Page generated on Fri Oct 15 12:01:22 2010

dme-mir-252



dme-mir-252

View dme-mir-252 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-252	142	990625			965030	679	24697		219	22	965030	24697

AGATGTACAGTGTGCCGCCTACTTACCAAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAGTTGCCCAGCAAAAGAATACACGCTGC
.............................((.((((((..((((((((.(.((.(((((((....(((((....)).)))..))))))).)).).))))))))..)))))))).............................-34.60
.......(((((((.((((.(((.....)))..(((((..((((((((.(.((.(((((((....(((((....)).)))..))))))).)).).))))))))..)))))))))..((((...)))).......))))))).-46.60
Sense strand

	Size	Blast	Total	S29 male head #1	S32 s2+48 #2	SRR029633 total small RNAs from hen1 homozygous flies	S31 s2+48 #1	SRR031696_2152	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S22 female head #1	SRR031701 Total small RNAs from r2d2 heterozygous flies	S30 s2-48 #2	SRR031699 Total small RNAs from dcr-2 homozygous flies	S24 male body #2	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S28 0-2d pupae	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR031692 Total small RNAs from Oregon R	S27 0-1d Pupae (w)	V076 ML-DmBG3-C2	S2 female head	SRR031693_4	S15 S2 -48 #1	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	V067 S2-NP	SRR001345 ago2 non-beta-eliminated	SRR001338 IR non-beta-eliminated	V090 CS  male total RNA	V010 MLDmD20c5	S19 2-4day pupae #1	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V026 1182-4H cell	S9 0-1h #3 (7)	S1 male head	V082 embryo 14-24hr	S23 female body #2	SRR001343 dcr-2 non-beta-eliminated	V008 S2-DRSC	SRR001349 heterozygous dcr-2_untreated	S8 S2-48,+48, KC-48, +48 mix	GSM467729 WT	SRR001664 homozygous dcr-2_untreated	V001 IR-	GSM180328 adult heads (female heads, male heads)	GSM239050 fly heads, beta-eliminated	V083 male, one day	V002 IR+	SRR001347 ago2 untreated	S12 6-10h #1 (10)	S13 6-10h #2 (11)	V025 S2R+ cell	V020 S2R+ cell	S7 12-24hr embryo	S35 KC+48 #2	S3 male body	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR001344 dcr-2 beta-eliminated	GSM467730 r2d2	S17 3rd inster #1	S21 disk #2	S18 3rd inster #2	GSM467731 loq	S5 imaginal disc	V011 Sg4	V084 female, one day	S4 female body	S34 KC+48 #1	SRR032095 AGO1 IP dcr2 knockdown	GSM239051 S2 cells, beta-eliminated	S33 KC-48 #2	S20 2-4day pupae#2	V098 dcr-2[L811fsX] ovary	SRR001348 ago2 oxidized	GSM280085 WT testes (18-24nt)	GSM180337 tissue culture cells (S2 only)	V021 ML-DmD21 cell	S10 2-6h #1 (8)	GSM239041 fly heads, non beta-eliminated	V063 CS,ovary,AGO1IP	GSM180333 late embryo (12-24)	GSM180329 adult bodies (female bodies, male bodies)	SRR029028 untreated (mock)	GSM239052 S2 cells, non beta-eliminated	V097 CS ovary	S25 1st instar #1	GSM280088 S2cell (AGO1IP)	S26 1st instar #2	SRR001337 WT_females beta-eliminated	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR032096 AGO2 IP dcr2 knockdown	V065 dcr-2[L811fsX], ovary, AGO1IP	V066 r2d2[1], ovary, AGO1IP	S14 0-1hr #1 (A)	SRR029031 loqs-ORF knockdown	SRR032092 mock oxidized	GSM379059	V088 r2d2[1] ovary total RNA	V064 ago2[414], ovary, AGO1IP	GSM246084 D. melanogaster adult male heads 454	V081 embryo 2-6hr	SRR029030 dcr-2 knockdown	SRR032093 ago1 knockdown	GSM180335 imaginal discs	SRR029033 lacZ knockdown	SRR001346 ago2 beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	SRR029032 r2d2 knockdown	GSM379051 Armi Mutant	V089 ago2[414] ovary total RNA	GSM180332 mid embryo (6-10)	S16 KC -48 #1	GSM280087 S2cell (AGO2IP)	GSM379065 Zuc Heterozygote	SRR029029 dcr-1 knockdown	S11 2-6h #2 (9)	GSM379057 Krimp Mutant	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379055 Flam Mutant	SRR014277 Ovary_rep1 NA_P	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR032094 ago2 knockdown	GSM280084 loqs-/- ovaries (18-29nt)	GSM379050 Armi Heterozygote	SRR014280 Ovary_rep1 w1118_P	SRR014282 Ovary_rep1 wK_P	V009 CMEL1	