Page generated on Fri Oct 15 12:01:21 2010

dme-mir-279



dme-mir-279

View dme-mir-279 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-279	149	1112303	1	37	22623	182	1089267	8	187	19	1089267	22623

TGGAATTGGGACTGGAGCTGGAATTGGAATTCATACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTGATTTTCTTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAAGCACGTGTTTTCTTG
..................................(((((((((.((((((((((.(((((.((....(((((...(((.....)))...))))))).))))).)))))))))).)))))))))..........................-36.40
.......(((((((..(((.(((((((.......(((((((((.((((((((((.(((((.((....(((((...(((.....)))...))))))).))))).)))))))))).))))))))))))))..)).))).)).)))))....-42.81
Sense strand

	Size	Blast	Total	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	S32 s2+48 #2	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	S31 s2+48 #1	SRR031696_2152	S33 KC-48 #2	S30 s2-48 #2	S29 male head #1	S15 S2 -48 #1	V076 ML-DmBG3-C2	GSM467729 WT	V063 CS,ovary,AGO1IP	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM467731 loq	V011 Sg4	GSM467730 r2d2	S28 0-2d pupae	V098 dcr-2[L811fsX] ovary	V009 CMEL1	S16 KC -48 #1	V024 kc167 cell	SRR032095 AGO1 IP dcr2 knockdown	V026 1182-4H cell	GSM379064 Vasa Mutant	SRR031692 Total small RNAs from Oregon R	S23 female body #2	S35 KC+48 #2	V008 S2-DRSC	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V033 CMEW1 Cl.8+ cell	V066 r2d2[1], ovary, AGO1IP	GSM379065 Zuc Heterozygote	S27 0-1d Pupae (w)	V064 ago2[414], ovary, AGO1IP	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V010 MLDmD20c5	V088 r2d2[1] ovary total RNA	V025 S2R+ cell	S24 male body #2	S9 0-1h #3 (7)	V097 CS ovary	S19 2-4day pupae #1	S22 female head #1	S34 KC+48 #1	GSM280088 S2cell (AGO1IP)	V067 S2-NP	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379057 Krimp Mutant	SRR001338 IR non-beta-eliminated	S14 0-1hr #1 (A)	V020 S2R+ cell	GSM379056 Krimp Heterozygote	V082 embryo 14-24hr	S8 S2-48,+48, KC-48, +48 mix	SRR029030 dcr-2 knockdown	S12 6-10h #1 (10)	V018 Kc167 cell	S10 2-6h #1 (8)	V021 ML-DmD21 cell	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V081 embryo 2-6hr	SRR029028 untreated (mock)	V028 CMEW1 Cl.8+ cell	SRR023402 total RNA extracted from NLS-P19 cells	SRR001664 homozygous dcr-2_untreated	SRR001345 ago2 non-beta-eliminated	SRR001349 heterozygous dcr-2_untreated	SRR014275 Ovary_rep1 LK_P	SRR014280 Ovary_rep1 w1118_P	S2 female head	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379060 SpnE Heterozygote	SRR014282 Ovary_rep1 wK_P	GSM379063 Vasa Heterozygote	S5 imaginal disc	V075 ML-DmBG1-C1	GSM379052 Aub Heterozygote	GSM379066 Zuc Mutant	S21 disk #2	V019 GM2 cell	S13 6-10h #2 (11)	SRR014277 Ovary_rep1 NA_P	V089 ago2[414] ovary total RNA	SRR001347 ago2 untreated	V083 male, one day	SRR032094 ago2 knockdown	GSM379051 Armi Mutant	GSM379062 Squ Mutant	GSM280083 dcr-2-/- ovaries (18-29nt)	S11 2-6h #2 (9)	S1 male head	S4 female body	V084 female, one day	SRR001343 dcr-2 non-beta-eliminated	SRR014273 Ovary_rep1_Har_P	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379054 Flam Heterozygote	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR001344 dcr-2 beta-eliminated	S7 12-24hr embryo	SRR029033 lacZ knockdown	SRR029031 loqs-ORF knockdown	S18 3rd inster #2	GSM379053 Aub Mutant	SRR029029 dcr-1 knockdown	GSM379059	V001 IR-	GSM379058	GSM280085 WT testes (18-24nt)	GSM280084 loqs-/- ovaries (18-29nt)	GSM379067 SpnE Mutant	SRR029032 r2d2 knockdown	S3 male body	V002 IR+	S17 3rd inster #1	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM379061 Squ Heterozygote	GSM379050 Armi Heterozygote	S20 2-4day pupae#2	SRR032093 ago1 knockdown	V090 CS  male total RNA	GSM180337 tissue culture cells (S2 only)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM180328 adult heads (female heads, male heads)	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR010956 Piwi IP in Ago3 heterozygotes	GSM280082 WT ovaries (18-29nt)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR010954 Aub trans-heterozygotes, oxidized	GSM424739 S2 parental	GSM379055 Flam Mutant	GSM180335 imaginal discs	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S25 1st instar #1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR010953 Aub heterozygotes, oxidized	GSM180333 late embryo (12-24)	SRR010959 Ago3 IP in heterozygotes	GSM424740 S2 pKF63 stably transfected	GSM343287 Drosophila Toll 10b mutant embryos	SRR031693_4	SRR001348 ago2 oxidized	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180331 early embryo (2-6)	GSM180329 adult bodies (female bodies, male bodies)	GSM180334 larvae: 1st instar and 3rd instars	GSM180330 very early embryo (0-1)	GSM180332 mid embryo (6-10)	SRR001337 WT_females beta-eliminated	S26 1st instar #2	GSM239052 S2 cells, non beta-eliminated	