Page generated on Fri Oct 15 12:01:36 2010

dme-mir-190




dme-mir-190

View dme-mir-190 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-190149139864461286162111844121712861611184


TTTATCCTTAACTTGCCCTTCAAAACGAACTAATTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAAACACTCAGCTCA
...................................((.(((..((((((((((((((((((..((((((.((...(........)..)).)))))))))))))))))).))))))..))).))..........................-34.10
..............((..(((.....)))......((.(((..((((((((((((((((((..((((((.((...(........)..)).)))))))))))))))))).))))))..))).)).....................))...-34.40
Sense strand
                                                                                                                                                     SizeBlastTotalSRR031696_2152 SRR031703 Total small RNAs from r2d2 homozygous flies SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR029633 total small RNAs from hen1 homozygous flies SRR031699 Total small RNAs from dcr-2 homozygous flies SRR031701 Total small RNAs from r2d2 heterozygous flies SRR031692 Total small RNAs from Oregon R S29 male head #1OSS8 Drosophila OSS cell small RNA libraries, rep4 OSS6 Drosophila OSS cell small RNA libraries, rep2 OSS2 Drosophila OSS cell small RNA libraries, rep1 SRR001338 IR non-beta-eliminated SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies OSS7 Drosophila OSS cell small RNA libraries, rep3 V076 ML-DmBG3-C2S22 female head #1SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies S30 s2-48 #2S33 KC-48 #2V009 CMEL1S32 s2+48 #2S28 0-2d pupaeSRR001345 ago2 non-beta-eliminated S12 6-10h #1 (10)SRR031693_4 S13 6-10h #2 (11)SRR001347 ago2 untreated SRR001664 homozygous dcr-2_untreated V033 CMEW1 Cl.8+ cellSRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies SRR001343 dcr-2 non-beta-eliminated V082 embryo 14-24hrS31 s2+48 #1S10 2-6h #1 (8)S24 male body #2V098 dcr-2[L811fsX] ovaryV019 GM2 cellS9 0-1h #3 (7)SRR001349 heterozygous dcr-2_untreated SRR010955 Aub IP in Ago3 heterozygotes SRR010959 Ago3 IP in heterozygotes V028 CMEW1 Cl.8+ cellSRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated V021 ML-DmD21 cellS16 KC -48 #1S21 disk #2S1 male headSRR029030 dcr-2 knockdown S2 female headV010 MLDmD20c5V097 CS ovaryGSM467729 WT SRR001344 dcr-2 beta-eliminated GSM467730 r2d2 S35 KC+48 #2SRR010956 Piwi IP in Ago3 heterozygotes V081 embryo 2-6hrSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 S27 0-1d Pupae (w)GSM180328 adult heads (female heads, male heads) V008 S2-DRSCV065 dcr-2[L811fsX], ovary, AGO1IPS19 2-4day pupae #1V001 IR-V020 S2R+ cellV075 ML-DmBG1-C1SRR010953 Aub heterozygotes, oxidized S15 S2 -48 #1V063 CS,ovary,AGO1IPSRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 S5 imaginal discSRR010954 Aub trans-heterozygotes, oxidized V088 r2d2[1] ovary total RNA  S7 12-24hr embryoS23 female body #2V018 Kc167 cellSRR010958 Piwi IP in Ago3 trans-heterozygotes V026 1182-4H cellV011 Sg4S34 KC+48 #1SRR014280 Ovary_rep1 w1118_P S14 0-1hr #1 (A)GSM379063 Vasa Heterozygote V002 IR+S25 1st instar #1GSM424739 S2 parental GSM180333 late embryo (12-24) SRR014275 Ovary_rep1 LK_P V066 r2d2[1], ovary, AGO1IPSRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 V090 CS  male total RNA  V067 S2-NPV083 male, one daySRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM379066 Zuc Mutant GSM379060 SpnE Heterozygote GSM379065 Zuc Heterozygote V084 female, one daySRR014282 Ovary_rep1 wK_P SRR014277 Ovary_rep1 NA_P V089 ago2[414] ovary total RNA  S26 1st instar #2GSM379064 Vasa Mutant V024 kc167 cellGSM467731 loq SRR010960 wt, oxidized GSM379052 Aub Heterozygote GSM379062 Squ Mutant SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S8 S2-48,+48, KC-48, +48 mixGSM379061 Squ Heterozygote GSM379057 Krimp Mutant S3 male bodySRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 V064 ago2[414], ovary, AGO1IPGSM379067 SpnE Mutant GSM180332 mid embryo (6-10) SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM379058 GSM379051 Armi Mutant GSM180335 imaginal discs SRR032095 AGO1 IP dcr2 knockdown S11 2-6h #2 (9)SRR001348 ago2 oxidized S17 3rd inster #1SRR029032 r2d2 knockdown SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V025 S2R+ cellS4 female bodyGSM379050 Armi Heterozygote GSM379056 Krimp Heterozygote GSM379054 Flam Heterozygote S18 3rd inster #2GSM280088 S2cell (AGO1IP) GSM180337 tissue culture cells (S2 only) SRR032093 ago1 knockdown SRR032094 ago2 knockdown SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb GSM379053 Aub Mutant S20 2-4day pupae#2GSM379059 GSM180329 adult bodies (female bodies, male bodies) SRR010951 Ago3 heterozygotes, oxidized GSM424740 S2 pKF63 stably transfected SRR029029 dcr-1 knockdown SRR029028 untreated (mock) SRR001337 WT_females beta-eliminated SRR014273 Ovary_rep1_Har_P GSM180331 early embryo (2-6) GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day SRR029033 lacZ knockdown GSM343287 Drosophila Toll 10b mutant embryos GSM280083 dcr-2-/- ovaries (18-29nt) SRR001340 IR beta-eliminated GSM379055 Flam Mutant SRR010952 Ago3 trans-heterozygotes, oxidized GSM180334 larvae: 1st instar and 3rd instars GSM280082 WT ovaries (18-29nt) SRR001346 ago2 beta-eliminated SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb GSM180330 very early embryo (0-1) GSM280085 WT testes (18-24nt) SRR023400 total RNA extracted from P19 cells GSM280084 loqs-/- ovaries (18-29nt) SRR001342 WT_males beta-eliminated GSM246084 D. melanogaster adult male heads 454 GSM239052 S2 cells, non beta-eliminated GSM280087 S2cell (AGO2IP) SRR029031 loqs-ORF knockdown SRR032092 mock oxidized SRR032096 AGO2 IP dcr2 knockdownSRR023399 RNA bound by P19 protein GSM239041 fly heads, non beta-eliminated SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023197 RNA Library from S2 control cells SRR023407 RNA bound by NLS-P19 protein GSM239051 S2 cells, beta-eliminated GSM280086 WT ovaries (AGO2IP) GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR023402 total RNA extracted from NLS-P19 cells GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM239050 fly heads, beta-eliminated GSM424741 S2 pKF63 transiently transfected GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