GSM424740 S2 pKF63 stably transfected	SRR001340 IR beta-eliminated	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379066 Zuc Mutant	V033 CMEW1 Cl.8+ cell	GSM379054 Flam Heterozygote	SRR014275 Ovary_rep1 LK_P	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM379067 SpnE Mutant	GSM379056 Krimp Heterozygote	GSM343287 Drosophila Toll 10b mutant embryos	GSM379060 SpnE Heterozygote	GSM379064 Vasa Mutant	GSM379062 Squ Mutant	GSM379058	SRR001342 WT_males beta-eliminated	GSM379061 Squ Heterozygote	SRR023197 RNA Library from S2 control cells	GSM379052 Aub Heterozygote	GSM379063 Vasa Heterozygote	V024 kc167 cell	SRR014273 Ovary_rep1_Har_P	SRR010960 wt, oxidized	GSM180330 very early embryo (0-1)	SRR010951 Ago3 heterozygotes, oxidized	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM280082 WT ovaries (18-29nt)	SRR010954 Aub trans-heterozygotes, oxidized	OSS6 Drosophila OSS cell small RNA libraries, rep2	V028 CMEW1 Cl.8+ cell	V075 ML-DmBG1-C1	V018 Kc167 cell	V019 GM2 cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR010953 Aub heterozygotes, oxidized	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR010956 Piwi IP in Ago3 heterozygotes	GSM180331 early embryo (2-6)	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010959 Ago3 IP in heterozygotes	GSM379053 Aub Mutant	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR010955 Aub IP in Ago3 heterozygotes	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	SRR023402 total RNA extracted from NLS-P19 cells	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM424741 S2 pKF63 transiently transfected	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental
.....................................TCCTAAGTACTAGTGCCGCAGGA..................................................................................	23	1	8	0	0	0	0	3	0	0	0	0	0	1	0	0	0	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCCTAAGTACTAGTGCCGCAGGAGT................................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCCTAAGTACTAGTGCCGCA.....................................................................................	20	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCCTAAGTACTAGTGCCGCAGGAG.................................................................................	24	1	17	0	0	2	0	0	0	0	0	0	0	1	0	3	0	6	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CCTAAGTACTAGTGCCGCAGGAGT................................................................................	24	1	31	0	0	1	0	6	2	0	0	0	0	8	0	4	0	1	1	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CCTAAGTACTAGTGCCGCA.....................................................................................	19	1	3	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CCTAAGTACTAGTGCCGCAGGA..................................................................................	22	1	20	0	0	2	0	2	0	0	0	0	0	3	0	3	0	3	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CCTAAGTACTAGTGCCGCAGGAGTT...............................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CCTAAGTACTAGTGCCGCAGG...................................................................................	21	1	4	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CCTAAGTACTAGTGCCGCAGGAG.................................................................................	23	1	261	0	0	25	2	26	8	6	2	6	0	36	0	30	0	29	5	9	0	2	0	23	0	16	2	2	1	0	1	0	1	2	0	0	1	1	0	0	2	0	0	3	0	3	0	2	1	4	0	0	1	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	701470	127511	60533	27887	39999	24101	17534	13332	19677	11817	16917	15078	18770	15127	18222	13442	10963	12280	16203	15292	11091	9270	9763	9048	10675	8239	4855	7382	6367	6308	6515	6419	5054	4506	5777	4453	3813	4126	3490	4050	746	2397	3909	3100	3364	3390	3292	2114	3094	2940	2590	2045	2227	2002	1819	1651	1651	1691	360	1643	1450	1364	95	1297	1213	1438	1232	1171	852	612	906	906	1021	603	713	657	758	715	628	690	636	483	452	401	485	447	399	403	341	339	234	357	349	265	228	293	249	270	261	216	250	171	162	165	150	139	163	137	155	159	160	98	112	98	82	86	88	89	81	79	69	77	66	54	55	65	62	65	41	50	20	49	46	43	34	44	44	37	39	37	2	29	24	31	24	20	25	24	22	22	20	22	15	17	16	13	18	4	15	14	12	12	10	4	7	12	11	8	11	10	7	7	7	4	3	2	1	2	0	1	0	1	0	0	0	0	0	0	0	0
