miRNA | Length | Perfect(sense) | Perfect(antisense) | 5' moR | 5'arm | Loop | 3'arm | 3' moR | Other | Loop Size | Mature | Star |
dme-mir-2495 | 164 | 16 | 2 | 8 | 3 | 4 | 3 | 17 | 8 | 3 |
                                                                                                                                                                     | Size | Blast | Total | SRR010958 Piwi IP in Ago3 trans-heterozygotes | S2 female head | S24 male body #2 | V019 GM2 cell | GSM379065 Zuc Heterozygote | SRR031693_4 | SRR010952 Ago3 trans-heterozygotes, oxidized | S23 female body #2 | SRR010956 Piwi IP in Ago3 heterozygotes | GSM467731 loq | GSM467729 WT | S22 female head #1 | S27 0-1d Pupae (w) | S12 6-10h #1 (10) | SRR010951 Ago3 heterozygotes, oxidized | V081 embryo 2-6hr | GSM280087 S2cell (AGO2IP) | GSM379067 SpnE Mutant | GSM379058 | GSM280086 WT ovaries (AGO2IP) | SRR001347 ago2 untreated | S29 male head #1 | V090 CS male total RNA | S26 1st instar #2 | SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 | V008 S2-DRSC | S11 2-6h #2 (9) | GSM180333 late embryo (12-24) | V018 Kc167 cell | S19 2-4day pupae #1 | SRR014282 Ovary_rep1 wK_P | SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 | SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 | GSM239051 S2 cells, beta-eliminated | SRR029633 total small RNAs from hen1 homozygous flies | SRR032094 ago2 knockdown | S9 0-1h #3 (7) | SRR031699 Total small RNAs from dcr-2 homozygous flies | GSM180332 mid embryo (6-10) | S14 0-1hr #1 (A) | V002 IR+ | SRR031692 Total small RNAs from Oregon R | V009 CMEL1 | S16 KC -48 #1 | OSS8 Drosophila OSS cell small RNA libraries, rep4 | SRR001341 WT_males non-beta-eliminated | V063 CS,ovary,AGO1IP | GSM180335 imaginal discs | V098 dcr-2[L811fsX] ovary | GSM180328 adult heads (female heads, male heads) | S4 female body | GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries | SRR029031 loqs-ORF knockdown | V088 r2d2[1] ovary total RNA | S32 s2+48 #2 | S7 12-24hr embryo | S31 s2+48 #1 | SRR010957 Aub IP in Ago3 trans-heterozygotes | S13 6-10h #2 (11) | SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb | GSM379050 Armi Heterozygote | GSM379056 Krimp Heterozygote | GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day | SRR001337 WT_females beta-eliminated | V076 ML-DmBG3-C2 | SRR023197 RNA Library from S2 control cells | SRR032092 mock oxidized | SRR029033 lacZ knockdown | SRR001349 heterozygous dcr-2_untreated | V010 MLDmD20c5 | GSM424740 S2 pKF63 stably transfected | SRR010954 Aub trans-heterozygotes, oxidized | SRR023400 total RNA extracted from P19 cells | V082 embryo 14-24hr | SRR001345 ago2 non-beta-eliminated | GSM379063 Vasa Heterozygote | V020 S2R+ cell | SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb | SRR023407 RNA bound by NLS-P19 protein | GSM180337 tissue culture cells (S2 only) | SRR010960 wt, oxidized | SRR023402 total RNA extracted from NLS-P19 cells | V066 r2d2[1], ovary, AGO1IP | SRR001340 IR beta-eliminated | GSM280084 loqs-/- ovaries (18-29nt) | SRR031703 Total small RNAs from r2d2 homozygous flies | GSM379054 Flam Heterozygote | S18 3rd inster #2 | GSM379052 Aub Heterozygote | SRR014275 Ovary_rep1 LK_P | S34 KC+48 #1 | V065 dcr-2[L811fsX], ovary, AGO1IP | OSS2 Drosophila OSS cell small RNA libraries, rep1 | SRR001343 dcr-2 non-beta-eliminated | GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries | S1 male head | SRR014273 Ovary_rep1_Har_P | V089 ago2[414] ovary total RNA | GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries | SRR031697 Total small RNAs from dcr-2 heterozygous flies | SRR001342 WT_males beta-eliminated | GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries | GSM379064 Vasa Mutant | S33 KC-48 #2 | GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) | GSM379053 Aub Mutant | SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies | GSM246084 D. melanogaster adult male heads 454 | GSM239050 fly heads, beta-eliminated | SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies | GSM379055 Flam Mutant | SRR032095 AGO1 IP dcr2 knockdown | SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies | SRR029029 dcr-1 knockdown | GSM180334 larvae: 1st instar and 3rd instars | V028 CMEW1 Cl.8+ cell | GSM280088 S2cell (AGO1IP) | S3 male body | SRR010959 Ago3 IP in heterozygotes | SRR014280 Ovary_rep1 w1118_P | V026 1182-4H cell | GSM180331 early embryo (2-6) | V097 CS ovary | S25 1st instar #1 | SRR029032 r2d2 knockdown | SRR014277 Ovary_rep1 NA_P | S8 S2-48,+48, KC-48, +48 mix | OSS7 Drosophila OSS cell small RNA libraries, rep3 | GSM180330 very early embryo (0-1) | S5 imaginal disc | GSM424741 S2 pKF63 transiently transfected | SRR032096 AGO2 IP dcr2 knockdown | V021 ML-DmD21 cell | SRR001344 dcr-2 beta-eliminated | S15 S2 -48 #1 | GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 | SRR001339 WT_females non-beta-eliminated | SRR001348 ago2 oxidized | S21 disk #2 | GSM379051 Armi Mutant | V075 ML-DmBG1-C1 | SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb | SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies | SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb | S30 s2-48 #2 | GSM379062 Squ Mutant | V011 Sg4 | V025 S2R+ cell | S20 2-4day pupae#2 | SRR031696_2152 | SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb | SRR001664 homozygous dcr-2_untreated | GSM379061 Squ Heterozygote | SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 | GSM343287 Drosophila Toll 10b mutant embryos | V067 S2-NP | GSM280082 WT ovaries (18-29nt) | V001 IR- | SRR023399 RNA bound by P19 protein | SRR010955 Aub IP in Ago3 heterozygotes | GSM379060 SpnE Heterozygote | V083 male, one day | SRR001338 IR non-beta-eliminated | SRR031701 Total small RNAs from r2d2 heterozygous flies | SRR029030 dcr-2 knockdown | GSM239052 S2 cells, non beta-eliminated | GSM467730 r2d2 | S28 0-2d pupae | S10 2-6h #1 (8) | GSM239041 fly heads, non beta-eliminated | GSM424739 S2 parental | OSS6 Drosophila OSS cell small RNA libraries, rep2 | GSM280083 dcr-2-/- ovaries (18-29nt) | GSM379059 | SRR029028 untreated (mock) | SRR032093 ago1 knockdown | V024 kc167 cell | V033 CMEW1 Cl.8+ cell | GSM280085 WT testes (18-24nt) | GSM180329 adult bodies (female bodies, male bodies) | SRR001346 ago2 beta-eliminated | V084 female, one day | S17 3rd inster #1 | SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 | GSM379057 Krimp Mutant | GSM379066 Zuc Mutant | SRR010953 Aub heterozygotes, oxidized | V064 ago2[414], ovary, AGO1IP | S35 KC+48 #2 |
...........................................TGTGGGCGTGGCACTTCAATTGG.................................................................................................. | 23 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
...............................................GGCGTGGCACTTCAATTGGGC................................................................................................ | 21 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
...................................................TGGCACTTCAATTGGGCTGACT........................................................................................... | 22 | 1 | 7 | 0 | 2 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
......................................................CACTTCAATTGGGCTGACTTTGCCTG.................................................................................... | 26 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
..........................................................................................CGGCACCTAATTGAAATGCCCGCC.................................................. | 24 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