........................ACGAACTAATTGATGGTTCCAGTG.....................................................................................................2414000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000
.........................CGAACTAATTGATGGTTCCAGTG.....................................................................................................2316000010030000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CTAATTGATGGTTCCAGTG.....................................................................................................19136000000030000000000030500009000001000000000000221000000000001100001000101000000000000000000010000000000010000010100000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................GAGATATGTTTGATATTCTTGGTTG.............................................................................2512001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GAGATATGTTTGATATTCTTGGTT..............................................................................24120322400100110000001000000000001000000000002000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...............................................GAGATATGTTTGATATTCTTGG................................................................................22123311312200110140002000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GAGATATGTTTGATATTCTTG.................................................................................2119000221200010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GAGATATGTTTGATATTCTTGGT...............................................................................23132300015000250202004000200020000000000000000000000000001000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................AGATATGTTTGATATTCTTGGTTG.............................................................................2413480160711283235514932026786110722961229113210667242148281423063232977472259631544299694246591302910313069175218264221881702131027624014666639195185851512322805960471511716452124116810905010711268958100228105936174834852279732979077526401351627243321201926184816313419140362419324913428322129033319111112215522151171171131271400109381815611211213730706022300003122200000000000
................................................AGATATGTTTGATATTCTTGG................................................................................2113722364158068304040622335427028477527642696365624225371982441317117128327110316169128010628236101569356586243301641640638580491176123971679131523141721008910512794921040008061194032017011313285305201646120100100100110600129030332020000513472200090120509192170201020100000000010000000000
................................................AGATATGTTTGATATTCTTGGTTGTTTCA........................................................................2911000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGATATGTTTGATATTCT...................................................................................18114971401751052559231210531068462560260000110402635022010000001810033000201000101000000000004700004000000000000000000000000000000000020000000000000000010000000000000000000000000000000000000000000000000000000000000000
................................................AGATATGTTTGATATTCTTGGTTGTTTCATT......................................................................3111000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGATATGTTTGATATTCTTGGTTGTT...........................................................................26154851121611010150201100000000010302002000000100000000001010000010000000000001000001000000000010000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGATATGTTTGATATTCTTGGTTGTTTCATTCAA...................................................................3411000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGATATGTTTGATATTCTT..................................................................................191467317354636312412084707232087117248253081160001530409070011114003000550001414002140700111000010004000140002110110000000000000001010000100000000000001200000000006100000001000000000000020000000000000000000000000000000000000000
................................................AGATATGTTTGATATTCTTG.................................................................................2012648053863423477623824073200515259121823143673616115368122100448291322226160062271700502110108024240097702200141380028727111450010000315060100031002120220080160000130211001331000001000000000041000200010000002001000100001306001020011000000000100000000000000