SRR010955 Aub IP in Ago3 heterozygotes	SRR032092 mock oxidized	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR032096 AGO2 IP dcr2 knockdown	GSM239041 fly heads, non beta-eliminated	SRR001340 IR beta-eliminated	SRR001346 ago2 beta-eliminated	GSM280087 S2cell (AGO2IP)	SRR023399 RNA bound by P19 protein	SRR010960 wt, oxidized	SRR023400 total RNA extracted from P19 cells	SRR023197 RNA Library from S2 control cells	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM424741 S2 pKF63 transiently transfected	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	SRR010951 Ago3 heterozygotes, oxidized	SRR001342 WT_males beta-eliminated	GSM239051 S2 cells, beta-eliminated	GSM239050 fly heads, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM280086 WT ovaries (AGO2IP)	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries
.GGAATTGGGACTGGAGCTGGAATTGG..........................................................................................................................	26	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GAATTGGGACTGGAGCTGGAATTGG..........................................................................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GAATTGGGACTGGAGCTGGAATT............................................................................................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AATTGGGACTGGAGCTGGAATTGG..........................................................................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AATTGGGACTGGAGCTGGAATTGGAAT.......................................................................................................................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATTGGGACTGGAGCTGGA...............................................................................................................................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATTGGGACTGGAGCTGGAATTGG..........................................................................................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GGGACTGGAGCTGGAATTGG..........................................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AGCTGGAATTGGAATTCATACTACTG............................................................................................................	26	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GCTGGAATTGGAATTCATACTACTGTTT.........................................................................................................	28	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTGGAATTGGAATTCATACTACTGTTTTT.......................................................................................................	29	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................ACTAGATCCACACTCATT......................................	18	1	113	5	10	2	6	8	0	7	2	0	0	2	0	0	2	0	3	0	0	0	0	0	0	0	0	0	7	0	0	4	0	0	1	0	4	1	0	0	0	0	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	13	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................CTAGATCCACACTCATTAAT...................................	20	1	3	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................CTAGATCCACACTCATTAA....................................	19	1	173	26	29	6	25	28	1	1	0	5	0	1	0	0	6	0	2	3	0	0	1	0	0	0	0	0	0	0	0	1	0	3	0	0	3	0	3	0	0	0	0	1	0	3	0	0	0	1	0	0	0	0	0	2	0	1	1	0	2	0	0	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TAGATCCACACTCATTAA....................................	18	1	303	60	58	14	56	55	5	1	1	2	3	1	1	0	4	0	0	1	0	0	1	4	2	0	0	0	0	0	0	0	0	4	0	1	0	0	1	0	0	0	1	0	0	0	0	0	6	1	1	0	0	0	0	1	0	1	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................AGATCCACACTCATTAAT...................................	18	1	3	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CACTCATTAATAACGGTAGT..........................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................ATAACGGTAGTTCAATCATC.................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................ATAACGGTAGTTCAATCATCA................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TAACGGTAGTTCAATCAT..................	18	1	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TAACGGTAGTTCAATCATCAAGCACG..........	26	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TAACGGTAGTTCAATCATCA................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TAACGGTAGTTCAATCATCAAGCA............	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	S32 s2+48 #2	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	S31 s2+48 #1	SRR031696_2152	S33 KC-48 #2	S30 s2-48 #2	S29 male head #1	S15 S2 -48 #1	V076 ML-DmBG3-C2	GSM467729 WT	V063 CS,ovary,AGO1IP	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM467731 loq	V011 Sg4	GSM467730 r2d2	S28 0-2d pupae	V098 dcr-2[L811fsX] ovary	V009 CMEL1	S16 KC -48 #1	V024 kc167 cell	SRR032095 AGO1 IP dcr2 knockdown	V026 1182-4H cell	GSM379064 Vasa Mutant	SRR031692 Total small RNAs from Oregon R	S23 female body #2	S35 KC+48 #2	V008 S2-DRSC	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V033 CMEW1 Cl.8+ cell	V066 r2d2[1], ovary, AGO1IP	GSM379065 Zuc Heterozygote	S27 0-1d Pupae (w)	V064 ago2[414], ovary, AGO1IP	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V010 MLDmD20c5	V088 r2d2[1] ovary total RNA	V025 S2R+ cell	S24 male body #2	S9 0-1h #3 (7)	V097 CS ovary	S19 2-4day pupae #1	S22 female head #1	S34 KC+48 #1	GSM280088 S2cell (AGO1IP)	V067 S2-NP	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379057 Krimp Mutant	SRR001338 IR non-beta-eliminated	S14 0-1hr #1 (A)	V020 S2R+ cell	GSM379056 Krimp Heterozygote	V082 embryo 14-24hr	S8 S2-48,+48, KC-48, +48 mix	SRR029030 dcr-2 knockdown	S12 6-10h #1 (10)	V018 Kc167 cell	S10 2-6h #1 (8)	V021 ML-DmD21 cell	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V081 embryo 2-6hr	SRR029028 untreated (mock)	V028 CMEW1 Cl.8+ cell	SRR023402 total RNA extracted from NLS-P19 cells	SRR001664 homozygous dcr-2_untreated	SRR001345 ago2 non-beta-eliminated	SRR001349 heterozygous dcr-2_untreated	SRR014275 Ovary_rep1 LK_P	SRR014280 Ovary_rep1 w1118_P	S2 female head	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379060 SpnE Heterozygote	SRR014282 Ovary_rep1 wK_P	GSM379063 Vasa Heterozygote	S5 imaginal disc	V075 ML-DmBG1-C1	GSM379052 Aub Heterozygote	GSM379066 Zuc Mutant	S21 disk #2	V019 GM2 cell	S13 6-10h #2 (11)	SRR014277 Ovary_rep1 NA_P	V089 ago2[414] ovary total RNA	SRR001347 ago2 untreated	V083 male, one day	SRR032094 ago2 knockdown	GSM379051 Armi Mutant	GSM379062 Squ Mutant	GSM280083 dcr-2-/- ovaries (18-29nt)	S11 2-6h #2 (9)	S1 male head	S4 female body	V084 female, one day	SRR001343 dcr-2 non-beta-eliminated	SRR014273 Ovary_rep1_Har_P	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379054 Flam Heterozygote	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR001344 dcr-2 beta-eliminated	S7 12-24hr embryo	SRR029033 lacZ knockdown	SRR029031 loqs-ORF knockdown	S18 3rd inster #2	GSM379053 Aub Mutant	SRR029029 dcr-1 knockdown	GSM379059	V001 IR-	GSM379058	GSM280085 WT testes (18-24nt)	GSM280084 loqs-/- ovaries (18-29nt)	GSM379067 SpnE Mutant	SRR029032 r2d2 knockdown	S3 male body	V002 IR+	S17 3rd inster #1	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM379061 Squ Heterozygote	GSM379050 Armi Heterozygote	S20 2-4day pupae#2	SRR032093 ago1 knockdown	V090 CS  male total RNA	GSM180337 tissue culture cells (S2 only)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM180328 adult heads (female heads, male heads)	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR010956 Piwi IP in Ago3 heterozygotes	GSM280082 WT ovaries (18-29nt)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR010954 Aub trans-heterozygotes, oxidized	GSM424739 S2 parental	GSM379055 Flam Mutant	GSM180335 imaginal discs	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S25 1st instar #1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR010953 Aub heterozygotes, oxidized	GSM180333 late embryo (12-24)	SRR010959 Ago3 IP in heterozygotes	GSM424740 S2 pKF63 stably transfected	GSM343287 Drosophila Toll 10b mutant embryos	SRR031693_4	SRR001348 ago2 oxidized	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180331 early embryo (2-6)	GSM180329 adult bodies (female bodies, male bodies)	GSM180334 larvae: 1st instar and 3rd instars	GSM180330 very early embryo (0-1)	GSM180332 mid embryo (6-10)	SRR001337 WT_females beta-eliminated	S26 1st instar #2	GSM239052 S2 cells, non beta-eliminated	SRR010955 Aub IP in Ago3 heterozygotes	SRR032092 mock oxidized	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR032096 AGO2 IP dcr2 knockdown	GSM239041 fly heads, non beta-eliminated	SRR001340 IR beta-eliminated	SRR001346 ago2 beta-eliminated	GSM280087 S2cell (AGO2IP)	SRR023399 RNA bound by P19 protein	SRR010960 wt, oxidized	SRR023400 total RNA extracted from P19 cells	SRR023197 RNA Library from S2 control cells	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM424741 S2 pKF63 transiently transfected	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	SRR010951 Ago3 heterozygotes, oxidized	SRR001342 WT_males beta-eliminated	GSM239051 S2 cells, beta-eliminated	GSM239050 fly heads, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM280086 WT ovaries (AGO2IP)	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries
..............................................AGTGGGTGGGGGTCCAGTGTTTCACA.............................................................................	26	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0