Page generated on Fri Oct 15 12:01:35 2010

dme-mir-283



dme-mir-283

View dme-mir-283 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-283	149	162593	11	3818	153783	132	4845	2	24	24	153783	4845

AGAAAAAAATAGAGAAAAGTGTCACCTCACACGATTCTCAAAGGTAAATATCAGCTGGTAATTCTGGGAGCTAAGCCTAAATATGAAACACTCGGAATTTCAGTTGGTATCGACTTTTTTGAATTGCATTTGATCACCATAAGCGCAAC
................................(((((..((((((..(((((((((((.(((((((((......................))))))))))))))))))))..))))))..)))))........................-29.55
...........(((((..((((......))))..))))).(((((..(((((((((((.(((((((((......................))))))))))))))))))))..)))))......((((.((((.......)))).)))).-35.85
Sense strand

	Size	Blast	Total	V019 GM2 cell	V009 CMEL1	V021 ML-DmD21 cell	V018 Kc167 cell	V098 dcr-2[L811fsX] ovary	V097 CS ovary	V082 embryo 14-24hr	SRR031703 Total small RNAs from r2d2 homozygous flies	V024 kc167 cell	SRR031696_2152	S33 KC-48 #2	GSM379057 Krimp Mutant	V028 CMEW1 Cl.8+ cell	V033 CMEW1 Cl.8+ cell	V008 S2-DRSC	SRR029633 total small RNAs from hen1 homozygous flies	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR031701 Total small RNAs from r2d2 heterozygous flies	V081 embryo 2-6hr	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379065 Zuc Heterozygote	OSS2 Drosophila OSS cell small RNA libraries, rep1	V088 r2d2[1] ovary total RNA	V010 MLDmD20c5	V011 Sg4	SRR001345 ago2 non-beta-eliminated	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V063 CS,ovary,AGO1IP	SRR031692 Total small RNAs from Oregon R	SRR014275 Ovary_rep1 LK_P	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM379061 Squ Heterozygote	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM379051 Armi Mutant	GSM379063 Vasa Heterozygote	GSM379060 SpnE Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014277 Ovary_rep1 NA_P	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR023400 total RNA extracted from P19 cells	GSM379064 Vasa Mutant	SRR010959 Ago3 IP in heterozygotes	V001 IR-	S16 KC -48 #1	SRR014280 Ovary_rep1 w1118_P	GSM379066 Zuc Mutant	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR023399 RNA bound by P19 protein	V089 ago2[414] ovary total RNA	V076 ML-DmBG3-C2	V075 ML-DmBG1-C1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379058	V020 S2R+ cell	SRR014282 Ovary_rep1 wK_P	GSM379052 Aub Heterozygote	V026 1182-4H cell	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V002 IR+	S13 6-10h #2 (11)	S12 6-10h #1 (10)	S35 KC+48 #2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR014273 Ovary_rep1_Har_P	GSM379062 Squ Mutant	GSM379056 Krimp Heterozygote	GSM379053 Aub Mutant	SRR010955 Aub IP in Ago3 heterozygotes	V066 r2d2[1], ovary, AGO1IP	GSM379054 Flam Heterozygote	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379067 SpnE Mutant	SRR001338 IR non-beta-eliminated	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V090 CS  male total RNA	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379050 Armi Heterozygote	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR010956 Piwi IP in Ago3 heterozygotes	SRR010960 wt, oxidized	SRR023197 RNA Library from S2 control cells	GSM424739 S2 parental	SRR001344 dcr-2 beta-eliminated	GSM280085 WT testes (18-24nt)	V064 ago2[414], ovary, AGO1IP	SRR001343 dcr-2 non-beta-eliminated	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR031693_4	V083 male, one day	S28 0-2d pupae	V084 female, one day	SRR010954 Aub trans-heterozygotes, oxidized	V025 S2R+ cell	GSM424740 S2 pKF63 stably transfected	S34 KC+48 #1	S32 s2+48 #2	V067 S2-NP	SRR010953 Aub heterozygotes, oxidized	S9 0-1h #3 (7)	S10 2-6h #1 (8)	GSM379055 Flam Mutant	S19 2-4day pupae #1	S29 male head #1	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S24 male body #2	GSM379059	GSM280083 dcr-2-/- ovaries (18-29nt)	S23 female body #2	GSM280082 WT ovaries (18-29nt)	SRR032095 AGO1 IP dcr2 knockdown	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001337 WT_females beta-eliminated	S31 s2+48 #1	S27 0-1d Pupae (w)	SRR029030 dcr-2 knockdown	SRR029028 untreated (mock)	SRR029032 r2d2 knockdown	SRR010951 Ago3 heterozygotes, oxidized	S30 s2-48 #2	SRR023402 total RNA extracted from NLS-P19 cells	SRR001664 homozygous dcr-2_untreated	S8 S2-48,+48, KC-48, +48 mix	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM424741 S2 pKF63 transiently transfected	SRR001347 ago2 untreated	S17 3rd inster #1	SRR001349 heterozygous dcr-2_untreated	S14 0-1hr #1 (A)	S21 disk #2	S7 12-24hr embryo	GSM280088 S2cell (AGO1IP)	SRR032093 ago1 knockdown	S15 S2 -48 #1	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	GSM467729 WT	S22 female head #1	SRR029033 lacZ knockdown	GSM343287 Drosophila Toll 10b mutant embryos	S4 female body	GSM280084 loqs-/- ovaries (18-29nt)	GSM180333 late embryo (12-24)	GSM239051 S2 cells, beta-eliminated	SRR029031 loqs-ORF knockdown	SRR032092 mock oxidized	S5 imaginal disc	S11 2-6h #2 (9)	GSM467730 r2d2	SRR001346 ago2 beta-eliminated	S3 male body	SRR032096 AGO2 IP dcr2 knockdown	S18 3rd inster #2	S25 1st instar #1	S2 female head	S26 1st instar #2	GSM180331 early embryo (2-6)	SRR029029 dcr-1 knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180329 adult bodies (female bodies, male bodies)	S20 2-4day pupae#2	GSM239052 S2 cells, non beta-eliminated	GSM180335 imaginal discs	GSM180334 larvae: 1st instar and 3rd instars	SRR001348 ago2 oxidized	GSM180337 tissue culture cells (S2 only)	GSM467731 loq	SRR001342 WT_males beta-eliminated	GSM280087 S2cell (AGO2IP)	GSM180328 adult heads (female heads, male heads)	GSM180330 very early embryo (0-1)	S1 male head	SRR001340 IR beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM239041 fly heads, non beta-eliminated	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
........ATAGAGAAAAGTGTCACCTCACACGAT..................................................................................................................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AGTGTCACCTCACACGATTCT...............................................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CACCTCACACGATTCTCAAAGGTA.......................................................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CACCTCACACGATTCTCAAAGGT........................................................................................................	23	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ACCTCACACGATTCTCAAAGGT........................................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CCTCACACGATTCTCAAAGGT........................................................................................................	21	1	36	0	2	2	1	3	1	0	0	1	0	1	2	2	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	1	0	0	1	1	0	0	0	0	2	0	1	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CTCACACGATTCTCAAAGG.........................................................................................................	19	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CTCACACGATTCTCAAAGGT........................................................................................................	20	1	315	3	7	11	6	17	11	11	3	3	0	4	10	5	13	2	0	8	0	0	0	21	6	25	0	12	0	0	0	0	0	0	5	0	9	0	3	3	1	7	7	0	0	6	0	8	6	2	1	5	0	0	0	6	2	8	2	0	0	0	0	0	4	5	4	1	0	1	0	4	0	0	0	2	0	2	0	0	0	6	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	1	0	0	2	0	0	7	0	1	0	0	5	0	0	1	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TCACACGATTCTCAAAGGT........................................................................................................	19	1	3257	28	53	86	62	198	134	45	0	91	0	36	128	58	85	4	3	81	1	1	1	254	75	123	1	150	4	10	0	0	1	0	44	4	24	3	73	40	10	50	25	0	0	49	0	75	49	62	30	20	0	0	39	26	7	63	10	3	25	18	20	0	53	42	61	12	0	21	12	25	40	0	1	30	105	8	0	0	0	32	20	0	24	0	0	0	0	0	0	0	0	2	1	6	0	1	20	11	0	5	0	4	15	5	0	8	17	4	10	0	5	33	12	5	18	4	10	0	0	0	8	4	0	8	0	0	11	0	1	4	0	0	2	7	0	1	5	2	0	2	2	5	0	1	2	0	0	0	14	0	0	1	0	1	7	0	0	0	0	1	0	1	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TCACACGATTCTCAAAGG.........................................................................................................	18	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CACACGATTCTCAAAGGT........................................................................................................	18	1	182	1	1	5	9	9	4	3	0	12	0	10	0	3	6	1	0	5	0	0	0	33	1	0	0	1	0	2	0	0	1	0	3	0	2	0	2	0	0	2	2	0	0	0	0	8	5	0	1	0	0	0	0	0	1	0	1	0	0	0	1	0	6	9	3	4	0	1	1	0	1	0	0	0	0	1	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	5	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCTCAAAGGTAAATATCAGCT.............................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TAAATATCAGCTGGTAATTCTGGGAGCT.............................................................................	28	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................ATTTCAGTTGGTATCGAC...................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TGGTATCGACTTTTTTGAATTG.......................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TCGACTTTTTTGAATTGCATT...................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TTTTTTGAATTGCATTTGATCACCA..........	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V019 GM2 cell	V009 CMEL1	V021 ML-DmD21 cell	V018 Kc167 cell	V098 dcr-2[L811fsX] ovary	V097 CS ovary	V082 embryo 14-24hr	SRR031703 Total small RNAs from r2d2 homozygous flies	V024 kc167 cell	SRR031696_2152	S33 KC-48 #2	GSM379057 Krimp Mutant	V028 CMEW1 Cl.8+ cell	V033 CMEW1 Cl.8+ cell	V008 S2-DRSC	SRR029633 total small RNAs from hen1 homozygous flies	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR031701 Total small RNAs from r2d2 heterozygous flies	V081 embryo 2-6hr	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379065 Zuc Heterozygote	OSS2 Drosophila OSS cell small RNA libraries, rep1	V088 r2d2[1] ovary total RNA	V010 MLDmD20c5	V011 Sg4	SRR001345 ago2 non-beta-eliminated	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V063 CS,ovary,AGO1IP	SRR031692 Total small RNAs from Oregon R	SRR014275 Ovary_rep1 LK_P	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM379061 Squ Heterozygote	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM379051 Armi Mutant	GSM379063 Vasa Heterozygote	GSM379060 SpnE Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014277 Ovary_rep1 NA_P	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR023400 total RNA extracted from P19 cells	GSM379064 Vasa Mutant	SRR010959 Ago3 IP in heterozygotes	V001 IR-	S16 KC -48 #1	SRR014280 Ovary_rep1 w1118_P	GSM379066 Zuc Mutant	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR023399 RNA bound by P19 protein	V089 ago2[414] ovary total RNA	V076 ML-DmBG3-C2	V075 ML-DmBG1-C1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379058	V020 S2R+ cell	SRR014282 Ovary_rep1 wK_P	GSM379052 Aub Heterozygote	V026 1182-4H cell	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V002 IR+	S13 6-10h #2 (11)	S12 6-10h #1 (10)	S35 KC+48 #2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR014273 Ovary_rep1_Har_P	GSM379062 Squ Mutant	GSM379056 Krimp Heterozygote	GSM379053 Aub Mutant	SRR010955 Aub IP in Ago3 heterozygotes	V066 r2d2[1], ovary, AGO1IP	GSM379054 Flam Heterozygote	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379067 SpnE Mutant	SRR001338 IR non-beta-eliminated	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V090 CS  male total RNA	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379050 Armi Heterozygote	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR010956 Piwi IP in Ago3 heterozygotes	SRR010960 wt, oxidized	SRR023197 RNA Library from S2 control cells	GSM424739 S2 parental	SRR001344 dcr-2 beta-eliminated	GSM280085 WT testes (18-24nt)	V064 ago2[414], ovary, AGO1IP	SRR001343 dcr-2 non-beta-eliminated	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR031693_4	V083 male, one day	S28 0-2d pupae	V084 female, one day	SRR010954 Aub trans-heterozygotes, oxidized	V025 S2R+ cell	GSM424740 S2 pKF63 stably transfected	S34 KC+48 #1	S32 s2+48 #2	V067 S2-NP	SRR010953 Aub heterozygotes, oxidized	S9 0-1h #3 (7)	S10 2-6h #1 (8)	GSM379055 Flam Mutant	S19 2-4day pupae #1	S29 male head #1	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S24 male body #2	GSM379059	GSM280083 dcr-2-/- ovaries (18-29nt)	S23 female body #2	GSM280082 WT ovaries (18-29nt)	SRR032095 AGO1 IP dcr2 knockdown	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001337 WT_females beta-eliminated	S31 s2+48 #1	S27 0-1d Pupae (w)	SRR029030 dcr-2 knockdown	SRR029028 untreated (mock)	SRR029032 r2d2 knockdown	SRR010951 Ago3 heterozygotes, oxidized	S30 s2-48 #2	SRR023402 total RNA extracted from NLS-P19 cells	SRR001664 homozygous dcr-2_untreated	S8 S2-48,+48, KC-48, +48 mix	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM424741 S2 pKF63 transiently transfected	SRR001347 ago2 untreated	S17 3rd inster #1	SRR001349 heterozygous dcr-2_untreated	S14 0-1hr #1 (A)	S21 disk #2	S7 12-24hr embryo	GSM280088 S2cell (AGO1IP)	SRR032093 ago1 knockdown	S15 S2 -48 #1	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	GSM467729 WT	S22 female head #1	SRR029033 lacZ knockdown	GSM343287 Drosophila Toll 10b mutant embryos	S4 female body	GSM280084 loqs-/- ovaries (18-29nt)	GSM180333 late embryo (12-24)	GSM239051 S2 cells, beta-eliminated	SRR029031 loqs-ORF knockdown	SRR032092 mock oxidized	S5 imaginal disc	S11 2-6h #2 (9)	GSM467730 r2d2	SRR001346 ago2 beta-eliminated	S3 male body	SRR032096 AGO2 IP dcr2 knockdown	S18 3rd inster #2	S25 1st instar #1	S2 female head	S26 1st instar #2	GSM180331 early embryo (2-6)	SRR029029 dcr-1 knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180329 adult bodies (female bodies, male bodies)	S20 2-4day pupae#2	GSM239052 S2 cells, non beta-eliminated	GSM180335 imaginal discs	GSM180334 larvae: 1st instar and 3rd instars	SRR001348 ago2 oxidized	GSM180337 tissue culture cells (S2 only)	GSM467731 loq	SRR001342 WT_males beta-eliminated	GSM280087 S2cell (AGO2IP)	GSM180328 adult heads (female heads, male heads)	GSM180330 very early embryo (0-1)	S1 male head	SRR001340 IR beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM239041 fly heads, non beta-eliminated	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
..AAAAAAATAGAGAAAAGTGTC..............................................................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AGAGAAAAGTGTCACCTCACA......................................................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AAAAGTGTCACCTCACACGATTCTCA.............................................................................................................	26	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AAGTGTCACCTCACACGATTCTCAAA...........................................................................................................	26	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AGTGTCACCTCACACGATTCTCAAA...........................................................................................................	25	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TCACCTCACACGATTCTCAAA...........................................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GAGCTAAGCCTAAATATGAAA.............................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................ACTCGGAATTTCAGTTGGTAT.......................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0