................................................AGATATGTTTGATATTCTTGGTTGTTTCATTCA....................................................................3311000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGATATGTTTGATATTCTTGGTTGTTT..........................................................................2715000100000000030000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGATATGTTTGATATTCTTGGTTGTTTCATTC.....................................................................3211000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGATATGTTTGATATTCTTGGT...............................................................................221784815577358076525994923822071751361536124970100151418819274346365151495252533634184191814541819111501616131255501969225761651193043155015138681152015000222470223341932010635332084210164102332301041208111330000002011100221207102150213100101100000000000000000000
................................................AGATATGTTTGATATTCTTGGTTGT............................................................................251251827964145931464063208454844551530591156937121561492601633632126017303817161006114381717026233112116345195174218655026867012510190310183840303536102713533037121502892314010302013040105116104050020221000001030200010200200101000000000000000000000
................................................AGATATGTTTGATATTCTTGGTTGTTTC.........................................................................2811000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGATATGTTTGATATTCTTGGTT..............................................................................231115053000962145897812714556054211181321246462681032536884271278781361576145132124938112754191540272732351212115222201402012298111182387041113401231513387831401851355100430362311053805327121610112104230214012308042120030013242000241003001001130200100000000000000000000000
.................................................GATATGTTTGATATTCTTGGTTG.............................................................................2314471121826163510181631311183139336161058173306031112101100000053102101000000300000000500100312000000001010000000000000000000000200001000001010101000000000000000000000006000000000000000001000000000000000000
.................................................GATATGTTTGATATTCTTG.................................................................................19132276464027362019910040200100000010001450110000006500000000302000000000000000000000000100000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000
.................................................GATATGTTTGATATTCTT..................................................................................18142034933650002000011000000000100000000000200000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.................................................GATATGTTTGATATTCTTGGT...............................................................................21112110276121010002221300304240021010420000100010201000010000200000000000000010000000000000000000000000000000000100000000000001000001000000000000000001000000000000000000000000000000000000000000000000
.................................................GATATGTTTGATATTCTTGGTT..............................................................................221108331238115442011010000000024000030010220000000000001100010000000000101000000000001000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000
.................................................GATATGTTTGATATTCTTGG................................................................................20130242721426283424150012421121000000010550230000000501011001000000000000000020000000100000000000000000000000000000000000000000000000000004000000000000000000100000000000000000000000000000000000000000000
.................................................GATATGTTTGATATTCTTGGTTGT............................................................................24126121410010000000120100000000000000002000000000020100000000000000010000100000000002001000000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..................................................ATATGTTTGATATTCTTGGT...............................................................................20111001010000000001002000000010000001000000000000000000000000001000001000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................ATATGTTTGATATTCTTGGTT..............................................................................21115101050100000000000001000000000100000000000000000000000000010000000000001001000000000000000000000000000000000000000000000010000000000000000000000000000010000000000000000000000000000000000000
..................................................ATATGTTTGATATTCTTGGTTGT............................................................................2312000000000000000000000000000000100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................ATATGTTTGATATTCTTGGTTG.............................................................................22161033032092100000601400040103001112000100000000001001010000100000010000111000000000100001000001000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................ATATGTTTGATATTCTTGG................................................................................19121007160400000000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................ATATGTTTGATATTCTTG.................................................................................181412081180270000000002000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TATGTTTGATATTCTTGGTTG.............................................................................21142401030101100000200000000000003002000000000000000202000000000000002000031001001000100120000000000001000000000120000000000001000000000000000000000000000000000000102000000000000000000000000000
