111002000733010050000000004022010350000010000000020000100001000000000100000000000000000000000000000000000
......................................................................ACAGCCATTTTGACGAGTTTG..........................21222311208011020000000000000000000000000010000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ACAGCCATTTTGACGAGT.............................1821810287676661785559694015823462941882631183013332081982561533163861491750029382182661144061089622593218511338341942944672568136516521822911293172304526610201411891782651462915526590117211536101187710710021098214253601421777311911877001178070220701664188184000000043046300000505050001020000000000208030000131001078000200000000200010110000000000100000
......................................................................ACAGCCATTTTGACGAGTTT...........................202112954943501882154313482529261412139176181100230152982035247612314131191452911134332367112078101421051210221131302520215113417801820002055000360800000003000001001150000100000000000001000010000000000000000000000000000000000000000000
......................................................................ACAGCCATTTTGACGAGTT............................192409333319394309835233083322173379961781602376072787761235375345350625674785450613019156810904432365157319187285181138416051644754046632694294486405912003041438335226238542037823028433698582295170165923472111240129115144028523220956141246362232754215960264181440394130553211751307000125111113101004393972001000000130000213111020056000041002300100100300030514000000011100000
.......................................................................CAGCCATTTTGACGAGTT............................182114944576114729743218523131811638771105321206426630147219003108216539122105319500572152101446502330311575031600841011212010400027500051400101001012010000010020000000000000000010000000001000300000000000000000000000000000000000
.......................................................................CAGCCATTTTGACGAGTTT...........................19244201618000400000200000100001002000000000000000000000000000100003010000000003001000000000000000006000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AGCCATTTTGACGAGTTT...........................182740625032101200110501100100001013000000010001341100010300000010100020000000104101100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AGCCATTTTGACGAGTTTG..........................1922000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TGGGTAAAGAAATCTCAACATTGAACG.2711000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                     SizeBlastTotalV065 dcr-2[L811fsX], ovary, AGO1IPV098 dcr-2[L811fsX] ovaryV066 r2d2[1], ovary, AGO1IPV063 CS,ovary,AGO1IPV088 r2d2[1] ovary total RNA  V064 ago2[414], ovary, AGO1IPV097 CS ovaryV076 ML-DmBG3-C2V089 ago2[414] ovary total RNA  SRR032095 AGO1 IP dcr2 knockdown V081 embryo 2-6hrV082 embryo 14-24hrV067 S2-NPSRR031696_2152 SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 V024 kc167 cellV026 1182-4H cellV019 GM2 cellGSM379057 Krimp Mutant SRR014280 Ovary_rep1 w1118_P GSM280088 S2cell (AGO1IP) GSM379065 Zuc Heterozygote GSM379064 Vasa Mutant GSM424740 S2 pKF63 stably transfected S33 KC-48 #2SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 S32 s2+48 #2GSM379063 Vasa Heterozygote SRR014275 Ovary_rep1 LK_P V033 CMEW1 Cl.8+ cellSRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb V011 Sg4SRR029028 untreated (mock) V021 ML-DmD21 cellSRR001345 ago2 non-beta-eliminated V018 Kc167 cellV008 S2-DRSCSRR031703 Total small RNAs from r2d2 homozygous flies SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 V009 CMEL1SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb SRR014277 Ovary_rep1 NA_P GSM379056 Krimp Heterozygote SRR029633 total small RNAs from hen1 homozygous flies SRR014282 Ovary_rep1 wK_P GSM379066 Zuc Mutant GSM379060 SpnE Heterozygote V025 S2R+ cellV090 CS  male total RNA  SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb GSM379052 Aub Heterozygote SRR031701 Total small RNAs from r2d2 heterozygous flies SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb V028 CMEW1 Cl.8+ cellS31 s2+48 #1GSM379062 Squ Mutant SRR014273 Ovary_rep1_Har_P