Page generated on Fri Oct 15 12:01:11 2010

dme-mir-276a




dme-mir-276a

View dme-mir-276a on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-276a1476198890162183798401490461981521837984014904


AAACGCGCTGCCAAGATATTTTTTACCTGGTTTTTGCCATCAGCGAGGTATAGAGTTCCTACGTTCATTATAAACTCGTAGGAACTTCATACCGTGCTCTTGGAAGACCAAAAAACAACCAAGTGAATGCAAAAATCCCAAAAAGTA
...........................((((((...(((..((((.(((((..((((((((((.............))))))))))..))))).))))..))).)))))).....................................-38.62
................((((((((....(((((((((....((((.(((((..((((((((((.............))))))))))..))))).))))(((((..(.........)..))))).....)))))))))..))))))))-41.52
Sense strand
                                                                                                                                                   SizeBlastTotalSRR031696_2152 SRR031703 Total small RNAs from r2d2 homozygous flies SRR029633 total small RNAs from hen1 homozygous flies S29 male head #1V098 dcr-2[L811fsX] ovarySRR031692 Total small RNAs from Oregon R V090 CS  male total RNA  V097 CS ovarySRR031701 Total small RNAs from r2d2 heterozygous flies SRR001345 ago2 non-beta-eliminated SRR001338 IR non-beta-eliminated SRR001349 heterozygous dcr-2_untreated V083 male, one daySRR031699 Total small RNAs from dcr-2 homozygous flies SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR001347 ago2 untreated SRR001664 homozygous dcr-2_untreated V084 female, one dayV082 embryo 14-24hrS24 male body #2S35 KC+48 #2S22 female head #1V009 CMEL1S32 s2+48 #2V008 S2-DRSCV026 1182-4H cellS28 0-2d pupaeS34 KC+48 #1S33 KC-48 #2V020 S2R+ cellS31 s2+48 #1V010 MLDmD20c5V024 kc167 cellV018 Kc167 cellV033 CMEW1 Cl.8+ cellSRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated V088 r2d2[1] ovary total RNA  S2 female headV065 dcr-2[L811fsX], ovary, AGO1IPSRR001343 dcr-2 non-beta-eliminated V025 S2R+ cellS27 0-1d Pupae (w)V089 ago2[414] ovary total RNA  V063 CS,ovary,AGO1IPSRR014273 Ovary_rep1_Har_P SRR014275 Ovary_rep1 LK_P S19 2-4day pupae #1GSM280087 S2cell (AGO2IP) SRR001344 dcr-2 beta-eliminated V028 CMEW1 Cl.8+ cellS23 female body #2S9 0-1h #3 (7)SRR014277 Ovary_rep1 NA_P V076 ML-DmBG3-C2SRR032096 AGO2 IP dcr2 knockdownV064 ago2[414], ovary, AGO1IPV067 S2-NPS1 male headS21 disk #2GSM379057 Krimp Mutant GSM379065 Zuc Heterozygote SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM379059 S16 KC -48 #1GSM379063 Vasa Heterozygote GSM379051 Armi Mutant SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 GSM379053 Aub Mutant S5 imaginal discGSM379064 Vasa Mutant SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM379056 Krimp Heterozygote SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies V075 ML-DmBG1-C1S30 s2-48 #2V021 ML-DmD21 cellV002 IR+S15 S2 -48 #1GSM379061 Squ Heterozygote GSM379050 Armi Heterozygote GSM379052 Aub Heterozygote SRR029028 untreated (mock) GSM379054 Flam Heterozygote SRR031693_4 GSM379066 Zuc Mutant S12 6-10h #1 (10)S13 6-10h #2 (11)S18 3rd inster #2GSM280084 loqs-/- ovaries (18-29nt) V001 IR-V011 Sg4SRR032093 ago1 knockdown S3 male bodyS17 3rd inster #1OSS6 Drosophila OSS cell small RNA libraries, rep2 GSM379060 SpnE Heterozygote GSM280088 S2cell (AGO1IP) SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies OSS2 Drosophila OSS cell small RNA libraries, rep1 GSM379058 SRR029031 loqs-ORF knockdown SRR032095 AGO1 IP dcr2 knockdown V066 r2d2[1], ovary, AGO1IPSRR031704 2-O-methylated small RNAs from r2d2 homozygous flies GSM379062 Squ Mutant GSM424739 S2 parental GSM239041 fly heads, non beta-eliminated GSM180328 adult heads (female heads, male heads) SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM379055 Flam Mutant V019 GM2 cellSRR001337 WT_females beta-eliminated S20 2-4day pupae#2SRR014280 Ovary_rep1 w1118_P S8 S2-48,+48, KC-48, +48 mixOSS7 Drosophila OSS cell small RNA libraries, rep3 GSM424740 S2 pKF63 stably transfected GSM379067 SpnE Mutant S4 female bodyOSS8 Drosophila OSS cell small RNA libraries, rep4 SRR029030 dcr-2 knockdown SRR001348 ago2 oxidized GSM280083 dcr-2-/- ovaries (18-29nt) V081 embryo 2-6hrS7 12-24hr embryoSRR014282 Ovary_rep1 wK_P SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies GSM239052 S2 cells, non beta-eliminated S10 2-6h #1 (8)SRR029032 r2d2 knockdown GSM246084 D. melanogaster adult male heads 454 SRR029033 lacZ knockdown SRR032094 ago2 knockdown SRR032092 mock oxidized SRR010959 Ago3 IP in heterozygotes GSM467729 WT SRR029029 dcr-1 knockdown GSM280082 WT ovaries (18-29nt) GSM280085 WT testes (18-24nt) SRR001346 ago2 beta-eliminated GSM180335 imaginal discs GSM180329 adult bodies (female bodies, male bodies) SRR010954 Aub trans-heterozygotes, oxidized GSM180333 late embryo (12-24) SRR010955 Aub IP in Ago3 heterozygotes SRR023400 total RNA extracted from P19 cells SRR023197 RNA Library from S2 control cells SRR001340 IR beta-eliminated GSM424741 S2 pKF63 transiently transfected GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day SRR010958 Piwi IP in Ago3 trans-heterozygotes GSM467731 loq GSM467730 r2d2 GSM239050 fly heads, beta-eliminated SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb GSM180334 larvae: 1st instar and 3rd instars SRR010956 Piwi IP in Ago3 heterozygotes SRR010953 Aub heterozygotes, oxidized S25 1st instar #1SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR023399 RNA bound by P19 protein SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM180337 tissue culture cells (S2 only) S26 1st instar #2S11 2-6h #2 (9)GSM180332 mid embryo (6-10) SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb SRR023402 total RNA extracted from NLS-P19 cells SRR001342 WT_males beta-eliminated SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023407 RNA bound by NLS-P19 protein S14 0-1hr #1 (A)GSM343287 Drosophila Toll 10b mutant embryos SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR010960 wt, oxidized GSM239051 S2 cells, beta-eliminated GSM280086 WT ovaries (AGO2IP) GSM180331 early embryo (2-6) SRR010952 Ago3 trans-heterozygotes, oxidized GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM180330 very early embryo (0-1) SRR010951 Ago3 heterozygotes, oxidized GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries
......................................ATCAGCGAGGTATAGAGTTCCTACG....................................................................................25224100020020000120000000000000000000000000010002010000000001000000000100000004000000000110000000000000001000000000000000200000000010000000000000000000000000000000000000000000000000000000000000
......................................ATCAGCGAGGTATAGAGTTCCTAC.....................................................................................2423001010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCAGCGAGGTATAGAGTTCCTA......................................................................................2221000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCAGCGAGGTATAGAGTTCCT.......................................................................................2122001000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCAGCGAGGTATAGAGTTCCTACG....................................................................................24244000060250000000200000000000000000100003030000001030000002200010100000000200000000010001000100000000000000000001100030001000001000000000000000000000000000000000000000000000000000000000000000
.......................................TCAGCGAGGTATAGAGTTCC........................................................................................2023200010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCAGCGAGGTATAGAGTTCCTAC.....................................................................................2325000010000000001100000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CAGCGAGGTATAGAGTTCCT.......................................................................................2023000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
........................................CAGCGAGGTATAGAGTTCCTA......................................................................................21210000010000000010010100000000000000000000000000000000000000000000000000000001000000000010000000200000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CAGCGAGGTATAGAGTTCC........................................................................................1923002000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CAGCGAGGTATAGAGTTCCTACG....................................................................................23228800063001318000015154006140003151012140403000502022320203020013501000311032210022111004095330131000220000111051620010000100030000020002042000000000010000000000000000000000000000000003020000000000000
........................................CAGCGAGGTATAGAGTTCCTAC.....................................................................................22219002011122000321010100000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AGCGAGGTATAGAGTTCCTACGTT..................................................................................24220314439356318981221062621134211328200111282488520151315181119924211281513254229905780217147521005414176131883515715010424005792029300160133224113044530005231010030202030030011030000006101000000000000022391000000010000000000000000000000000
.........................................AGCGAGGTATAGAGTTCC........................................................................................18242072227253858382612221501121159516102049994358541016223083672212462458112530271351207311617824431415721145432331005141832011411000243284380061214807110000021015601411410002100200000010010000000001000781000200000100100000000000100000000
.........................................AGCGAGGTATAGAGTTCCT.......................................................................................1921145134934737322137271406092653091261171711921984462018123154857523514353416285163282120401173152056116311251011443274115612929666313140503017554351730321202833312716521825311312250150005253604291684223151311524132301010186103069042127311203542001200000370300002000010001766000003020000200000000000000000000
.........................................AGCGAGGTATAGAGTTCCTACGTTC.................................................................................252280000000000000000000010400000000000010000000100010000100000000000000000000000000000000000000000020000000000000000000000000100000000000000012000000000000000220000000000000000000000000000000000
.........................................AGCGAGGTATAGAGTTCCTACG....................................................................................22220208142351771968586661803481098156871161573110761527236114774158320187315751357147581197170733095422076206292223240031236111918815810297843949198492384516734283351464218118128077815121326129251871166528462199462408123101143892867817316389827497502066015418215901519410448254455961061385201350664519239102901025610495768328017635136967011707311319508257057470393111494940578154634753863207029729350091456565249892422820236185305125456212589315610656367655345834513241432956699611847556160261885512427587524158393776370723731200323021711575371236398787871775927240134956326582812276751231581436751953811500499940210340450528940294153387728049718132115124536305111372184736833881216200000
.........................................AGCGAGGTATAGAGTTCCTAC.....................................................................................21265837984778225063643000511305117237006720743160761378622694947105860420162983366511310571901801309238315461135461576840176664397706662117372434248068667546441336598536196271883412822564511941591562451413251569027497751487920216851112628205154897596220761170136291021031051379476223182547257113739542892081101448717179189150751311269718437106631584544374403091174994288105216408612302804272200006014039285814001710596834000090401741000000000
.........................................AGCGAGGTATAGAGTTCCTACGTTCATT..............................................................................2811000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................AGCGAGGTATAGAGTTCCTACGTTCAT...............................................................................2713000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AGCGAGGTATAGAGTTCCTACGTTCA................................................................................26112000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000130000000000000000000000000000000000
.........................................AGCGAGGTATAGAGTTCCTACGT...................................................................................232931031016916755859980700300104318233315211973112621850221775122874332755679897231327572211070793163753522642275010299899151290222926125328514619253438462515463914343151219201921638123962572637861312181101212712231303530141410218770827130072021171903122214289052018100000020861077030021000001000000000000000000000
.........................................AGCGAGGTATAGAGTTCCTA......................................................................................202205584514773420246094227492134144412116273682232423283338239696061097806201804326169661254146120177192264253228524106491219911443124717219394442248271631441282918561762682211531446273331115104135264011041017199396572636101645145323262197502154235221521562505274012122411724242111420083052902702000003049261602004000100020000122100010000000000
..........................................GCGAGGTATAGAGTTCCTAC.....................................................................................202116823736148111191322682130241231739381551168202382322370017601172512883301181591152222454305832000222535171213000130504001200214520030212161202113020007110003003001030000071203000000000000000012010100000000000000100200000000000
..........................................GCGAGGTATAGAGTTCCTACGTTC.................................................................................2422000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000
..........................................GCGAGGTATAGAGTTCCTACGT...................................................................................2229440211101140001002010020504010000000010001000000112000000000001000010000100100000000000200200000100005101000000000001000000000000000000000027000000000000000112000000000000000000000000000000000
..........................................GCGAGGTATAGAGTTCCTACGTT..................................................................................23211102001000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000004000000000000000100000000000000000000000000000000000
..........................................GCGAGGTATAGAGTTCCT.......................................................................................18211023483021130021110210010100000000001000000000000000000001020000100000000000004000000000030000000000000200110000000000000000000100000000000001000000000000000001000000000000000000000000000000000
..........................................GCGAGGTATAGAGTTCCTA......................................................................................192250028530500403131010530581309000513020200002320230100111050012012000002000000017020010001080001000110200900000200300000000000210100000000000005000000000000000000000000000000000000000000000000000
..........................................GCGAGGTATAGAGTTCCTACG....................................................................................2123928629430108654924224314045937111658155210451297648848112381499486114684364739259115977157706746914485291112523021626171901272523663025021784153235352522553677421344789329142721501055688569976213784140913402875847957366116675626769301414477215129383041621881929351741738343419119202463651575342161421541675336123141076022263211755434010950886091014130600006870643116400919015113226000013400011011000000
..........................................GCGAGGTATAGAGTTCCTACGTTCA................................................................................2511000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CGAGGTATAGAGTTCCTAC.....................................................................................192641011103001000014100010230000240001001000230000001100010004000000000001010002000001000030000000221000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000
...........................................CGAGGTATAGAGTTCCTACGTT..................................................................................2223000010000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CGAGGTATAGAGTTCCTA......................................................................................18219001000000000000000102020100000000000000010000100000002000002000000000000001000000000010000000300000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
...........................................CGAGGTATAGAGTTCCTACGTTC.................................................................................2322000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CGAGGTATAGAGTTCCTACGT...................................................................................2127100000000000010200000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...........................................CGAGGTATAGAGTTCCTACG....................................................................................202639812718273321181920110929813774909357541566566162727695468471532381121433163335132541451631736522722374112081362061892112993381812104415203763412235127131222148121631734226910047192627283418263841079354251840121833053780390191312172109640019010721110200008100211010063032000400001001011000000000
............................................GAGGTATAGAGTTCCTACG....................................................................................19215086100523832416000126121016701131614341851096316131446957002670683185447652025347414103141511231481419317316278414211621612729328113176086912540930630200014300254106208019043102002021011072000000000001100400012010200100002000000000000000
............................................GAGGTATAGAGTTCCTACGTT..................................................................................2125000000000000000100000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000
............................................GAGGTATAGAGTTCCTAC.....................................................................................18259003610100001001101000700000110100000000010000100100000001000000000010001103000100000061000000011010000010000000000000000010000000000004000700000000000000000000000000000000000000000000000000
............................................GAGGTATAGAGTTCCTACGTTCAT...............................................................................2411000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GAGGTATAGAGTTCCTACGT...................................................................................2028001000000000000200100000000000000000000000000001000000100000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AGGTATAGAGTTCCTACGT...................................................................................1921000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................AGGTATAGAGTTCCTACGTT..................................................................................2021000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AGGTATAGAGTTCCTACG....................................................................................182140401202000000543300704390200141120101000000130815310028300000000210005000107000211100060000000301010200200000000000001100000020000004000000010000000000000000000000000000000000000000000000000
..............................................GGTATAGAGTTCCTACGT...................................................................................1822000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TTCATTATAAACTCGTAGGAACTTC...........................................................2511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................................................TAAACTCGTAGGAACTTCATACCGTGCT.................................................2811000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AAACTCGTAGGAACTTCATACCGTGCTC................................................2813010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.......................................................................AAACTCGTAGGAACTTCATACCGT....................................................2411000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AAACTCGTAGGAACTTCATACCGTGC..................................................2611000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AAACTCGTAGGAACTTCATACCGTGCTCT...............................................2911000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AACTCGTAGGAACTTCATACCG.....................................................2211000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................ACTCGTAGGAACTTCATACCGTGCTCT...............................................2712000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................ACTCGTAGGAACTTCATACCGTGCT.................................................2511000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................ACTCGTAGGAACTTCATACCG.....................................................2112000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CTCGTAGGAACTTCATACCGTG...................................................2213000001000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................CTCGTAGGAACTTCATACCGTGCTC................................................2511001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CTCGTAGGAACTTCATACCGTGC..................................................2315000000000000000000000000000000000000000010000000000000000010001000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000
..........................................................................CTCGTAGGAACTTCATACCGTGCT.................................................2411000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TCGTAGGAACTTCATACCGTGC..................................................2212000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TCGTAGGAACTTCATACCGTGCTCT...............................................251190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001900000000000000000000000000000000000000000000000000000000
...........................................................................TCGTAGGAACTTCATACCGTGCTC................................................2412000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................CGTAGGAACTTCATACCGTGCT.................................................2211000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CGTAGGAACTTCATACCGTGCTCT...............................................2414000000000000000000000000000000000001000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................GTAGGAACTTCATACCGTG...................................................1911000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................GTAGGAACTTCATACCGTGCTC................................................22111100001000110001010000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000100000000000000010000000000000000000000000000000000000000
.............................................................................GTAGGAACTTCATACCGTGCTCT...............................................23137430000002201034020000020110000020001110000010000000010000000000000000000000000001000000001000000000010000000000000000000000000000000100000000000000000000000000000100000000000000000000000000
.............................................................................GTAGGAACTTCATACCGTGC..................................................2012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................GTAGGAACTTCATACCGTGCT.................................................2111000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTG...................................................18122728871823046107526252234163523283031412453164406041813131708130155504214012012011141010000014410011000015200000200015101970080026810400014000300012222300021730000000340200002720012300001716180001450020000004000000151600200100000
..............................................................................TAGGAACTTCATACCGTGCTC................................................2112787683358618083202541324715899882317461112895115291343191501491945876184477730884881074124308921035651151934572030241387816347863303027114722277411646227022705871720197625595954602181244591495292502827583106998436373322837144813072394364422016192462422742472871373064243745824582317815459282173268128819844520511312042471632702063879482316823456908091065152444438762178919158844392971534358741230658171922195385866373518447033060711966013143355335731454997564211257019613591782191111614445231560193311210772441122613311915159032018001131300000
..............................................................................TAGGAACTTCATACCGTGCTCTT..............................................231557664773495243032365200327829910228242277282031571762046189271822162017147207804574432335693864442362301501113841857192311445815811573549689896195435988901240383113200258574013610813441218143231645657813445447412115731789169624340306453272723126371126378816141372247138251857392232801507610321169719636112021551115814145021117019847464258610194535171729214179111122041538157069120503101012551000100012000000
..............................................................................TAGGAACTTCATACCGTGCTCTTG.............................................24119817238409012134170853102100030210020000100220200000000000111010100000000110000000000010000010000000000400030000100000000000100010000000200000009000000000000000980000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGC..................................................1914725239861926702810791427321593825152120351429754163171437693562414108250902331301607641200940010411111001532133260007260111101105228134225011160387007020670012400218010540412043001030619021170010060365510002121327001569102000900026702020100442001500600000
..............................................................................TAGGAACTTCATACCGTGCTCTTGGAAGACCAAA...................................3413000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGCT.................................................20139673311823192941272117911241811011583507171612811751846166035685311641344262540085418616772201761472313743269014821457203178178524228228947106960442210311776122727321127330148279495248161089925282626363373212934288144020681823176227520552032221662872614714224891485488120135919175295216283518169136074794742935731191533141132187113803055771411106271611031161504344342030113401312321001634437023011500700000
..............................................................................TAGGAACTTCATACCGTGCTCTTGGAAG.........................................28170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002400000000000000029170000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGCTCTTGGAAGAC.......................................30148000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000000000000018160000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGCTCTTGGAAGACC......................................3113000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000110000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGCTCTTGGAAGACCAA....................................33110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000320000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGCTCTTGGA...........................................26110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000160000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGCTCTTGGAAGA........................................2914000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000110000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGCTCTTGG............................................25117000001001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000710000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGCTCT...............................................22135942683970812654542353841752881882017742314784131331478691454721380181317842220611144310508632787940699271116576803862616475534435452536428542607336030328423183818003982533328221402662815216258973912339123127182805912424324739865226664937107145635617215167154259771173816475146064832594685626858216246141098919103514680110876775568653274759783112512715811777095392528926852804560378167161229283949512136921994370437335679878644445246759384453743735702435234111295369332627109712093665486438808415124524220051564543669434798141842465542311929973868460625015178405638545151429220527562132233433191849202928626655081375128621501985172811579120714881252110811286777710982351862666065692394976267316240721738331961943282782781170191624851273916952100
..............................................................................TAGGAACTTCATACCGTGCTCTTGGAAGACCA.....................................3215000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000110000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGCTCTTGGAA..........................................271270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015000000000000000750000000000000000000000000000000000
..............................................................................TAGGAACTTCATACCGTGCTCTTGGAAGACCAAAA..................................35110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000260000000000000000000000000000000000
...............................................................................AGGAACTTCATACCGTGCTCTTGG............................................2411000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................AGGAACTTCATACCGTGCTCTTGGA...........................................2511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...............................................................................AGGAACTTCATACCGTGCTCTTGGAAG.........................................2711000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...............................................................................AGGAACTTCATACCGTGCTCT...............................................2112749648585038329536482188692454123412731841413521417313173217311210913910878115851574773109534534545343623512734310255530261601037295251155301191023480205423022114038920323291424243022100036005902459301690161501103304045344000364100020410217109007120014010002002003000000000000000000
...............................................................................AGGAACTTCATACCGTGCTC................................................2012269421396296191136002711131131401208732235002371300020050300222202130000000003300300011300100000000000701003000004000000001030127001004002000050000000001000010000070000000200100003000000000200000000000000100000000000000
...............................................................................AGGAACTTCATACCGTGCT.................................................191281314043001200284160018260341040301000000200001100020101000010000000010000000000000040000000040200000000010002000001100000003000100000100000000000001000000200000000000000410000000000000000000000000000
...............................................................................AGGAACTTCATACCGTGCTCTTGGAAGAC.......................................2911000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...............................................................................AGGAACTTCATACCGTGCTCTT..............................................221598739950430410045262450272204110064100130030006000066070402000030302110000002000010000100000300100000200000000011002400001100000010001000030100102100000010000100000000000010000000000000000000000000000000000
...............................................................................AGGAACTTCATACCGTGC..................................................18130222001000010001000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000200000000000000000000004000000000000000600000000000000600000000000000001000000000000
................................................................................GGAACTTCATACCGTGCTCTT..............................................2117463213010011000110200061501000310000000000001030000000030000001000002000010000000000000000001000011000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
................................................................................GGAACTTCATACCGTGCTCT...............................................201681035018010213121942185403422379575393821456330466330712192217111224512121010323801101470100213060112461103112213302125200006900000492065000003010496610034780410040000000000010400410003110600320204025900040505101020001021000000050000391000000000000000000000
................................................................................GGAACTTCATACCGTGCT.................................................18162400801001010002000005170800301040000000400000000100010000004100000000000000010010000000000000000000000000000000000001000000000000000000000000000000000000000000200000000000000000000000000000
................................................................................GGAACTTCATACCGTGCTC................................................19145537271210409001054206205600241240034001169018000011016000201004030100000005300003000010002030020000000001000013100000000000000000001000100100000000400000000100000000000000000010000000000000000000000000000
.................................................................................GAACTTCATACCGTGCTC................................................18110611103800002012023710000260500051020000000000000000100110000004000000000000000010000000000000010000000010020000000100001100000010000000100000000000000000000000000000000000000000000000000000000
.................................................................................GAACTTCATACCGTGCTCT...............................................191358566326035104005126182211033911311739070101220200080110016000240000213020022010100210300300100120200000011100000000300000000002100000000000000100000000000000000000000000040000300000001000000000000000
.................................................................................GAACTTCATACCGTGCTCTT..............................................20110400000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AACTTCATACCGTGCTCTT..............................................1919241000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AACTTCATACCGTGCTCTTG.............................................2011001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AACTTCATACCGTGCTCT...............................................181531893139303501291453543965612302010104121402022221000401101801225210100000210313300001000111102011030010002110320000020000010100300035012010300010010002010000000000000000000020000100000000000000000000000
...................................................................................ACTTCATACCGTGCTCTT..............................................18112401000000000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000001000000000000000000000000000000000
....................................................................................................TGGAAGACCAAAAAACAACCAAGTGAA....................2715000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000003000000000000000000000000000000
...........................................................................................................................TGAATGCAAAAATCCCAAAA....2011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                                   SizeBlastTotalSRR031696_2152 SRR031703 Total small RNAs from r2d2 homozygous flies SRR029633 total small RNAs from hen1 homozygous flies S29 male head #1V098 dcr-2[L811fsX] ovarySRR031692 Total small RNAs from Oregon R V090 CS  male total RNA  V097 CS ovarySRR031701 Total small RNAs from r2d2 heterozygous flies SRR001345 ago2 non-beta-eliminated SRR001338 IR non-beta-eliminated SRR001349 heterozygous dcr-2_untreated V083 male, one daySRR031699 Total small RNAs from dcr-2 homozygous flies SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR001347 ago2 untreated SRR001664 homozygous dcr-2_untreated V084 female, one dayV082 embryo 14-24hrS24 male body #2S35 KC+48 #2S22 female head #1V009 CMEL1S32 s2+48 #2V008 S2-DRSCV026 1182-4H cellS28 0-2d pupaeS34 KC+48 #1S33 KC-48 #2V020 S2R+ cellS31 s2+48 #1V010 MLDmD20c5V024 kc167 cellV018 Kc167 cellV033 CMEW1 Cl.8+ cellSRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated V088 r2d2[1] ovary total RNA  S2 female headV065 dcr-2[L811fsX], ovary, AGO1IPSRR001343 dcr-2 non-beta-eliminated V025 S2R+ cellS27 0-1d Pupae (w)V089 ago2[414] ovary total RNA  V063 CS,ovary,AGO1IPSRR014273 Ovary_rep1_Har_P SRR014275 Ovary_rep1 LK_P S19 2-4day pupae #1GSM280087 S2cell (AGO2IP) SRR001344 dcr-2 beta-eliminated V028 CMEW1 Cl.8+ cellS23 female body #2S9 0-1h #3 (7)SRR014277 Ovary_rep1 NA_P V076 ML-DmBG3-C2SRR032096 AGO2 IP dcr2 knockdownV064 ago2[414], ovary, AGO1IPV067 S2-NPS1 male headS21 disk #2GSM379057 Krimp Mutant GSM379065 Zuc Heterozygote SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM379059 S16 KC -48 #1GSM379063 Vasa Heterozygote GSM379051 Armi Mutant SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 GSM379053 Aub Mutant S5 imaginal discGSM379064 Vasa Mutant SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM379056 Krimp Heterozygote SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies V075 ML-DmBG1-C1S30 s2-48 #2V021 ML-DmD21 cellV002 IR+S15 S2 -48 #1GSM379061 Squ Heterozygote GSM379050 Armi Heterozygote GSM379052 Aub Heterozygote SRR029028 untreated (mock) GSM379054 Flam Heterozygote SRR031693_4 GSM379066 Zuc Mutant S12 6-10h #1 (10)S13 6-10h #2 (11)S18 3rd inster #2GSM280084 loqs-/- ovaries (18-29nt) V001 IR-V011 Sg4SRR032093 ago1 knockdown S3 male bodyS17 3rd inster #1OSS6 Drosophila OSS cell small RNA libraries, rep2 GSM379060 SpnE Heterozygote GSM280088 S2cell (AGO1IP) SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies OSS2 Drosophila OSS cell small RNA libraries, rep1 GSM379058 SRR029031 loqs-ORF knockdown SRR032095 AGO1 IP dcr2 knockdown V066 r2d2[1], ovary, AGO1IPSRR031704 2-O-methylated small RNAs from r2d2 homozygous flies GSM379062 Squ Mutant GSM424739 S2 parental GSM239041 fly heads, non beta-eliminated GSM180328 adult heads (female heads, male heads) SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM379055 Flam Mutant V019 GM2 cellSRR001337 WT_females beta-eliminated S20 2-4day pupae#2SRR014280 Ovary_rep1 w1118_P S8 S2-48,+48, KC-48, +48 mixOSS7 Drosophila OSS cell small RNA libraries, rep3 GSM424740 S2 pKF63 stably transfected GSM379067 SpnE Mutant S4 female bodyOSS8 Drosophila OSS cell small RNA libraries, rep4 SRR029030 dcr-2 knockdown SRR001348 ago2 oxidized GSM280083 dcr-2-/- ovaries (18-29nt) V081 embryo 2-6hrS7 12-24hr embryoSRR014282 Ovary_rep1 wK_P SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies GSM239052 S2 cells, non beta-eliminated S10 2-6h #1 (8)SRR029032 r2d2 knockdown GSM246084 D. melanogaster adult male heads 454 SRR029033 lacZ knockdown SRR032094 ago2 knockdown SRR032092 mock oxidized SRR010959 Ago3 IP in heterozygotes GSM467729 WT SRR029029 dcr-1 knockdown GSM280082 WT ovaries (18-29nt) GSM280085 WT testes (18-24nt) SRR001346 ago2 beta-eliminated GSM180335 imaginal discs GSM180329 adult bodies (female bodies, male bodies) SRR010954 Aub trans-heterozygotes, oxidized GSM180333 late embryo (12-24) SRR010955 Aub IP in Ago3 heterozygotes SRR023400 total RNA extracted from P19 cells SRR023197 RNA Library from S2 control cells SRR001340 IR beta-eliminated GSM424741 S2 pKF63 transiently transfected GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day SRR010958 Piwi IP in Ago3 trans-heterozygotes GSM467731 loq GSM467730 r2d2 GSM239050 fly heads, beta-eliminated SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb GSM180334 larvae: 1st instar and 3rd instars SRR010956 Piwi IP in Ago3 heterozygotes SRR010953 Aub heterozygotes, oxidized S25 1st instar #1SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR023399 RNA bound by P19 protein SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM180337 tissue culture cells (S2 only) S26 1st instar #2S11 2-6h #2 (9)GSM180332 mid embryo (6-10) SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb SRR023402 total RNA extracted from NLS-P19 cells SRR001342 WT_males beta-eliminated SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023407 RNA bound by NLS-P19 protein S14 0-1hr #1 (A)GSM343287 Drosophila Toll 10b mutant embryos SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR010960 wt, oxidized GSM239051 S2 cells, beta-eliminated GSM280086 WT ovaries (AGO2IP) GSM180331 early embryo (2-6) SRR010952 Ago3 trans-heterozygotes, oxidized GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM180330 very early embryo (0-1) SRR010951 Ago3 heterozygotes, oxidized GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries
.............................GTTTTTGCCATCAGCGAGG...................................................................................................1911000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................TCAGCGAGGTATAGAGTTCCTA......................................................................................2226000000000000000000000000000002002000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CGTAGGAACTTCATACCGT....................................................1911000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CGTAGGAACTTCATACCGTGCT.................................................2213000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GTAGGAACTTCATACCGTGCT.................................................2113000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GTAGGAACTTCATACCGTGC..................................................2011000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AACTTCATACCGTGCTCTTGGAAG.........................................2411000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000