.......................................CTAAGTACTAGTGCCGCAGGAGTTAGG............................................................................	27	1	19	0	0	0	2	0	2	0	0	0	0	0	0	1	0	0	6	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CTAAGTACTAGTGCCGCAGGAGTTAGGT...........................................................................	28	1	10	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................CCTGCTGCCCAAGTGCTTATTAA...................................	23	1	164	1	37	5	28	12	4	1	3	2	15	4	1	0	2	3	0	2	2	0	3	0	7	1	0	0	0	0	0	0	0	0	9	0	0	0	1	0	0	3	1	0	0	1	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	1	1	0	0	1	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................CTGCTGCCCAAGTGCTTATTAA...................................	22	1	60	2	17	0	15	0	1	3	1	0	7	1	0	1	0	0	0	4	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CTGCTGCCCAAGTGCTTATT.....................................	20	1	393	9	21	43	24	41	22	45	4	16	8	17	3	29	0	9	8	9	4	1	4	23	10	11	1	1	3	0	0	1	0	1	0	2	0	0	3	5	1	2	4	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CTGCTGCCCAAGTGCTTAT......................................	19	1	70	0	1	43	0	10	1	0	1	2	2	2	2	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CTGCTGCCCAAGTGCTTATTAAA..................................	23	1	16	6	3	0	2	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CTGCTGCCCAAGTGCTTA.......................................	18	1	14	0	1	5	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGCTGCCCAAGTGCTTATTAAA..................................	22	1	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGCTGCCCAAGTGCTTATTA....................................	20	1	17	1	1	1	0	1	0	1	0	1	0	0	0	2	1	1	2	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGCTGCCCAAGTGCTTATT.....................................	19	1	10	0	1	0	0	2	0	1	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGCTGCCCAAGTGCTTAT......................................	18	1	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGCTGCCCAAGTGCTTATTAA...................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTGCCCAAGTGCTTATT.....................................	18	1	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GCTGCCCAAGTGCTTATTA....................................	19	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CTGCCCAAGTGCTTATTA....................................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TGCCCAAGTGCTTATTAAA..................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	S29 male head #1	S32 s2+48 #2	SRR029633 total small RNAs from hen1 homozygous flies	S31 s2+48 #1	SRR031696_2152	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S22 female head #1	SRR031701 Total small RNAs from r2d2 heterozygous flies	S30 s2-48 #2	SRR031699 Total small RNAs from dcr-2 homozygous flies	S24 male body #2	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S28 0-2d pupae	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR031692 Total small RNAs from Oregon R	S27 0-1d Pupae (w)	V076 ML-DmBG3-C2	S2 female head	SRR031693_4	S15 S2 -48 #1	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	V067 S2-NP	SRR001345 ago2 non-beta-eliminated	SRR001338 IR non-beta-eliminated	V090 CS  male total RNA	V010 MLDmD20c5	S19 2-4day pupae #1	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V026 1182-4H cell	S9 0-1h #3 (7)	S1 male head	V082 embryo 14-24hr	S23 female body #2	SRR001343 dcr-2 non-beta-eliminated	V008 S2-DRSC	SRR001349 heterozygous dcr-2_untreated	S8 S2-48,+48, KC-48, +48 