SRR031692 Total small RNAs from Oregon R SRR031697 Total small RNAs from dcr-2 heterozygous flies GSM379051 Armi Mutant SRR029030 dcr-2 knockdown GSM379061 Squ Heterozygote SRR031699 Total small RNAs from dcr-2 homozygous flies V083 male, one dayS29 male head #1V002 IR+SRR032094 ago2 knockdown GSM379058 SRR001349 heterozygous dcr-2_untreated V020 S2R+ cellOSS6 Drosophila OSS cell small RNA libraries, rep2 V084 female, one daySRR029031 loqs-ORF knockdown V001 IR-S30 s2-48 #2GSM379067 SpnE Mutant OSS2 Drosophila OSS cell small RNA libraries, rep1 GSM379054 Flam Heterozygote V010 MLDmD20c5SRR029032 r2d2 knockdown GSM379050 Armi Heterozygote OSS7 Drosophila OSS cell small RNA libraries, rep3 OSS8 Drosophila OSS cell small RNA libraries, rep4 V075 ML-DmBG1-C1SRR032093 ago1 knockdown SRR001338 IR non-beta-eliminated GSM379053 Aub Mutant S35 KC+48 #2S15 S2 -48 #1GSM280084 loqs-/- ovaries (18-29nt) SRR001664 homozygous dcr-2_untreated S16 KC -48 #1GSM280083 dcr-2-/- ovaries (18-29nt) SRR029033 lacZ knockdown GSM343287 Drosophila Toll 10b mutant embryos SRR001347 ago2 untreated S34 KC+48 #1SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR029029 dcr-1 knockdown GSM379059 SRR001344 dcr-2 beta-eliminated S24 male body #2S12 6-10h #1 (10)S28 0-2d pupaeS9 0-1h #3 (7)S10 2-6h #1 (8)S13 6-10h #2 (11)S27 0-1d Pupae (w)GSM280082 WT ovaries (18-29nt) S14 0-1hr #1 (A)GSM280085 WT testes (18-24nt) GSM379055 Flam Mutant S22 female head #1S23 female body #2S2 female headS8 S2-48,+48, KC-48, +48 mixS19 2-4day pupae #1SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated SRR001343 dcr-2 non-beta-eliminated GSM424739 S2 parental SRR010954 Aub trans-heterozygotes, oxidized S21 disk #2S5 imaginal discSRR031704 2-O-methylated small RNAs from r2d2 homozygous flies S7 12-24hr embryoS11 2-6h #2 (9)S1 male headSRR010953 Aub heterozygotes, oxidized SRR001348 ago2 oxidized SRR010959 Ago3 IP in heterozygotes S4 female bodyGSM239052 S2 cells, non beta-eliminated S18 3rd inster #2GSM239041 fly heads, non beta-eliminated SRR032092 mock oxidized SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies GSM467729 WT SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies GSM424741 S2 pKF63 transiently transfected S17 3rd inster #1GSM180337 tissue culture cells (S2 only) SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR001346 ago2 beta-eliminated GSM467730 r2d2 GSM180328 adult heads (female heads, male heads) S3 male bodySRR032096 AGO2 IP dcr2 knockdownS20 2-4day pupae#2SRR001337 WT_females beta-eliminated GSM280087 S2cell (AGO2IP) S25 1st instar #1GSM180333 late embryo (12-24) SRR010956 Piwi IP in Ago3 heterozygotes SRR031693_4 GSM180332 mid embryo (6-10) GSM180335 imaginal discs SRR010955 Aub IP in Ago3 heterozygotes GSM180330 very early embryo (0-1) GSM180331 early embryo (2-6) S26 1st instar #2GSM467731 loq GSM180329 adult bodies (female bodies, male bodies) SRR010958 Piwi IP in Ago3 trans-heterozygotes GSM180334 larvae: 1st instar and 3rd instars GSM246084 D. melanogaster adult male heads 454 GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day SRR001340 IR beta-eliminated SRR010960 wt, oxidized SRR023400 total RNA extracted from P19 cells SRR023399 RNA bound by P19 protein SRR023197 RNA Library from S2 control cells GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries SRR001342 WT_males beta-eliminated SRR010951 Ago3 heterozygotes, oxidized SRR010952 Ago3 trans-heterozygotes, oxidized GSM239050 fly heads, beta-eliminated GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023407 RNA bound by NLS-P19 protein GSM280086 WT ovaries (AGO2IP) GSM239051 S2 cells, beta-eliminated SRR023402 total RNA extracted from NLS-P19 cells GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries
.........CACGTCTTTCTTATACCA..........................................................................................1811000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCTTTCTTATACCATGTC......................................................................................1811000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ACAGCCATTTTGACGAGTTT...........................2021000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000