.............................................................................................CACCTAATTGAAATGCCCGCC.................................................. | 21 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
...............................................................................................CCTAATTGAAATGCCCGCCGA................................................ | 21 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
......................................................................................................................AGTGCTCGATTACGATCGACACAAGCGAC................. | 29 | 1 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
...............................................................................................................................TTACGATCGACACAAGCGAC................. | 20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
                                                                                                                                                                     | Size | Blast | Total | SRR010958 Piwi IP in Ago3 trans-heterozygotes | S2 female head | S24 male body #2 | V019 GM2 cell | GSM379065 Zuc Heterozygote | SRR031693_4 | SRR010952 Ago3 trans-heterozygotes, oxidized | S23 female body #2 | SRR010956 Piwi IP in Ago3 heterozygotes | GSM467731 loq | GSM467729 WT | S22 female head #1 | S27 0-1d Pupae (w) | S12 6-10h #1 (10) | SRR010951 Ago3 heterozygotes, oxidized | V081 embryo 2-6hr | GSM280087 S2cell (AGO2IP) | GSM379067 SpnE Mutant | GSM379058 | GSM280086 WT ovaries (AGO2IP) | SRR001347 ago2 untreated | S29 male head #1 | V090 CS male total RNA | S26 1st instar #2 | SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 | V008 S2-DRSC | S11 2-6h #2 (9) | GSM180333 late embryo (12-24) | V018 Kc167 cell | S19 2-4day pupae #1 | SRR014282 Ovary_rep1 wK_P | SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 | SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 | GSM239051 S2 cells, beta-eliminated | SRR029633 total small RNAs from hen1 homozygous flies | SRR032094 ago2 knockdown | S9 0-1h #3 (7) | SRR031699 Total small RNAs from dcr-2 homozygous flies | GSM180332 mid embryo (6-10) | S14 0-1hr #1 (A) | V002 IR+ | SRR031692 Total small RNAs from Oregon R | V009 CMEL1 | S16 KC -48 #1 | OSS8 Drosophila OSS cell small RNA libraries, rep4 | SRR001341 WT_males non-beta-eliminated | V063 CS,ovary,AGO1IP | GSM180335 imaginal discs | V098 dcr-2[L811fsX] ovary | GSM180328 adult heads (female heads, male heads) | S4 female body | GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries | SRR029031 loqs-ORF knockdown | V088 r2d2[1] ovary total RNA | S32 s2+48 #2 | S7 12-24hr embryo | S31 s2+48 #1 | SRR010957 Aub IP in Ago3 trans-heterozygotes | S13 6-10h #2 (11) | SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb | GSM379050 Armi Heterozygote | GSM379056 Krimp Heterozygote | GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day | SRR001337 WT_females beta-eliminated | V076 ML-DmBG3-C2 | SRR023197 RNA Library from S2 control cells | SRR032092 mock oxidized | SRR029033 lacZ knockdown | SRR001349 heterozygous dcr-2_untreated | V010 MLDmD20c5 | GSM424740 S2 pKF63 stably transfected | SRR010954 Aub trans-heterozygotes, oxidized | SRR023400 total RNA extracted from P19 cells | V082 embryo 14-24hr | SRR001345 ago2 non-beta-eliminated | GSM379063 Vasa Heterozygote | V020 S2R+ cell | SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb | SRR023407 RNA bound by NLS-P19 protein | GSM180337 tissue culture cells (S2 only) | SRR010960 wt, oxidized | SRR023402 total RNA extracted from NLS-P19 cells | V066 r2d2[1], ovary, AGO1IP | SRR001340 IR beta-eliminated | GSM280084 loqs-/- ovaries (18-29nt) | SRR031703 Total small RNAs from r2d2 homozygous flies | GSM379054 Flam Heterozygote | S18 3rd inster #2 | GSM379052 Aub Heterozygote | SRR014275 Ovary_rep1 LK_P | S34 KC+48 #1 | V065 dcr-2[L811fsX], ovary, AGO1IP | OSS2 Drosophila OSS cell small RNA libraries, rep1 | SRR001343 dcr-2 non-beta-eliminated | GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries | S1 male head | SRR014273 Ovary_rep1_Har_P | V089 ago2[414] ovary total RNA | GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries | SRR031697 Total small RNAs from dcr-2 heterozygous flies | SRR001342 WT_males beta-eliminated | GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries | GSM379064 Vasa Mutant | S33 KC-48 #2 | GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) | GSM379053 Aub Mutant | SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies | GSM246084 D. melanogaster adult male heads 454 | GSM239050 fly heads, beta-eliminated | SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies | GSM379055 Flam Mutant | SRR032095 AGO1 IP dcr2 knockdown | SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies | SRR029029 dcr-1 knockdown | GSM180334 larvae: 1st instar and 3rd instars | V028 CMEW1 Cl.8+ cell | GSM280088 S2cell (AGO1IP) | S3 male body | SRR010959 Ago3 IP in heterozygotes | SRR014280 Ovary_rep1 w1118_P | V026 1182-4H cell | GSM180331 early embryo (2-6) | V097 CS ovary | S25 1st instar #1 | SRR029032 r2d2 knockdown | SRR014277 Ovary_rep1 NA_P | S8 S2-48,+48, KC-48, +48 mix | OSS7 Drosophila OSS cell small RNA libraries, rep3 | GSM180330 very early embryo (0-1) | S5 imaginal disc | GSM424741 S2 pKF63 transiently transfected | SRR032096 AGO2 IP dcr2 knockdown | V021 ML-DmD21 cell | SRR001344 dcr-2 beta-eliminated | S15 S2 -48 #1 | GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 | SRR001339 WT_females non-beta-eliminated | SRR001348 ago2 oxidized | S21 disk #2 | GSM379051 Armi Mutant | V075 ML-DmBG1-C1 | SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb | SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies | SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb | S30 s2-48 #2 | GSM379062 Squ Mutant | V011 Sg4 | V025 S2R+ cell | S20 2-4day pupae#2 | SRR031696_2152 | SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb | SRR001664 homozygous dcr-2_untreated | GSM379061 Squ Heterozygote | SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 | GSM343287 Drosophila Toll 10b mutant embryos | V067 S2-NP | GSM280082 WT ovaries (18-29nt) | V001 IR- | SRR023399 RNA bound by P19 protein | SRR010955 Aub IP in Ago3 heterozygotes | GSM379060 SpnE Heterozygote | V083 male, one day | SRR001338 IR non-beta-eliminated | SRR031701 Total small RNAs from r2d2 heterozygous flies | SRR029030 dcr-2 knockdown | GSM239052 S2 cells, non beta-eliminated | GSM467730 r2d2 | S28 0-2d pupae | S10 2-6h #1 (8) | GSM239041 fly heads, non beta-eliminated | GSM424739 S2 parental | OSS6 Drosophila OSS cell small RNA libraries, rep2 | GSM280083 dcr-2-/- ovaries (18-29nt) | GSM379059 | SRR029028 untreated (mock) | SRR032093 ago1 knockdown | V024 kc167 cell | V033 CMEW1 Cl.8+ cell | GSM280085 WT testes (18-24nt) | GSM180329 adult bodies (female bodies, male bodies) | SRR001346 ago2 beta-eliminated | V084 female, one day | S17 3rd inster #1 | SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 | GSM379057 Krimp Mutant | GSM379066 Zuc Mutant | SRR010953 Aub heterozygotes, oxidized | V064 ago2[414], ovary, AGO1IP | S35 KC+48 #2 |
...................................................TGGCACTTCAATTGGGCTGACTTTGCC...................................................................................... | 27 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
..............................................................................................................................ATTACGATCGACACAAGCGA.................. | 20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |