Page generated on Fri Oct 15 12:01:42 2010

dme-mir-193




dme-mir-193

View dme-mir-193 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-193157697313637777210317338323777731733


GAAGTCGGGTTTTGATCGCAATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGACGTTCATGTG
.............................(((.(((((((((.(((((((((..(((..(((.((.(((.(((....))).)))............)).)))..)))..)))))))))))))))))).)))..........................-33.12
(((((((..(((((..((((.....))))(((.(((((((((.(((((((((..(((..(((.((.(((.(((....))).)))............)).)))..)))..)))))))))))))))))).))).....)).)))..)))).))).....-44.22
Sense strand
                                                                                                                                                             SizeBlastTotalS29 male head #1SRR031703 Total small RNAs from r2d2 homozygous flies S22 female head #1SRR031696_2152 SRR029633 total small RNAs from hen1 homozygous flies SRR031701 Total small RNAs from r2d2 heterozygous flies SRR031692 Total small RNAs from Oregon R SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR031699 Total small RNAs from dcr-2 homozygous flies S2 female headS1 male headSRR001349 heterozygous dcr-2_untreated SRR001347 ago2 untreated SRR001338 IR non-beta-eliminated SRR001664 homozygous dcr-2_untreated GSM180328 adult heads (female heads, male heads) SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies V090 CS  male total RNA  GSM467730 r2d2 SRR031693_4 SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR001345 ago2 non-beta-eliminated GSM467729 WT V083 male, one daySRR031704 2-O-methylated small RNAs from r2d2 homozygous flies V084 female, one dayS33 KC-48 #2SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated SRR001343 dcr-2 non-beta-eliminated GSM467731 loq SRR001344 dcr-2 beta-eliminated SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies SRR001348 ago2 oxidized S32 s2+48 #2GSM239041 fly heads, non beta-eliminated S16 KC -48 #1S23 female body #2S24 male body #2S34 KC+48 #1S35 KC+48 #2V098 dcr-2[L811fsX] ovaryV008 S2-DRSCSRR001337 WT_females beta-eliminated S28 0-2d pupaeS9 0-1h #3 (7)S4 female bodyS13 6-10h #2 (11)V097 CS ovaryGSM239052 S2 cells, non beta-eliminated V033 CMEW1 Cl.8+ cellGSM246084 D. melanogaster adult male heads 454 OSS2 Drosophila OSS cell small RNA libraries, rep1 OSS6 Drosophila OSS cell small RNA libraries, rep2 V076 ML-DmBG3-C2SRR001340 IR beta-eliminated S3 male bodySRR001346 ago2 beta-eliminated GSM280087 S2cell (AGO2IP) S11 2-6h #2 (9)OSS8 Drosophila OSS cell small RNA libraries, rep4 OSS7 Drosophila OSS cell small RNA libraries, rep3 GSM239050 fly heads, beta-eliminated V024 kc167 cellV075 ML-DmBG1-C1SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb S18 3rd inster #2S20 2-4day pupae#2SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S27 0-1d Pupae (w)S12 6-10h #1 (10)GSM379063 Vasa Heterozygote SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V065 dcr-2[L811fsX], ovary, AGO1IPSRR014273 Ovary_rep1_Har_P V001 IR-GSM280085 WT testes (18-24nt) SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 V018 Kc167 cellSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 V088 r2d2[1] ovary total RNA  GSM379065 Zuc Heterozygote V089 ago2[414] ovary total RNA  S21 disk #2V081 embryo 2-6hrSRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 S8 S2-48,+48, KC-48, +48 mixSRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM180329 adult bodies (female bodies, male bodies) S14 0-1hr #1 (A)V063 CS,ovary,AGO1IPV010 MLDmD20c5V028 CMEW1 Cl.8+ cellS25 1st instar #1GSM379062 Squ Mutant S10 2-6h #1 (8)GSM379066 Zuc Mutant SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 V019 GM2 cellGSM379054 Flam Heterozygote SRR001342 WT_males beta-eliminated SRR032095 AGO1 IP dcr2 knockdown V026 1182-4H cellS15 S2 -48 #1GSM379058 S19 2-4day pupae #1SRR014282 Ovary_rep1 wK_P GSM239051 S2 cells, beta-eliminated V002 IR+S7 12-24hr embryoGSM379056 Krimp Heterozygote V066 r2d2[1], ovary, AGO1IPGSM379052 Aub Heterozygote SRR014275 Ovary_rep1 LK_P GSM379064 Vasa Mutant GSM379053 Aub Mutant SRR010959 Ago3 IP in heterozygotes SRR014277 Ovary_rep1 NA_P S30 s2-48 #2V011 Sg4GSM343287 Drosophila Toll 10b mutant embryos V067 S2-NPSRR010955 Aub IP in Ago3 heterozygotes SRR032093 ago1 knockdown SRR010953 Aub heterozygotes, oxidized V064 ago2[414], ovary, AGO1IPGSM379067 SpnE Mutant S31 s2+48 #1SRR010956 Piwi IP in Ago3 heterozygotes SRR010954 Aub trans-heterozygotes, oxidized SRR023400 total RNA extracted from P19 cells V082 embryo 14-24hrGSM379055 Flam Mutant GSM280088 S2cell (AGO1IP) SRR014280 Ovary_rep1 w1118_P GSM180331 early embryo (2-6) GSM180330 very early embryo (0-1) S5 imaginal discGSM379051 Armi Mutant SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb V025 S2R+ cellGSM379061 Squ Heterozygote GSM280082 WT ovaries (18-29nt) GSM379057 Krimp Mutant GSM280086 WT ovaries (AGO2IP) S26 1st instar #2GSM180333 late embryo (12-24) SRR032094 ago2 knockdown GSM180332 mid embryo (6-10) V009 CMEL1GSM180335 imaginal discs GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR029031 loqs-ORF knockdown SRR010957 Aub IP in Ago3 trans-heterozygotes GSM379050 Armi Heterozygote SRR010952 Ago3 trans-heterozygotes, oxidized GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day SRR023197 RNA Library from S2 control cells SRR032092 mock oxidized SRR029033 lacZ knockdown GSM424740 S2 pKF63 stably transfected V020 S2R+ cellSRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR010960 wt, oxidized SRR023402 total RNA extracted from NLS-P19 cells GSM280084 loqs-/- ovaries (18-29nt) GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) SRR029029 dcr-1 knockdown GSM180334 larvae: 1st instar and 3rd instars SRR029032 r2d2 knockdown GSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownV021 ML-DmD21 cellGSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR023399 RNA bound by P19 protein GSM379060 SpnE Heterozygote SRR029030 dcr-2 knockdown GSM424739 S2 parental GSM280083 dcr-2-/- ovaries (18-29nt) GSM379059 SRR029028 untreated (mock) SRR010951 Ago3 heterozygotes, oxidized S17 3rd inster #1
....................ATCCGTGTGTGCCCTTATTATG...................................................................................................................2211000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CCGTGTGTGCCCTTATTATGGT.................................................................................................................2211000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGTGTGTGCCCTTATTATGGT.................................................................................................................2112000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GTGTGTGCCCTTATTATGGT.................................................................................................................2011000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGATCA................................................................................................2011660260173038636005635007000102410002000200000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGAT..................................................................................................18118052002100000110000000000500000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGATCAGCAGTTA.........................................................................................2711000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGATCAGCA.............................................................................................2311946212364104207180147176936524153843345141264100171297616887361601011200330010000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGATC.................................................................................................19123060172110000103000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGATCAGC..............................................................................................221893471848139866557332942121751021244126448850121241183300100000710000001021000000100000000000000000001100000000002000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGATCAG...............................................................................................2111291429231881322346651371149484936002212281432820005810700000000100000000010110000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGATCAGCAGT...........................................................................................25132021010511100113001600212010000000000000000010000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGATCAGCAGTT..........................................................................................2616020000110001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGATCAGCAGTTATTGC.....................................................................................3112000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GGTTGGGATTTTTTAGATCAGCAG............................................................................................24112715918514971341081406769412637193641124100921710303044132241300000003130000000000010000100000000000000000000000000000000000000010000001000000000000000000100000000000000101000000000000000000000000000000000000000000000
..........................................GTTGGGATTTTTTAGATCAGCA.............................................................................................221497811156211011102000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GTTGGGATTTTTTAGATCAG...............................................................................................201164640146131321010110810766010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GTTGGGATTTTTTAGATCAGCAGT...........................................................................................2411000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GTTGGGATTTTTTAGATCAGC..............................................................................................21164713142153731561415217102250613322223100110101300000000000000000000000000000000000000000000010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GTTGGGATTTTTTAGATCAGCAG............................................................................................23138050082693001001010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
..........................................GTTGGGATTTTTTAGATCA................................................................................................191210000172000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GTTGGGATTTTTTAGATC.................................................................................................1812000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTGGGATTTTTTAGATCAGCAGTTA.........................................................................................2512000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTGGGATTTTTTAGATCA................................................................................................181942110101123262105330001001010400110002400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTGGGATTTTTTAGATCAGCA.............................................................................................21159873551260260599626795429273185945319215914412712103855013148234216328282021071641133600240010001011110210100320000000000000000000000201000000000100020000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...........................................TTGGGATTTTTTAGATCAGCAGTT..........................................................................................241542140237216001211000300031000111011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTGGGATTTTTTAGATCAG...............................................................................................1917722121472116229312421003325251900380211001800002050100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTGGGATTTTTTAGATCAGC..............................................................................................2012166764672225322831780737371460496856441152141841339601616250142501000001520000003001210110000020000001000000100000000030012100010101010000000000000000020000000000000000000000000000000000000000000000000000000000000000000
...........................................TTGGGATTTTTTAGATCAGCAGTTAT........................................................................................2611000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTGGGATTTTTTAGATCAGCAG............................................................................................221129886473074931292130412791411669465885640127733530414262087111153501926793466664314413290311230116610211009120421440030310006002327404122240320100010103002021000001010000111210200000000001001100001000100000000000000000000000000000000000000000000
...........................................TTGGGATTTTTTAGATCAGCAGTTATTGC.....................................................................................2911000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTGGGATTTTTTAGATCAGCAGT...........................................................................................23154130147534403227282603121371100231600171315960445040010000001010000000000000000000004000000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TGGGATTTTTTAGATCAGCAGTT..........................................................................................2311313342011615940064321001300422000330100000000000010000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TGGGATTTTTTAGATCAG...............................................................................................181490603418232003112000200020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TGGGATTTTTTAGATCAGC..............................................................................................191187105531519206610318651003110000100001103400000010100000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................TGGGATTTTTTAGATCAGCAGTTA.........................................................................................2415010001000002000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TGGGATTTTTTAGATCAGCA.............................................................................................2016015513021697068391414811151913120031301251510332200200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TGGGATTTTTTAGATCAGCAGT...........................................................................................2212260130472267623210214910283299384556401311044335325154297911515163865010010016430000905010300150000320000003200002432110210020020100021000201100010101111000000001110000100000000010000000000000000000000000000000000000000000000
............................................TGGGATTTTTTAGATCAGCAG............................................................................................2115299105136549469626546462251248208146209180170195355134635372621222221181391632000102310000323010210100000124002001030200001110000200000101000000001000000111000000001200000000000000010000000000000000000000000000000000000000000000000
.............................................GGGATTTTTTAGATCAGCAGT...........................................................................................21113051120010000011000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GGGATTTTTTAGATCAGCA.............................................................................................1913000010011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GGGATTTTTTAGATCAGCAG............................................................................................201440100398245000200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GGATTTTTTAGATCAGCAG............................................................................................1911000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GATTTTTTAGATCAGCAG............................................................................................1816011001201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GATTTTTTAGATCAGCAGT...........................................................................................1913000020000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................AGTTATTGCTATATAGCCATA.........................................................................2111000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCATATTTATA...................................................................2513001000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCATATTTAT....................................................................2412000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCATA.........................................................................1914000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCATATTTATAAAT................................................................2812000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCAT..........................................................................1811000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCATATTTATAAATCT..............................................................3016000002300000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCATATT.......................................................................21122000244252001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCATATTT......................................................................221311303010133103000200000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCATATTTATAAATC...............................................................2911000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCATATTTATAA..................................................................2613002000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTATTGCTATATAGCCATATTTA.....................................................................2311001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATATTTATA...................................................................2413002000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATATTTATAAATC...............................................................2813001010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATA.........................................................................1816000000100000000000000000300000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATATTTATAA..................................................................2511000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATATT.......................................................................20116000451200011002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATATTTATAAAT................................................................2715000000010100000000000100000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATATTTATAAATCTT.............................................................3015000010200000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATATTT......................................................................21167144521158102101111000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATATTTA.....................................................................2211000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATATTTAT....................................................................2319200001103010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTGCTATATAGCCATATTTATAAATCT..............................................................29113000050300001200000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................ATTGCTATATAGCCATATTT......................................................................2011000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TTGCTATATAGCCATATTTATAA..................................................................2312000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................ATCTTCTACTGGCCTACTAAGTCCCAAC......................................2811000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CTACTGGCCTACTAAGTCCC.........................................2011000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CTACTGGCCTACTAAGTCCCA........................................2118000100021000000030010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CTACTGGCCTACTAAGTCCCAAC......................................2317000001121000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CTACTGGCCTACTAAGTCCCAA.......................................2218000020121000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TACTGGCCTACTAAGTCCCA........................................201596024762286205691321409121429127828541524257993910242031072180141111122697821573630013334080010002100010000010020000000000001000000000000000001000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................TACTGGCCTACTAAGTCCC.........................................1914361678723222109141322290732010301040000110000113121000000100020000001000010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TACTGGCCTACTAAGTCCCAAC......................................221936147525514671389947861672426704544235133322215912813369202837763229112152432272018181400017136102800240220011328000650510000030000002101000100020100000001020201000000001000000001100000000000000000000000000000000000000000000000000000000000
.................................................................................................TACTGGCCTACTAAGTCCCAACA.....................................2313511672509417712401211111120900140000000100010111000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TACTGGCCTACTAAGTCCCAACATAATG................................2811000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TACTGGCCTACTAAGTCCCAA.......................................2116694263012211293101674710528539248629337432242190693414895733611211131113192688471005760010026004000220000100010000010000000010003100020000000000000000000000001000000000000000001100000000000000000000000000000000000000000000000000
.................................................................................................TACTGGCCTACTAAGTCCCAACAT....................................24110101100000000000000500020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TACTGGCCTACTAAGTCC..........................................181853715277048211101010000010000000012001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.................................................................................................TACTGGCCTACTAAGTCCCAACATAATGA...............................2911000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................ACTGGCCTACTAAGTCCCAACA.....................................22145802269982231101029753630218300031172410821943011000540000029041121157110001154000011002000000000120000100000000001001000200000100000000000001000000000000020000000010000000000000000000000000000000000000000000000000000000
..................................................................................................ACTGGCCTACTAAGTCCCA........................................1914031354685237511721101020055002212020000000003010201000000003000000010000001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................ACTGGCCTACTAAGTCCCAACATA...................................2414000010000100000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................ACTGGCCTACTAAGTCCC.........................................1814420310171000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................ACTGGCCTACTAAGTCCCAACAT....................................2311050506161153521122234605731002225501111403310211001203051311010000103000000010100000000000200100000000001003001000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................ACTGGCCTACTAAGTCCCAA.......................................2018533569145111743191553590000195510525080107000007000111110000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................ACTGGCCTACTAAGTCCCAAC......................................2111221689020410958476653001034370024130402025000005030224220000010000022000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTGGCCTACTAAGTCCCAACAT....................................22117601010012300000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTGGCCTACTAAGTCCCAACATA...................................2311000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTGGCCTACTAAGTCCCAA.......................................1914724010000010400000000000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTGGCCTACTAAGTCCCAAC......................................2018451181001007400000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTGGCCTACTAAGTCCCAACA.....................................211573804000021320000210010000000000000000100000000000000000000000001000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTGGCCTACTAAGTCCCA........................................181181202000000110000010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGGCCTACTAAGTCCCAACATAA..................................23115300000010010000000800000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGGCCTACTAAGTCCCAA.......................................1811000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGGCCTACTAAGTCCCAAC......................................19115703000000100000000100000000000200000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGGCCTACTAAGTCCCAACAT....................................211306360120000124901004008600042000000010600000000100000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGGCCTACTAAGTCCCAACA.....................................201523101000011200000100600020000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGGCCTACTAAGTCCCAACATAAT.................................2411000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGGCCTACTAAGTCCCAACATA...................................221429050000013200004005000100000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TGGCCTACTAAGTCCCAACATAATGAGAG............................2911000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CCTACTAAGTCCCAACAT....................................1812000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                                             SizeBlastTotalS29 male head #1SRR031703 Total small RNAs from r2d2 homozygous flies S22 female head #1SRR031696_2152 SRR029633 total small RNAs from hen1 homozygous flies SRR031701 Total small RNAs from r2d2 heterozygous flies SRR031692 Total small RNAs from Oregon R SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR031699 Total small RNAs from dcr-2 homozygous flies S2 female headS1 male headSRR001349 heterozygous dcr-2_untreated SRR001347 ago2 untreated SRR001338 IR non-beta-eliminated SRR001664 homozygous dcr-2_untreated GSM180328 adult heads (female heads, male heads) SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies V090 CS  male total RNA  GSM467730 r2d2 SRR031693_4 SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR001345 ago2 non-beta-eliminated GSM467729 WT V083 male, one daySRR031704 2-O-methylated small RNAs from r2d2 homozygous flies V084 female, one dayS33 KC-48 #2SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated SRR001343 dcr-2 non-beta-eliminated GSM467731 loq SRR001344 dcr-2 beta-eliminated SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies SRR001348 ago2 oxidized S32 s2+48 #2GSM239041 fly heads, non beta-eliminated S16 KC -48 #1S23 female body #2S24 male body #2S34 KC+48 #1S35 KC+48 #2V098 dcr-2[L811fsX] ovaryV008 S2-DRSCSRR001337 WT_females beta-eliminated S28 0-2d pupaeS9 0-1h #3 (7)S4 female bodyS13 6-10h #2 (11)V097 CS ovaryGSM239052 S2 cells, non beta-eliminated V033 CMEW1 Cl.8+ cellGSM246084 D. melanogaster adult male heads 454 OSS2 Drosophila OSS cell small RNA libraries, rep1 OSS6 Drosophila OSS cell small RNA libraries, rep2 V076 ML-DmBG3-C2SRR001340 IR beta-eliminated S3 male bodySRR001346 ago2 beta-eliminated GSM280087 S2cell (AGO2IP) S11 2-6h #2 (9)OSS8 Drosophila OSS cell small RNA libraries, rep4 OSS7 Drosophila OSS cell small RNA libraries, rep3 GSM239050 fly heads, beta-eliminated V024 kc167 cellV075 ML-DmBG1-C1SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb S18 3rd inster #2S20 2-4day pupae#2SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S27 0-1d Pupae (w)S12 6-10h #1 (10)GSM379063 Vasa Heterozygote SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V065 dcr-2[L811fsX], ovary, AGO1IPSRR014273 Ovary_rep1_Har_P V001 IR-GSM280085 WT testes (18-24nt) SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 V018 Kc167 cellSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 V088 r2d2[1] ovary total RNA  GSM379065 Zuc Heterozygote V089 ago2[414] ovary total RNA  S21 disk #2V081 embryo 2-6hrSRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 S8 S2-48,+48, KC-48, +48 mixSRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM180329 adult bodies (female bodies, male bodies) S14 0-1hr #1 (A)V063 CS,ovary,AGO1IPV010 MLDmD20c5V028 CMEW1 Cl.8+ cellS25 1st instar #1GSM379062 Squ Mutant S10 2-6h #1 (8)GSM379066 Zuc Mutant SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 V019 GM2 cellGSM379054 Flam Heterozygote SRR001342 WT_males beta-eliminated SRR032095 AGO1 IP dcr2 knockdown V026 1182-4H cellS15 S2 -48 #1GSM379058 S19 2-4day pupae #1SRR014282 Ovary_rep1 wK_P GSM239051 S2 cells, beta-eliminated V002 IR+S7 12-24hr embryoGSM379056 Krimp Heterozygote V066 r2d2[1], ovary, AGO1IPGSM379052 Aub Heterozygote SRR014275 Ovary_rep1 LK_P GSM379064 Vasa Mutant GSM379053 Aub Mutant SRR010959 Ago3 IP in heterozygotes SRR014277 Ovary_rep1 NA_P S30 s2-48 #2V011 Sg4GSM343287 Drosophila Toll 10b mutant embryos V067 S2-NPSRR010955 Aub IP in Ago3 heterozygotes SRR032093 ago1 knockdown SRR010953 Aub heterozygotes, oxidized V064 ago2[414], ovary, AGO1IPGSM379067 SpnE Mutant S31 s2+48 #1SRR010956 Piwi IP in Ago3 heterozygotes SRR010954 Aub trans-heterozygotes, oxidized SRR023400 total RNA extracted from P19 cells V082 embryo 14-24hrGSM379055 Flam Mutant GSM280088 S2cell (AGO1IP) SRR014280 Ovary_rep1 w1118_P GSM180331 early embryo (2-6) GSM180330 very early embryo (0-1) S5 imaginal discGSM379051 Armi Mutant SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb V025 S2R+ cellGSM379061 Squ Heterozygote GSM280082 WT ovaries (18-29nt) GSM379057 Krimp Mutant GSM280086 WT ovaries (AGO2IP) S26 1st instar #2GSM180333 late embryo (12-24) SRR032094 ago2 knockdown GSM180332 mid embryo (6-10) V009 CMEL1GSM180335 imaginal discs GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR029031 loqs-ORF knockdown SRR010957 Aub IP in Ago3 trans-heterozygotes GSM379050 Armi Heterozygote SRR010952 Ago3 trans-heterozygotes, oxidized GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day SRR023197 RNA Library from S2 control cells SRR032092 mock oxidized SRR029033 lacZ knockdown GSM424740 S2 pKF63 stably transfected V020 S2R+ cellSRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR010960 wt, oxidized SRR023402 total RNA extracted from NLS-P19 cells GSM280084 loqs-/- ovaries (18-29nt) GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) SRR029029 dcr-1 knockdown GSM180334 larvae: 1st instar and 3rd instars SRR029032 r2d2 knockdown GSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownV021 ML-DmD21 cellGSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR023399 RNA bound by P19 protein GSM379060 SpnE Heterozygote SRR029030 dcr-2 knockdown GSM424739 S2 parental GSM280083 dcr-2-/- ovaries (18-29nt) GSM379059 SRR029028 untreated (mock) SRR010951 Ago3 heterozygotes, oxidized S17 3rd inster #1
...............TCGCAATCCGTGTGTGCCCTT.........................................................................................................................2111000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATGGTTGGGATTTTTTAGATCAG...............................................................................................2311000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CAGTTATTGCTATATAGCCA...........................................................................2011000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000