...................................................TATGTTTGATATTCTTGGT...............................................................................1915000100100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000
...................................................TATGTTTGATATTCTTGGTTGTTT..........................................................................2411000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TATGTTTGATATTCTTGGTT..............................................................................20116200000200000000010000100000000000001000100000001000010000001000100000010000000000000000001000010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...................................................TATGTTTGATATTCTTGG................................................................................1819000320200000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TATGTTTGATATTCTTGGTTGT............................................................................2218000000010000000100101000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ATGTTTGATATTCTTGGTTGTTTC.........................................................................2411000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ATGTTTGATATTCTTGGTT..............................................................................19122002111000000000100200000000000002000100000000000000010000000000010000021000000000000000001001010000000000000000000000000000100000000000000000000000000000000000002000000000000000000000000000
....................................................ATGTTTGATATTCTTGGT...............................................................................18118001120000010020100000000000000000000000000000000000000000000000100000001000000000000000001000000100000100000000000000000000000000000000000000000000011000000000002010000000000000000000000000
....................................................ATGTTTGATATTCTTGGTTGT............................................................................2116000000000100000000000000000000000000000000000000000000000000000000000001000001010000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ATGTTTGATATTCTTGGTTG.............................................................................20183102310101200103201000100010000005010630001000001001030000023000001000002001002100000120011110100200041200100010000000102100000000000000000000000000003000030100000000000000000000000000000000
.....................................................TGTTTGATATTCTTGGTTGT............................................................................2013000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................TGTTTGATATTCTTGGTTG.............................................................................19147300020270000101000000400000001000410000000000000000010000001000001100001100000000030010000000000001102010000000000000000020000001000000000000000000000000020000100000000000000000000000000000
.....................................................TGTTTGATATTCTTGGTT..............................................................................18112201210100000000100000011000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................................GTTTGATATTCTTGGTTG.............................................................................18112430853003200000152000030032110000110201001000001100000600000163001121000113100001000000020004130010010204111000000010000000000000000000000000000000000004000010000100000000000000000000000000000
......................................................GTTTGATATTCTTGGTTGT............................................................................1918100000000000000200000000000000000000000000000000000000000003000000000010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TTTGATATTCTTGGTTGT............................................................................1811000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TGTTTCATTCAAAAGTTCAC...........................................................2011000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTTCATTCAAAAGTTCACCCAGGAA....................................................2511000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTTCATTCAAAAGTTCAC...........................................................1811000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTTCATTCAAAAGTTCACCCAGGA.....................................................2411000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AAGTTCACCCAGGAATCAAACATATT.........................................2612200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TCACCCAGGAATCAAACATATTAT.......................................2411000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TCACCCAGGAATCAAACATATTATT......................................2511000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TCACCCAGGAATCAAACATATTA........................................2311000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TCACCCAGGAATCAAACATATT.........................................2212000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................ACCCAGGAATCAAACATATTATT......................................2317020000001010000010000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................ACCCAGGAATCAAACATATTATTA.....................................2418000000000000000010000000002000000000000000000000000000000010010000000100000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................ACCCAGGAATCAAACATATTAT.......................................2211000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................ACCCAGGAATCAAACATATTA........................................2113000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000