mix	GSM467729 WT	SRR001664 homozygous dcr-2_untreated	V001 IR-	GSM180328 adult heads (female heads, male heads)	GSM239050 fly heads, beta-eliminated	V083 male, one day	V002 IR+	SRR001347 ago2 untreated	S12 6-10h #1 (10)	S13 6-10h #2 (11)	V025 S2R+ cell	V020 S2R+ cell	S7 12-24hr embryo	S35 KC+48 #2	S3 male body	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR001344 dcr-2 beta-eliminated	GSM467730 r2d2	S17 3rd inster #1	S21 disk #2	S18 3rd inster #2	GSM467731 loq	S5 imaginal disc	V011 Sg4	V084 female, one day	S4 female body	S34 KC+48 #1	SRR032095 AGO1 IP dcr2 knockdown	GSM239051 S2 cells, beta-eliminated	S33 KC-48 #2	S20 2-4day pupae#2	V098 dcr-2[L811fsX] ovary	SRR001348 ago2 oxidized	GSM280085 WT testes (18-24nt)	GSM180337 tissue culture cells (S2 only)	V021 ML-DmD21 cell	S10 2-6h #1 (8)	GSM239041 fly heads, non beta-eliminated	V063 CS,ovary,AGO1IP	GSM180333 late embryo (12-24)	GSM180329 adult bodies (female bodies, male bodies)	SRR029028 untreated (mock)	GSM239052 S2 cells, non beta-eliminated	V097 CS ovary	S25 1st instar #1	GSM280088 S2cell (AGO1IP)	S26 1st instar #2	SRR001337 WT_females beta-eliminated	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR032096 AGO2 IP dcr2 knockdown	V065 dcr-2[L811fsX], ovary, AGO1IP	V066 r2d2[1], ovary, AGO1IP	S14 0-1hr #1 (A)	SRR029031 loqs-ORF knockdown	SRR032092 mock oxidized	GSM379059	V088 r2d2[1] ovary total RNA	V064 ago2[414], ovary, AGO1IP	GSM246084 D. melanogaster adult male heads 454	V081 embryo 2-6hr	SRR029030 dcr-2 knockdown	SRR032093 ago1 knockdown	GSM180335 imaginal discs	SRR029033 lacZ knockdown	SRR001346 ago2 beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	SRR029032 r2d2 knockdown	GSM379051 Armi Mutant	V089 ago2[414] ovary total RNA	GSM180332 mid embryo (6-10)	S16 KC -48 #1	GSM280087 S2cell (AGO2IP)	GSM379065 Zuc Heterozygote	SRR029029 dcr-1 knockdown	S11 2-6h #2 (9)	GSM379057 Krimp Mutant	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379055 Flam Mutant	SRR014277 Ovary_rep1 NA_P	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR032094 ago2 knockdown	GSM280084 loqs-/- ovaries (18-29nt)	GSM379050 Armi Heterozygote	SRR014280 Ovary_rep1 w1118_P	SRR014282 Ovary_rep1 wK_P	V009 CMEL1	GSM424740 S2 pKF63 stably transfected	SRR001340 IR beta-eliminated	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379066 Zuc Mutant	V033 CMEW1 Cl.8+ cell	GSM379054 Flam Heterozygote	SRR014275 Ovary_rep1 LK_P	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM379067 SpnE Mutant	GSM379056 Krimp Heterozygote	GSM343287 Drosophila Toll 10b mutant embryos	GSM379060 SpnE Heterozygote	GSM379064 Vasa Mutant	GSM379062 Squ Mutant	GSM379058	SRR001342 WT_males beta-eliminated	GSM379061 Squ Heterozygote	SRR023197 RNA Library from S2 control cells	GSM379052 Aub Heterozygote	GSM379063 Vasa Heterozygote	V024 kc167 cell	SRR014273 Ovary_rep1_Har_P	SRR010960 wt, oxidized	GSM180330 very early embryo (0-1)	SRR010951 Ago3 heterozygotes, oxidized	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM280082 WT ovaries (18-29nt)	SRR010954 Aub trans-heterozygotes, oxidized	OSS6 Drosophila OSS cell small RNA libraries, rep2	V028 CMEW1 Cl.8+ cell	V075 ML-DmBG1-C1	V018 Kc167 cell	V019 GM2 cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR010953 Aub heterozygotes, oxidized	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR010956 Piwi IP in Ago3 heterozygotes	GSM180331 early embryo (2-6)	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010959 Ago3 IP in heterozygotes	GSM379053 Aub Mutant	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR010955 Aub IP in Ago3 heterozygotes	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	SRR023402 total RNA extracted from NLS-P19 cells	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM424741 S2 pKF63 transiently transfected	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental