Page generated on Fri Oct 15 12:01:22 2010

dme-mir-210




dme-mir-210

View dme-mir-210 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-2101491093697370591105637026713105637037059


GATTCACCGACCACGTCCGGAACCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTTAAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGCCAGCCATTGTTCCATCATCGTGGTG
............................(((.(((((...((((((((..((((((((((((.............))))))))).))).))))))))...)))))..)))......((....)).........................-38.12
.........((((((...(((((.....(((.(((((...((((((((..((((((((((((.............))))))))).))).))))))))...)))))..)))......((....))........))))).....)))))).-53.32
Sense strand
                                                                                                                                                     SizeBlastTotalSRR031696_2152 SRR029633 total small RNAs from hen1 homozygous flies S29 male head #1SRR031699 Total small RNAs from dcr-2 homozygous flies SRR031703 Total small RNAs from r2d2 homozygous flies SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR001338 IR non-beta-eliminated V090 CS  male total RNA  SRR031692 Total small RNAs from Oregon R SRR031701 Total small RNAs from r2d2 heterozygous flies SRR001347 ago2 untreated SRR001345 ago2 non-beta-eliminated S22 female head #1SRR001664 homozygous dcr-2_untreated SRR001349 heterozygous dcr-2_untreated V083 male, one daySRR031693_4 SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies GSM467729 WT SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies GSM467730 r2d2 S2 female headSRR001343 dcr-2 non-beta-eliminated V084 female, one daySRR001344 dcr-2 beta-eliminated GSM467731 loq SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies S1 male headSRR001348 ago2 oxidized SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies GSM180328 adult heads (female heads, male heads) V008 S2-DRSCS28 0-2d pupaeS24 male body #2GSM239041 fly heads, non beta-eliminated S27 0-1d Pupae (w)GSM239052 S2 cells, non beta-eliminated SRR001337 WT_females beta-eliminated SRR001346 ago2 beta-eliminated V076 ML-DmBG3-C2GSM280087 S2cell (AGO2IP) SRR001340 IR beta-eliminated S23 female body #2S18 3rd inster #2V082 embryo 14-24hrV002 IR+GSM239050 fly heads, beta-eliminated S20 2-4day pupae#2S32 s2+48 #2V001 IR-S19 2-4day pupae #1GSM246084 D. melanogaster adult male heads 454 SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR032092 mock oxidized S4 female bodyS9 0-1h #3 (7)V098 dcr-2[L811fsX] ovaryS21 disk #2GSM239051 S2 cells, beta-eliminated V081 embryo 2-6hrS5 imaginal discSRR032094 ago2 knockdown V011 Sg4S3 male bodySRR001342 WT_males beta-eliminated S34 KC+48 #1S10 2-6h #1 (8)S35 KC+48 #2SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S7 12-24hr embryoS17 3rd inster #1SRR029033 lacZ knockdown V089 ago2[414] ovary total RNA  V097 CS ovarySRR029032 r2d2 knockdown S25 1st instar #1SRR029029 dcr-1 knockdown S12 6-10h #1 (10)GSM280088 S2cell (AGO1IP) S33 KC-48 #2GSM180329 adult bodies (female bodies, male bodies) S13 6-10h #2 (11)GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM280084 loqs-/- ovaries (18-29nt) OSS2 Drosophila OSS cell small RNA libraries, rep1 V026 1182-4H cellV009 CMEL1OSS7 Drosophila OSS cell small RNA libraries, rep3 S30 s2-48 #2GSM280085 WT testes (18-24nt) SRR029030 dcr-2 knockdown SRR014277 Ovary_rep1 NA_P OSS6 Drosophila OSS cell small RNA libraries, rep2 GSM379057 Krimp Mutant S14 0-1hr #1 (A)GSM180334 larvae: 1st instar and 3rd instars SRR032093 ago1 knockdown GSM379052 Aub Heterozygote SRR014273 Ovary_rep1_Har_P S8 S2-48,+48, KC-48, +48 mixGSM379059 GSM180333 late embryo (12-24) OSS8 Drosophila OSS cell small RNA libraries, rep4 SRR014275 Ovary_rep1 LK_P GSM343287 Drosophila Toll 10b mutant embryos SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 S26 1st instar #2SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 GSM379050 Armi Heterozygote GSM379051 Armi Mutant SRR029028 untreated (mock) GSM379066 Zuc Mutant S11 2-6h #2 (9)V063 CS,ovary,AGO1IPV010 MLDmD20c5GSM379060 SpnE Heterozygote V024 kc167 cellV033 CMEW1 Cl.8+ cellV064 ago2[414], ovary, AGO1IPV088 r2d2[1] ovary total RNA  GSM379056 Krimp Heterozygote SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V066 r2d2[1], ovary, AGO1IPGSM379064 Vasa Mutant GSM379053 Aub Mutant V075 ML-DmBG1-C1SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM379062 Squ Mutant SRR010955 Aub IP in Ago3 heterozygotes GSM379058 V018 Kc167 cellGSM180332 mid embryo (6-10) S16 KC -48 #1GSM379065 Zuc Heterozygote GSM379063 Vasa Heterozygote V065 dcr-2[L811fsX], ovary, AGO1IPGSM379055 Flam Mutant SRR010959 Ago3 IP in heterozygotes SRR014280 Ovary_rep1 w1118_P GSM180331 early embryo (2-6) GSM180330 very early embryo (0-1) S15 S2 -48 #1GSM379067 SpnE Mutant GSM280086 WT ovaries (AGO2IP) SRR014282 Ovary_rep1 wK_P SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM180335 imaginal discs V019 GM2 cellGSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR029031 loqs-ORF knockdown S31 s2+48 #1SRR010957 Aub IP in Ago3 trans-heterozygotes SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR010952 Ago3 trans-heterozygotes, oxidized SRR023197 RNA Library from S2 control cells SRR010956 Piwi IP in Ago3 heterozygotes GSM424740 S2 pKF63 stably transfected SRR010954 Aub trans-heterozygotes, oxidized SRR023400 total RNA extracted from P19 cells V020 S2R+ cellSRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR010960 wt, oxidized SRR023402 total RNA extracted from NLS-P19 cells GSM379054 Flam Heterozygote GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) SRR032095 AGO1 IP dcr2 knockdown V028 CMEW1 Cl.8+ cellGSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownV021 ML-DmD21 cellGSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb V025 S2R+ cellGSM379061 Squ Heterozygote SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 V067 S2-NPGSM280082 WT ovaries (18-29nt) SRR023399 RNA bound by P19 protein GSM424739 S2 parental GSM280083 dcr-2-/- ovaries (18-29nt) SRR010951 Ago3 heterozygotes, oxidized SRR010953 Aub heterozygotes, oxidized
.......................................CAGCTGCTGGCCACTGCACAAG........................................................................................2216220000100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CAGCTGCTGGCCACTGCACA..........................................................................................2016001021000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CAGCTGCTGGCCACTGCACAA.........................................................................................2114120000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CAGCTGCTGGCCACTGCAC...........................................................................................1912000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CAGCTGCTGGCCACTGCACAAGAT......................................................................................24137747224102310002000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CAGCTGCTGGCCACTGCA............................................................................................1811000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CAGCTGCTGGCCACTGCACAAGA.......................................................................................231211120401001010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CAGCTGCTGGCCACTGCACAAGATT.....................................................................................2511000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACAAGATTAGACTT...............................................................................3011000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACAAGATTAGACT................................................................................2917010000000000000010000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACAAGAT......................................................................................23117452351110965279681847599425742111391141221315975866125344232640423015252516294211100010719278103004101820018512041044013005001164104700003040612200010000000200000010000100000000000000000000020000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACAAGATTAGACTTAAGAC..........................................................................3516000000000000000000203000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACAAGATTA....................................................................................2517100000000100000000302000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCAC...........................................................................................181561268120201500200013000400010071000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACA..........................................................................................19118310970819550410101201010301310013352230000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACAAGATTAG...................................................................................2611000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACAAGA.......................................................................................22115790290773449586127625144042367113815753078966426813179172782350121661617260512740181161115714217101072612028121255003002701220010110561100001070200400000000000110000011000200000300000000000000000000000000001000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACAAG........................................................................................211172420370721554436311245592316553011131256421203122959141101580200010014000061081001003002000001000200000000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACAA.........................................................................................201434443715482110709152149210658577200111312054000000000010000002010000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGCTGCTGGCCACTGCACAAGATT.....................................................................................24139260224717401250634332732001320277110051134021090000000001100010010000000001000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCTGCTGGCCACTGCACAA.........................................................................................1911000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCTGCTGGCCACTGCACAAGATT.....................................................................................231192013000000010000001001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCTGCTGGCCACTGCACAAGA.......................................................................................21121152544415580511125959000000330100001230030000000000200002000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCTGCTGGCCACTGCACA..........................................................................................18111008000000100000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCTGCTGGCCACTGCACAAGATTAGA..................................................................................2611000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCTGCTGGCCACTGCACAAG........................................................................................20124903101000100510001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCTGCTGGCCACTGCACAAGAT......................................................................................2212555216771381060614611165002000920000001201001010000000000000012000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CTGCTGGCCACTGCACAAGATT.....................................................................................22133050372402201000001200010100000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CTGCTGGCCACTGCACAAG........................................................................................19116311101000210100022000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CTGCTGGCCACTGCACAAGA.......................................................................................201411212120101210001012140030000002110000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CTGCTGGCCACTGCACAAGAT......................................................................................21115833113451196011162911014010140010021200000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGCTGGCCACTGCACAAGA.......................................................................................191281800202100000011000000020000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGCTGGCCACTGCACAAGAT......................................................................................20112045411055507530670000000080002204000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGCTGGCCACTGCACAAG........................................................................................1814003000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGCTGGCCACTGCACAAGATT.....................................................................................2119111000003100000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGCTGGCCACTGCACAAGATTAGAC.................................................................................2511000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GCTGGCCACTGCACAAGAT......................................................................................1915110000000000200000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GCTGGCCACTGCACAAGA.......................................................................................1811100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CTGGCCACTGCACAAGATTAGACTTAAGAC..........................................................................3011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CTGGCCACTGCACAAGAT......................................................................................1815100103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TGGCCACTGCACAAGATTAGACTTAAGAC..........................................................................2911100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................AAGATTAGACTTAAGACT.........................................................................1811000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TAGACTTAAGACTCTTGTGCGTGTGAC...........................................................2711000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TAGACTTAAGACTCTTGTGCGT................................................................2212100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TAGACTTAAGACTCTTGTGCG.................................................................2111010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TAGACTTAAGACTCTTGTGCGTGT..............................................................2411000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GACTTAAGACTCTTGTGCGTGTGAC...........................................................2512000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AAGACTCTTGTGCGTGTGACAGCGGCTAT..................................................2911000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................ACTCTTGTGCGTGTGACAGCGG......................................................2211000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CTCTTGTGCGTGTGACAGCGGCT....................................................2311000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CTCTTGTGCGTGTGACAGCGGCTA...................................................2411000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CTCTTGTGCGTGTGACAGCGG......................................................2111100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CTCTTGTGCGTGTGACAGCGGCTAT..................................................2518000003000020030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CTCTTGTGCGTGTGACAGCG.......................................................2011000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TCTTGTGCGTGTGACAGCGGCT....................................................2213000101000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TCTTGTGCGTGTGACAGCGGCTA...................................................2319000301010010000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TCTTGTGCGTGTGACAGCGGCTAT..................................................241348101015000200011111000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TCTTGTGCGTGTGACAGCGGCTATT.................................................2511000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TCTTGTGCGTGTGACAGCGGC.....................................................2111000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATTGTAAGAG..........................................31118000000000000000000909000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATTGTAAGA...........................................301250000000000000000001506000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCT....................................................211223568625022436890549128222656576175671340310293122284622417027983683391440146517326937183852210213789041001227122717852284519918279345100112232761938221112916036223073101652133101192431203101691873404015107125018030032000204322000140000100002020011200200001010100000100000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATTG................................................251232002010001000100000920760000580000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGC.....................................................20118466472814866375721007358146521345776193914702202412266319159772446503222311943226126121447236561815466512345115412253095140121510002011600702201110000440001000000010000000000000000130000000010000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTAT..................................................23126141279149240822863518149813913929549393541013151374908703996233236388344061634465162464554239289417381173264781281245192648212170338521024413114511701235576421161151166875166493424312644364525014222121571023180776660912171140211514425010002201113000022112001001000101110100100000100000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATT.................................................241598315534145163412402785767266146691961533046983115313335325149292494444281112616929517361200031001210002001000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATTGT...............................................2616000000000000000000302000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCA......................................351210000000000000000005014000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCG.......................................................18125414507941212611410497364092730475221331920000000210000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGG......................................................19148921583433253161364125333711522741161334150581835111641814358048842422319741901313100783351003160010111500001620010200000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATTGTAAGAGGC........................................33110800000000000000000058050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATTGTAA.............................................2819000000000000000000305000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCC.......................................34110000000000000000000208000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATTGTA..............................................27111000000000000000000308000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTA...................................................22186699282648603530844184974300436903678431526771437510871011819221403125142609785244205675478602704884882701642691249514049481084353787035273622242920101241194152996112070731940202002100041116101010000101000110000100110000000000000000101000000000000000000000000000000000000000000000000000000000000
............................................................................CTTGTGCGTGTGACAGCGGCTATTGTAAG............................................2914000000000000000000301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCTAT..................................................221277326677151951927399265856134179946624759794776298106434797459767155703322412175902522015167185826489991608903893489489198499550794565222725622312421410389445864210080741321155142794464376040533016820124213237211582015713597715104197368644340153452115420204010202001011001010000000011011000110000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCA......................................3411000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCTATTG................................................241147307011002100310000690400000180000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCTATTGTAA.............................................2714000000000000000000301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCTATT.................................................231569711704363535691993169848191181174134115115958719615131694214264650161022222698101815510506022311021803010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGG......................................................18110513019311343240432036353833723228613151394799310102144127000270410006000012000000020004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCAT.....................................3512000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCTATTGTA..............................................2614000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCT....................................................20181824177097521350448195216292179175096343241813542157813432967131417662112747946444370927703579235515511182453164008614317131736151833925467445218810213436110816641602111074010030084103000040031122120201000100100020000110010120111110000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCTATTGTAAGAGGCC.......................................3312000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCTATTGT...............................................251170110000000000000001005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGC.....................................................19135147503063965995424025365106104431272236711072541333322628271827272523133190090240860441000218000001000001610010100000000100000000000010000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGTGCGTGTGACAGCGGCTA...................................................2118103718222764032094639314231314925279231503006259533051703228410491078310232191453157117367643436725433003006061882616531351023929891562405427233511161413458155616987363041511528392103200003310100101010101003000001001000000000000010000001001000000011000000000000000000000000000000000000000000000000
..............................................................................TGTGCGTGTGACAGCGGCTA...................................................2015181177964915292222514161941915126213101021302253330000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TGTGCGTGTGACAGCGGCTAT..................................................2112214615205752842917368385261112927625151379233151910936655172301000000000001010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TGTGCGTGTGACAGCGGC.....................................................18131930120000030010000200001001160100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TGTGCGTGTGACAGCGGCT....................................................19164313780136138375943523401553124442010281204412200001001100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TGTGCGTGTGACAGCGGCTATTG................................................2311000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TGTGCGTGTGACAGCGGCTATT.................................................221601519604104011003032601100000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GTGCGTGTGACAGCGGCTA...................................................191705140785404140062021020011000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GTGCGTGTGACAGCGGCTAT..................................................2012626323044928951348103341911230011101140100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GTGCGTGTGACAGCGGCT....................................................181107261401842349800103210000021101110210000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GTGCGTGTGACAGCGGCTATT.................................................2113110000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGCGTGTGACAGCGGCTA...................................................18135410716007100000023020000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGCGTGTGACAGCGGCTATT.................................................2014010000002000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGCGTGTGACAGCGGCTAT..................................................19113371205032200101003000810020100000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GCGTGTGACAGCGGCTATT.................................................1911000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GCGTGTGACAGCGGCTAT..................................................1811253472210130016540721034110100000020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                                     SizeBlastTotalSRR031696_2152 SRR029633 total small RNAs from hen1 homozygous flies S29 male head #1SRR031699 Total small RNAs from dcr-2 homozygous flies SRR031703 Total small RNAs from r2d2 homozygous flies SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR001338 IR non-beta-eliminated V090 CS  male total RNA  SRR031692 Total small RNAs from Oregon R SRR031701 Total small RNAs from r2d2 heterozygous flies SRR001347 ago2 untreated SRR001345 ago2 non-beta-eliminated S22 female head #1SRR001664 homozygous dcr-2_untreated SRR001349 heterozygous dcr-2_untreated V083 male, one daySRR031693_4 SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies GSM467729 WT SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies GSM467730 r2d2 S2 female headSRR001343 dcr-2 non-beta-eliminated V084 female, one daySRR001344 dcr-2 beta-eliminated GSM467731 loq SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies S1 male headSRR001348 ago2 oxidized SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies GSM180328 adult heads (female heads, male heads) V008 S2-DRSCS28 0-2d pupaeS24 male body #2GSM239041 fly heads, non beta-eliminated S27 0-1d Pupae (w)GSM239052 S2 cells, non beta-eliminated SRR001337 WT_females beta-eliminated SRR001346 ago2 beta-eliminated V076 ML-DmBG3-C2GSM280087 S2cell (AGO2IP) SRR001340 IR beta-eliminated S23 female body #2S18 3rd inster #2V082 embryo 14-24hrV002 IR+GSM239050 fly heads, beta-eliminated S20 2-4day pupae#2S32 s2+48 #2V001 IR-S19 2-4day pupae #1GSM246084 D. melanogaster adult male heads 454 SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR032092 mock oxidized S4 female bodyS9 0-1h #3 (7)V098 dcr-2[L811fsX] ovaryS21 disk #2GSM239051 S2 cells, beta-eliminated V081 embryo 2-6hrS5 imaginal discSRR032094 ago2 knockdown V011 Sg4S3 male bodySRR001342 WT_males beta-eliminated S34 KC+48 #1S10 2-6h #1 (8)S35 KC+48 #2SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S7 12-24hr embryoS17 3rd inster #1SRR029033 lacZ knockdown V089 ago2[414] ovary total RNA  V097 CS ovarySRR029032 r2d2 knockdown S25 1st instar #1SRR029029 dcr-1 knockdown S12 6-10h #1 (10)GSM280088 S2cell (AGO1IP) S33 KC-48 #2GSM180329 adult bodies (female bodies, male bodies) S13 6-10h #2 (11)GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM280084 loqs-/- ovaries (18-29nt) OSS2 Drosophila OSS cell small RNA libraries, rep1 V026 1182-4H cellV009 CMEL1OSS7 Drosophila OSS cell small RNA libraries, rep3 S30 s2-48 #2GSM280085 WT testes (18-24nt) SRR029030 dcr-2 knockdown SRR014277 Ovary_rep1 NA_P OSS6 Drosophila OSS cell small RNA libraries, rep2 GSM379057 Krimp Mutant S14 0-1hr #1 (A)GSM180334 larvae: 1st instar and 3rd instars SRR032093 ago1 knockdown GSM379052 Aub Heterozygote SRR014273 Ovary_rep1_Har_P S8 S2-48,+48, KC-48, +48 mixGSM379059 GSM180333 late embryo (12-24) OSS8 Drosophila OSS cell small RNA libraries, rep4 SRR014275 Ovary_rep1 LK_P GSM343287 Drosophila Toll 10b mutant embryos SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 S26 1st instar #2SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 GSM379050 Armi Heterozygote GSM379051 Armi Mutant SRR029028 untreated (mock) GSM379066 Zuc Mutant S11 2-6h #2 (9)V063 CS,ovary,AGO1IPV010 MLDmD20c5GSM379060 SpnE Heterozygote V024 kc167 cellV033 CMEW1 Cl.8+ cellV064 ago2[414], ovary, AGO1IPV088 r2d2[1] ovary total RNA  GSM379056 Krimp Heterozygote SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V066 r2d2[1], ovary, AGO1IPGSM379064 Vasa Mutant GSM379053 Aub Mutant V075 ML-DmBG1-C1SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM379062 Squ Mutant SRR010955 Aub IP in Ago3 heterozygotes GSM379058 V018 Kc167 cellGSM180332 mid embryo (6-10) S16 KC -48 #1GSM379065 Zuc Heterozygote GSM379063 Vasa Heterozygote V065 dcr-2[L811fsX], ovary, AGO1IPGSM379055 Flam Mutant SRR010959 Ago3 IP in heterozygotes SRR014280 Ovary_rep1 w1118_P GSM180331 early embryo (2-6) GSM180330 very early embryo (0-1) S15 S2 -48 #1GSM379067 SpnE Mutant GSM280086 WT ovaries (AGO2IP) SRR014282 Ovary_rep1 wK_P SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM180335 imaginal discs V019 GM2 cellGSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR029031 loqs-ORF knockdown S31 s2+48 #1SRR010957 Aub IP in Ago3 trans-heterozygotes SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR010952 Ago3 trans-heterozygotes, oxidized SRR023197 RNA Library from S2 control cells SRR010956 Piwi IP in Ago3 heterozygotes GSM424740 S2 pKF63 stably transfected SRR010954 Aub trans-heterozygotes, oxidized SRR023400 total RNA extracted from P19 cells V020 S2R+ cellSRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR010960 wt, oxidized SRR023402 total RNA extracted from NLS-P19 cells GSM379054 Flam Heterozygote GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) SRR032095 AGO1 IP dcr2 knockdown V028 CMEW1 Cl.8+ cellGSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownV021 ML-DmD21 cellGSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb V025 S2R+ cellGSM379061 Squ Heterozygote SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 V067 S2-NPGSM280082 WT ovaries (18-29nt) SRR023399 RNA bound by P19 protein GSM424739 S2 parental GSM280083 dcr-2-/- ovaries (18-29nt) SRR010951 Ago3 heterozygotes, oxidized SRR010953 Aub heterozygotes, oxidized