.........................................................................................CCCAGGAATCAAACATATTATTACTGTG................................2811000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CCCAGGAATCAAACATATTA........................................2017661018216365011530156190123690201020005320220111500003100500019044110100310032112268043100200904703000010001023001000001003001001040011000001000001110001012040000005000000000000000000000010010000000000000000
.........................................................................................CCCAGGAATCAAACATATTATTA.....................................231404011011639551871379330202110263217315629322233051452448417828920488181510132327400105881291760751176631859130872715342782418293402257285053982105746157218154124134421163111291919199289181233330118404101323581536592175031216031325902080120000612210050301102070010030420000000000000000
.........................................................................................CCCAGGAATCAAACATAT..........................................18117000000001020003200000100000004000000000000000000000001000000000000000100000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CCCAGGAATCAAACATATTATTAC....................................24110000000000000000000100000000000000000000000000000000003050000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CCCAGGAATCAAACATATTATT......................................2214470140154947952884653193186166113442136259183038483965022175284851333142941109753341000125881132417113258457573130121662865275252603146134025672705030620389257142061324719131414212101001113001317961111113111211761512501319415247329279361400248402000031200003030200000000000000000000000
.........................................................................................CCCAGGAATCAAACATATT.........................................1911117715131054301041633002100000003200000050300000900030100010001003010040001010000010000010000000000000000000200000000000000000001100000000000000000000000000000000000000000000000000000000000000
.........................................................................................CCCAGGAATCAAACATATTAT.......................................211145335782349162915337571707783510416681173202123089850121504133030040001272355633220090795015231112805280508020015803112034038251410100022202800230200135201211161021302112021105020010000100000030100001000000002000000000000000000
.........................................................................................CCCAGGAATCAAACATATTATTACT...................................2511000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................CCAGGAATCAAACATATTA........................................19114000001000010000100004000000000000000000000100000000000000000001000020000000000000000010000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................CCAGGAATCAAACATATTATTA.....................................22197191214201010030400528001000008001000510000500000001300000031001400110010002001020000000000300100200000000000000001001000000000000000010000000010000000000000000000010000000000000000000000000
..........................................................................................CCAGGAATCAAACATATTAT.......................................20136030212002350000000002000000003000000000000000000070100000002000000000000001000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000
..........................................................................................CCAGGAATCAAACATATTATT......................................2111105915532014410336021012000020103100000210000400000070500000000002600110000001001010000000000000000000000000000000001000001000000000000100000000000000000000000000000000000001000000000000000000
..........................................................................................CCAGGAATCAAACATATTATTAC....................................2311000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CAGGAATCAAACATATTATT......................................20110111120001110000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CAGGAATCAAACATATTAT.......................................1913201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CAGGAATCAAACATATTATTA.....................................21112001002000120000003001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CAGGAATCAAACATATTA........................................1811000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
............................................................................................AGGAATCAAACATATTAT.......................................1812000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AGGAATCAAACATATTATT......................................1913002000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GGAATCAAACATATTATTA.....................................1911100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GAATCAAACATATTATTA.....................................1812000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................ATATTATTACTGTGACCCT...........................1912000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CTGTGACCCTCGCCAATCTAC................2114000000030001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                                     SizeBlastTotalSRR031696_2152 SRR031703 Total small RNAs from r2d2 homozygous flies SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR029633 total small RNAs from hen1 homozygous flies SRR031699 Total small RNAs from dcr-2 homozygous flies SRR031701 Total small RNAs from r2d2 heterozygous flies SRR031692 Total small RNAs from Oregon R S29 male head #1OSS8 Drosophila OSS cell small RNA libraries, rep4 OSS6 Drosophila OSS cell small RNA libraries, rep2 OSS2 Drosophila OSS cell small RNA libraries, rep1 SRR001338 IR non-beta-eliminated SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies OSS7 Drosophila OSS cell small RNA libraries, rep3 V076 ML-DmBG3-C2S22 female head #1SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies S30 s2-48 #2S33 KC-48 #2V009 CMEL1S32 s2+48 #2S28 0-2d pupaeSRR001345 ago2 non-beta-eliminated S12 6-10h #1 (10)SRR031693_4 S13 6-10h #2 (11)SRR001347 ago2 untreated SRR001664 homozygous dcr-2_untreated V033 CMEW1 Cl.8+ cellSRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies SRR001343 dcr-2 non-beta-eliminated V082 embryo 14-24hrS31 s2+48 #1S10 2-6h #1 (8)S24 male body #2V098 dcr-2[L811fsX] ovaryV019 GM2 cellS9 0-1h #3 (7)SRR001349 heterozygous dcr-2_untreated SRR010955 Aub IP in Ago3 heterozygotes SRR010959 Ago3 IP in heterozygotes V028 CMEW1 Cl.8+ cellSRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated V021 ML-DmD21 cellS16 KC -48 #1S21 disk #2S1 male headSRR029030 dcr-2 knockdown S2 female headV010 MLDmD20c5V097 CS ovaryGSM467729 WT SRR001344 dcr-2 beta-eliminated GSM467730 r2d2 S35 KC+48 #2SRR010956 Piwi IP in Ago3 heterozygotes V081 embryo 2-6hrSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 S27 0-1d Pupae (w)GSM180328 adult heads (female heads, male heads) V008 S2-DRSCV065 dcr-2[L811fsX], ovary, AGO1IPS19 2-4day pupae #1V001 IR-V020 S2R+ cellV075 ML-DmBG1-C1SRR010953 Aub heterozygotes, oxidized S15 S2 -48 #1V063 CS,ovary,AGO1IPSRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 S5 imaginal discSRR010954 Aub trans-heterozygotes, oxidized V088 r2d2[1] ovary total RNA  S7 12-24hr embryoS23 female body #2V018 Kc167 cellSRR010958 Piwi IP in Ago3 trans-heterozygotes V026 1182-4H cellV011 Sg4S34 KC+48 #1SRR014280 Ovary_rep1 w1118_P S14 0-1hr #1 (A)GSM379063 Vasa Heterozygote V002 IR+S25 1st instar #1GSM424739 S2 parental GSM180333 late embryo (12-24) SRR014275 Ovary_rep1 LK_P V066 r2d2[1], ovary, AGO1IPSRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 V090 CS  male total RNA  V067 S2-NPV083 male, one daySRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM379066 Zuc Mutant GSM379060 SpnE Heterozygote GSM379065 Zuc Heterozygote V084 female, one daySRR014282 Ovary_rep1 wK_P SRR014277 Ovary_rep1 NA_P V089 ago2[414] ovary total RNA  S26 1st instar #2GSM379064 Vasa Mutant V024 kc167 cellGSM467731 loq SRR010960 wt, oxidized GSM379052 Aub Heterozygote GSM379062 Squ Mutant SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S8 S2-48,+48, KC-48, +48 mixGSM379061 Squ Heterozygote GSM379057 Krimp Mutant S3 male bodySRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 V064 ago2[414], ovary, AGO1IPGSM379067 SpnE Mutant GSM180332 mid embryo (6-10) SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM379058 GSM379051 Armi Mutant GSM180335 imaginal discs SRR032095 AGO1 IP dcr2 knockdown S11 2-6h #2 (9)SRR001348 ago2 oxidized S17 3rd inster #1SRR029032 r2d2 knockdown SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V025 S2R+ cellS4 female bodyGSM379050 Armi Heterozygote GSM379056 Krimp Heterozygote GSM379054 Flam Heterozygote S18 3rd inster #2GSM280088 S2cell (AGO1IP) GSM180337 tissue culture cells (S2 only) SRR032093 ago1 knockdown SRR032094 ago2 knockdown SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb GSM379053 Aub Mutant S20 2-4day pupae#2GSM379059 GSM180329 adult bodies (female bodies, male bodies) SRR010951 Ago3 heterozygotes, oxidized GSM424740 S2 pKF63 stably transfected SRR029029 dcr-1 knockdown SRR029028 untreated (mock) SRR001337 WT_females beta-eliminated SRR014273 Ovary_rep1_Har_P GSM180331 early embryo (2-6) GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day SRR029033 lacZ knockdown GSM343287 Drosophila Toll 10b mutant embryos GSM280083 dcr-2-/- ovaries (18-29nt) SRR001340 IR beta-eliminated GSM379055 Flam Mutant SRR010952 Ago3 trans-heterozygotes, oxidized GSM180334 larvae: 1st instar and 3rd instars GSM280082 WT ovaries (18-29nt) SRR001346 ago2 beta-eliminated SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb GSM180330 very early embryo (0-1) GSM280085 WT testes (18-24nt) SRR023400 total RNA extracted from P19 cells GSM280084 loqs-/- ovaries (18-29nt) SRR001342 WT_males beta-eliminated GSM246084 D. melanogaster adult male heads 454 GSM239052 S2 cells, non beta-eliminated GSM280087 S2cell (AGO2IP) SRR029031 loqs-ORF knockdown SRR032092 mock oxidized SRR032096 AGO2 IP dcr2 knockdownSRR023399 RNA bound by P19 protein GSM239041 fly heads, non beta-eliminated SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023197 RNA Library from S2 control cells SRR023407 RNA bound by NLS-P19 protein GSM239051 S2 cells, beta-eliminated GSM280086 WT ovaries (AGO2IP) GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR023402 total RNA extracted from NLS-P19 cells GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM239050 fly heads, beta-eliminated GSM424741 S2 pKF63 transiently transfected GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0