Page generated on Fri Oct 15 12:01:17 2010

dme-mir-263a



dme-mir-263a

View dme-mir-263a on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-263a	143	2062860	5	3	2048803		13821	1	237	17	2048803	13821

GTAAATATACCATCTAATGGTATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACAACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAAACATCCAAAATGAAACGAAATCCG
............................(((((.(((.((..(((.(((((..(((..(((((((...............))))))))))..))))).)))..)).)))))))).............................-36.26
....(((((((((...)))))))))...(((((.(((.((..(((.(((((..(((..(((((((...............))))))))))..))))).)))..)).)))))))).............................-44.06
Sense strand

	Size	Blast	Total	V098 dcr-2[L811fsX] ovary	V097 CS ovary	V090 CS  male total RNA	V065 dcr-2[L811fsX], ovary, AGO1IP	V082 embryo 14-24hr	V063 CS,ovary,AGO1IP	V064 ago2[414], ovary, AGO1IP	V083 male, one day	V089 ago2[414] ovary total RNA	V081 embryo 2-6hr	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V066 r2d2[1], ovary, AGO1IP	SRR031703 Total small RNAs from r2d2 homozygous flies	V084 female, one day	SRR014275 Ovary_rep1 LK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR014280 Ovary_rep1 w1118_P	SRR031696_2152	SRR014277 Ovary_rep1 NA_P	V001 IR-	GSM379065 Zuc Heterozygote	V088 r2d2[1] ovary total RNA	SRR014273 Ovary_rep1_Har_P	SRR031692 Total small RNAs from Oregon R	GSM379061 Squ Heterozygote	GSM379066 Zuc Mutant	SRR014282 Ovary_rep1 wK_P	V002 IR+	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM379060 SpnE Heterozygote	GSM379057 Krimp Mutant	GSM379064 Vasa Mutant	GSM379051 Armi Mutant	SRR023197 RNA Library from S2 control cells	GSM379063 Vasa Heterozygote	GSM379058	S29 male head #1	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S28 0-2d pupae	GSM379056 Krimp Heterozygote	GSM379062 Squ Mutant	GSM379054 Flam Heterozygote	GSM379050 Armi Heterozygote	SRR001345 ago2 non-beta-eliminated	GSM379052 Aub Heterozygote	SRR001338 IR non-beta-eliminated	GSM467729 WT	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR031693_4	GSM379053 Aub Mutant	S19 2-4day pupae #1	S24 male body #2	S27 0-1d Pupae (w)	GSM467730 r2d2	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM280082 WT ovaries (18-29nt)	S12 6-10h #1 (10)	S13 6-10h #2 (11)	S22 female head #1	SRR032095 AGO1 IP dcr2 knockdown	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM280084 loqs-/- ovaries (18-29nt)	S23 female body #2	GSM379067 SpnE Mutant	GSM379059	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379055 Flam Mutant	SRR001343 dcr-2 non-beta-eliminated	SRR010959 Ago3 IP in heterozygotes	SRR010955 Aub IP in Ago3 heterozygotes	S17 3rd inster #1	SRR001344 dcr-2 beta-eliminated	S9 0-1h #3 (7)	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR010954 Aub trans-heterozygotes, oxidized	V008 S2-DRSC	SRR010956 Piwi IP in Ago3 heterozygotes	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR010960 wt, oxidized	SRR029028 untreated (mock)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S18 3rd inster #2	SRR010953 Aub heterozygotes, oxidized	SRR001664 homozygous dcr-2_untreated	S21 disk #2	SRR001347 ago2 untreated	S2 female head	SRR029031 loqs-ORF knockdown	S20 2-4day pupae#2	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR032092 mock oxidized	V067 S2-NP	GSM467731 loq	SRR023400 total RNA extracted from P19 cells	S7 12-24hr embryo	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR001349 heterozygous dcr-2_untreated	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM280088 S2cell (AGO1IP)	SRR010951 Ago3 heterozygotes, oxidized	S10 2-6h #1 (8)	S3 male body	SRR029030 dcr-2 knockdown	S4 female body	SRR029033 lacZ knockdown	GSM180328 adult heads (female heads, male heads)	GSM180333 late embryo (12-24)	S5 imaginal disc	SRR032093 ago1 knockdown	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S1 male head	SRR029032 r2d2 knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	V076 ML-DmBG3-C2	S35 KC+48 #2	S32 s2+48 #2	SRR001337 WT_females beta-eliminated	GSM280085 WT testes (18-24nt)	GSM180329 adult bodies (female bodies, male bodies)	S25 1st instar #1	GSM180334 larvae: 1st instar and 3rd instars	SRR023399 RNA bound by P19 protein	GSM280087 S2cell (AGO2IP)	GSM180332 mid embryo (6-10)	GSM343287 Drosophila Toll 10b mutant embryos	SRR029029 dcr-1 knockdown	SRR032094 ago2 knockdown	S31 s2+48 #1	S34 KC+48 #1	S11 2-6h #2 (9)	GSM239052 S2 cells, non beta-eliminated	GSM180335 imaginal discs	S30 s2-48 #2	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR001346 ago2 beta-eliminated	SRR032096 AGO2 IP dcr2 knockdown	GSM239041 fly heads, non beta-eliminated	OSS8 Drosophila OSS cell small RNA libraries, rep4	V025 S2R+ cell	GSM424740 S2 pKF63 stably transfected	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM239050 fly heads, beta-eliminated	SRR001340 IR beta-eliminated	GSM424739 S2 parental	V011 Sg4	S26 1st instar #2	S15 S2 -48 #1	V020 S2R+ cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM239051 S2 cells, beta-eliminated	SRR001348 ago2 oxidized	S14 0-1hr #1 (A)	S33 KC-48 #2	GSM246084 D. melanogaster adult male heads 454	SRR023402 total RNA extracted from NLS-P19 cells	GSM180331 early embryo (2-6)	S8 S2-48,+48, KC-48, +48 mix	V010 MLDmD20c5	V033 CMEW1 Cl.8+ cell	SRR001342 WT_males beta-eliminated	V021 ML-DmD21 cell	V009 CMEL1	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM180337 tissue culture cells (S2 only)	V019 GM2 cell	V028 CMEW1 Cl.8+ cell	S16 KC -48 #1	V075 ML-DmBG1-C1	GSM180330 very early embryo (0-1)	V024 kc167 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM280086 WT ovaries (AGO2IP)	V018 Kc167 cell	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	V026 1182-4H cell	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
......................................GTTAATGGCACTGGAAGAATTCAC.................................................................................	24	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TTAATGGCACTGGAAGAATTCACG................................................................................	24	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TAATGGCACTGGAAGAATTCAC.................................................................................	22	1	5	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TAATGGCACTGGAAGAATTCACG................................................................................	23	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TAATGGCACTGGAAGAATTCACGGGG.............................................................................	26	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TAATGGCACTGGAAGAATTCA..................................................................................	21	1	3	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TAATGGCACTGGAAGAATTCACGG...............................................................................	24	1	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TAATGGCACTGGAAGAATTCACGGG..............................................................................	25	1	2	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AATGGCACTGGAAGAATTC...................................................................................	19	1	15428	1370	622	2898	470	83	441	448	930	159	30	43	41	48	801	556	144	45	99	2478	17	488	38	378	73	8	23	57	104	203	17	12	21	15	148	10	34	18	22	87	15	13	26	157	150	9	49	3	10	25	71	14	93	83	41	38	16	0	10	4	79	44	16	0	0	11	83	11	0	34	2	5	46	2	14	21	1	0	6	40	1	42	42	128	47	0	22	14	14	0	0	100	28	1	35	1	14	0	2	0	7	11	13	1	2	15	10	13	5	0	2	11	2	5	0	0	0	3	13	4	14	0	6	0	0	5	1	0	0	0	0	13	0	0	0	6	1	0	0	0	0	0	4	0	20	2	1	0	0	0	0	2	0	2	0	2	0	1	4	0	0	2	0	0	0	1	0	0	0	6	1	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AATGGCACTGGAAGAATTCACGGGGTAATTT.......................................................................	31	1	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AATGGCACTGGAAGAATTCACGGGGTAATT........................................................................	30	1	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................CGTGATCTCTTAGTGGCA...........................................	18	1	18	0	0	3	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CGTGATCTCTTAGTGGCATC.........................................	20	1	73	4	0	3	0	7	1	1	1	3	0	1	3	1	0	0	0	0	4	3	2	2	3	0	0	2	0	4	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	1	2	0	0	0	0	0	0	0	0	4	0	0	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CGTGATCTCTTAGTGGCATCTAT......................................	23	1	20	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	2	0	0	0	0	0	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CGTGATCTCTTAGTGGCAT..........................................	19	1	30	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	10	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	1	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CGTGATCTCTTAGTGGCATCT........................................	21	1	2301	110	108	31	111	198	82	105	18	71	141	44	43	58	28	17	40	16	17	18	45	10	19	12	14	108	35	97	12	8	6	20	24	67	11	8	24	21	11	0	18	13	0	6	3	18	15	15	1	8	0	5	12	19	33	2	6	9	5	4	15	3	11	24	16	4	10	8	4	4	3	5	1	43	4	1	0	5	1	0	6	2	2	0	3	0	8	0	2	1	3	0	2	3	3	1	1	2	9	0	2	4	0	3	1	2	0	4	0	7	0	24	1	0	0	0	2	0	13	1	0	0	2	0	2	0	2	0	1	0	0	1	1	1	0	0	1	0	12	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GTGATCTCTTAGTGGCATCTA.......................................	21	1	49	4	3	0	0	3	0	0	0	0	1	0	0	0	0	0	1	1	0	1	0	1	0	2	0	2	0	3	0	1	1	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	3	0	0	0	2	0	0	0	0	1	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GTGATCTCTTAGTGGCAT..........................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GTGATCTCTTAGTGGCATC.........................................	19	1	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GTGATCTCTTAGTGGCATCT........................................	20	1	4	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TGATCTCTTAGTGGCATCTA.......................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TGATCTCTTAGTGGCATCT........................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................ATCTCTTAGTGGCATCTA.......................................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TGGTGCGAGAATAAAACATCCAAAATGA...........	28	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V098 dcr-2[L811fsX] ovary	V097 CS ovary	V090 CS  male total RNA	V065 dcr-2[L811fsX], ovary, AGO1IP	V082 embryo 14-24hr	V063 CS,ovary,AGO1IP	V064 ago2[414], ovary, AGO1IP	V083 male, one day	V089 ago2[414] ovary total RNA	V081 embryo 2-6hr	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V066 r2d2[1], ovary, AGO1IP	SRR031703 Total small RNAs from r2d2 homozygous flies	V084 female, one day	SRR014275 Ovary_rep1 LK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR014280 Ovary_rep1 w1118_P	SRR031696_2152	SRR014277 Ovary_rep1 NA_P	V001 IR-	GSM379065 Zuc Heterozygote	V088 r2d2[1] ovary total RNA	SRR014273 Ovary_rep1_Har_P	SRR031692 Total small RNAs from Oregon R	GSM379061 Squ Heterozygote	GSM379066 Zuc Mutant	SRR014282 Ovary_rep1 wK_P	V002 IR+	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM379060 SpnE Heterozygote	GSM379057 Krimp Mutant	GSM379064 Vasa Mutant	GSM379051 Armi Mutant	SRR023197 RNA Library from S2 control cells	GSM379063 Vasa Heterozygote	GSM379058	S29 male head #1	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S28 0-2d pupae	GSM379056 Krimp Heterozygote	GSM379062 Squ Mutant	GSM379054 Flam Heterozygote	GSM379050 Armi Heterozygote	SRR001345 ago2 non-beta-eliminated	GSM379052 Aub Heterozygote	SRR001338 IR non-beta-eliminated	GSM467729 WT	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR031693_4	GSM379053 Aub Mutant	S19 2-4day pupae #1	S24 male body #2	S27 0-1d Pupae (w)	GSM467730 r2d2	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM280082 WT ovaries (18-29nt)	S12 6-10h #1 (10)	S13 6-10h #2 (11)	S22 female head #1	SRR032095 AGO1 IP dcr2 knockdown	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM280084 loqs-/- ovaries (18-29nt)	S23 female body #2	GSM379067 SpnE Mutant	GSM379059	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379055 Flam Mutant	SRR001343 dcr-2 non-beta-eliminated	SRR010959 Ago3 IP in heterozygotes	SRR010955 Aub IP in Ago3 heterozygotes	S17 3rd inster #1	SRR001344 dcr-2 beta-eliminated	S9 0-1h #3 (7)	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR010954 Aub trans-heterozygotes, oxidized	V008 S2-DRSC	SRR010956 Piwi IP in Ago3 heterozygotes	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR010960 wt, oxidized	SRR029028 untreated (mock)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S18 3rd inster #2	SRR010953 Aub heterozygotes, oxidized	SRR001664 homozygous dcr-2_untreated	S21 disk #2	SRR001347 ago2 untreated	S2 female head	SRR029031 loqs-ORF knockdown	S20 2-4day pupae#2	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR032092 mock oxidized	V067 S2-NP	GSM467731 loq	SRR023400 total RNA extracted from P19 cells	S7 12-24hr embryo	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR001349 heterozygous dcr-2_untreated	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM280088 S2cell (AGO1IP)	SRR010951 Ago3 heterozygotes, oxidized	S10 2-6h #1 (8)	S3 male body	SRR029030 dcr-2 knockdown	S4 female body	SRR029033 lacZ knockdown	GSM180328 adult heads (female heads, male heads)	GSM180333 late embryo (12-24)	S5 imaginal disc	SRR032093 ago1 knockdown	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S1 male head	SRR029032 r2d2 knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	V076 ML-DmBG3-C2	S35 KC+48 #2	S32 s2+48 #2	SRR001337 WT_females beta-eliminated	GSM280085 WT testes (18-24nt)	GSM180329 adult bodies (female bodies, male bodies)	S25 1st instar #1	GSM180334 larvae: 1st instar and 3rd instars	SRR023399 RNA bound by P19 protein	GSM280087 S2cell (AGO2IP)	GSM180332 mid embryo (6-10)	GSM343287 Drosophila Toll 10b mutant embryos	SRR029029 dcr-1 knockdown	SRR032094 ago2 knockdown	S31 s2+48 #1	S34 KC+48 #1	S11 2-6h #2 (9)	GSM239052 S2 cells, non beta-eliminated	GSM180335 imaginal discs	S30 s2-48 #2	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR001346 ago2 beta-eliminated	SRR032096 AGO2 IP dcr2 knockdown	GSM239041 fly heads, non beta-eliminated	OSS8 Drosophila OSS cell small RNA libraries, rep4	V025 S2R+ cell	GSM424740 S2 pKF63 stably transfected	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM239050 fly heads, beta-eliminated	SRR001340 IR beta-eliminated	GSM424739 S2 parental	V011 Sg4	S26 1st instar #2	S15 S2 -48 #1	V020 S2R+ cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM239051 S2 cells, beta-eliminated	SRR001348 ago2 oxidized	S14 0-1hr #1 (A)	S33 KC-48 #2	GSM246084 D. melanogaster adult male heads 454	SRR023402 total RNA extracted from NLS-P19 cells	GSM180331 early embryo (2-6)	S8 S2-48,+48, KC-48, +48 mix	V010 MLDmD20c5	V033 CMEW1 Cl.8+ cell	SRR001342 WT_males beta-eliminated	V021 ML-DmD21 cell	V009 CMEL1	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM180337 tissue culture cells (S2 only)	V019 GM2 cell	V028 CMEW1 Cl.8+ cell	S16 KC -48 #1	V075 ML-DmBG1-C1	GSM180330 very early embryo (0-1)	V024 kc167 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM280086 WT ovaries (AGO2IP)	V018 Kc167 cell	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	V026 1182-4H cell	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
..................GGTATATAGATCTCGGCACAGTT......................................................................................................	23	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TATAGATCTCGGCACAGTTA.....................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTTTATACAACCCGTGATCT.....................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TTAGTGGCATCTATGGTGCGAGAATAA.........................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0