Page generated on Fri Oct 15 12:01:34 2010

dme-mir-284



dme-mir-284

View dme-mir-284 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-284	149	181281	2	2423	52497	3	126338	6	16	33	126338	52497

GTGCTTCGGATAATCGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGGCAAGGCTTGAATAATGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCCGATATTCCTCAACAATGAGAAAACCGG
........................(((((((((.((((((((((((((.(((....((((....))))..(((.........)))........))))))))))))))))).))))))))).............................-41.70
......(((...(((((.......(((((((((.((((((((((((((.(((....((((....))))..(((.........)))........))))))))))))))))).))))))))))))))....((((....))))....))).-52.81
Sense strand

	Size	Blast	Total	SRR029633 total small RNAs from hen1 homozygous flies	S29 male head #1	SRR031692 Total small RNAs from Oregon R	S22 female head #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031696_2152	SRR001349 heterozygous dcr-2_untreated	V098 dcr-2[L811fsX] ovary	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR001338 IR non-beta-eliminated	SRR001347 ago2 untreated	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR001664 homozygous dcr-2_untreated	V097 CS ovary	SRR001345 ago2 non-beta-eliminated	SRR031693_4	S2 female head	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S24 male body #2	S28 0-2d pupae	S19 2-4day pupae #1	V090 CS  male total RNA	V083 male, one day	V082 embryo 14-24hr	V063 CS,ovary,AGO1IP	V064 ago2[414], ovary, AGO1IP	V089 ago2[414] ovary total RNA	S1 male head	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR001343 dcr-2 non-beta-eliminated	S27 0-1d Pupae (w)	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	SRR014273 Ovary_rep1_Har_P	SRR014275 Ovary_rep1 LK_P	S23 female body #2	SRR001344 dcr-2 beta-eliminated	V088 r2d2[1] ovary total RNA	S17 3rd inster #1	S9 0-1h #3 (7)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM180328 adult heads (female heads, male heads)	V084 female, one day	GSM379057 Krimp Mutant	GSM379065 Zuc Heterozygote	GSM467729 WT	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM467730 r2d2	SRR014277 Ovary_rep1 NA_P	GSM379059	GSM379061 Squ Heterozygote	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V001 IR-	V009 CMEL1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379056 Krimp Heterozygote	S3 male body	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379064 Vasa Mutant	V002 IR+	SRR014282 Ovary_rep1 wK_P	GSM379063 Vasa Heterozygote	SRR014280 Ovary_rep1 w1118_P	S35 KC+48 #2	S18 3rd inster #2	V066 r2d2[1], ovary, AGO1IP	GSM379060 SpnE Heterozygote	SRR010960 wt, oxidized	GSM379052 Aub Heterozygote	S32 s2+48 #2	SRR010954 Aub trans-heterozygotes, oxidized	S4 female body	V025 S2R+ cell	SRR010952 Ago3 trans-heterozygotes, oxidized	S21 disk #2	V020 S2R+ cell	GSM239050 fly heads, beta-eliminated	GSM379067 SpnE Mutant	V075 ML-DmBG1-C1	GSM379053 Aub Mutant	GSM379051 Armi Mutant	S20 2-4day pupae#2	GSM379066 Zuc Mutant	SRR001337 WT_females beta-eliminated	GSM379050 Armi Heterozygote	GSM379054 Flam Heterozygote	S34 KC+48 #1	GSM379058	S7 12-24hr embryo	S25 1st instar #1	S5 imaginal disc	SRR010953 Aub heterozygotes, oxidized	SRR029028 untreated (mock)	SRR010951 Ago3 heterozygotes, oxidized	V008 S2-DRSC	S10 2-6h #1 (8)	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379055 Flam Mutant	GSM467731 loq	SRR001340 IR beta-eliminated	SRR001346 ago2 beta-eliminated	GSM379062 Squ Mutant	GSM246084 D. melanogaster adult male heads 454	GSM239051 S2 cells, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	SRR029030 dcr-2 knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM280084 loqs-/- ovaries (18-29nt)	S26 1st instar #2	V067 S2-NP	V010 MLDmD20c5	SRR010955 Aub IP in Ago3 heterozygotes	V076 ML-DmBG3-C2	GSM180333 late embryo (12-24)	GSM180334 larvae: 1st instar and 3rd instars	V026 1182-4H cell	GSM280082 WT ovaries (18-29nt)	GSM180329 adult bodies (female bodies, male bodies)	GSM239041 fly heads, non beta-eliminated	GSM280085 WT testes (18-24nt)	S13 6-10h #2 (11)	S12 6-10h #1 (10)	SRR010956 Piwi IP in Ago3 heterozygotes	S33 KC-48 #2	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR029033 lacZ knockdown	SRR032092 mock oxidized	V081 embryo 2-6hr	V019 GM2 cell	S8 S2-48,+48, KC-48, +48 mix	S30 s2-48 #2	SRR032095 AGO1 IP dcr2 knockdown	S31 s2+48 #1	SRR001342 WT_males beta-eliminated	SRR029032 r2d2 knockdown	SRR032093 ago1 knockdown	GSM239052 S2 cells, non beta-eliminated	V033 CMEW1 Cl.8+ cell	GSM280087 S2cell (AGO2IP)	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V011 Sg4	SRR032094 ago2 knockdown	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S16 KC -48 #1	GSM180335 imaginal discs	V021 ML-DmD21 cell	S14 0-1hr #1 (A)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR029029 dcr-1 knockdown	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V024 kc167 cell	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS2 Drosophila OSS cell small RNA libraries, rep1	V018 Kc167 cell	GSM180332 mid embryo (6-10)	SRR029031 loqs-ORF knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	GSM280088 S2cell (AGO1IP)	SRR032096 AGO2 IP dcr2 knockdown	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	V028 CMEW1 Cl.8+ cell	GSM180331 early embryo (2-6)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2
..GCTTCGGATAATCGGTGATTG..............................................................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CGGATAATCGGTGATTGCGTTGCAGTT....................................................................................................................	27	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TAATCGGTGATTGCGTTGCAGTT....................................................................................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AATCGGTGATTGCGTTGCAGTT....................................................................................................................	22	1	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATCGGTGATTGCGTTGCAGTT....................................................................................................................	21	1	11	3	0	0	0	1	0	0	0	0	0	2	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TCGGTGATTGCGTTGCAGT.....................................................................................................................	19	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TCGGTGATTGCGTTGCAGTT....................................................................................................................	20	1	97	5	0	2	1	0	3	0	2	0	0	26	0	0	1	0	0	12	1	0	0	0	0	0	0	2	0	2	0	0	4	0	0	1	0	0	1	1	0	0	0	1	1	5	0	0	0	0	1	0	0	0	0	0	1	1	0	0	2	0	0	1	0	0	2	2	1	2	1	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CGGTGATTGCGTTGCAGT.....................................................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CGGTGATTGCGTTGCAGTT....................................................................................................................	19	1	1679	22	21	7	3	1	73	10	2	0	0	460	2	3	3	0	0	225	3	0	8	0	3	0	1	30	11	50	3	3	170	1	0	1	0	0	3	3	0	21	26	3	2	74	1	0	0	0	13	11	5	1	15	2	16	5	9	42	31	7	11	15	1	11	25	20	7	14	10	0	0	0	10	0	22	2	0	0	2	0	0	4	0	6	1	3	5	0	7	0	18	20	0	7	0	1	1	0	0	0	0	0	6	1	1	0	0	11	0	0	0	4	0	3	1	0	1	0	0	0	0	1	4	0	0	10	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GGTGATTGCGTTGCAGTT....................................................................................................................	18	1	626	7	0	1	1	0	48	1	1	0	1	229	3	0	2	0	0	108	0	0	1	0	0	0	0	12	14	13	0	2	18	0	1	0	0	0	0	0	0	4	7	0	0	21	1	0	0	0	10	0	0	1	7	6	6	2	5	5	7	4	7	3	0	3	5	8	0	4	3	0	0	0	4	0	9	0	0	0	2	0	0	3	0	1	1	1	3	0	1	0	2	2	0	5	2	0	0	0	0	0	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TGCGTTGCAGTTCCTGGA..............................................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................TCAGCAACTTGATTCCAGCAAT...................................	22	1	11	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TCAGCAACTTGATTCCAGCAA....................................	21	1	153	9	4	10	7	21	11	0	24	2	1	2	1	1	1	0	1	0	1	1	4	0	8	2	2	0	0	0	18	1	0	2	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	1	0	0	3	1	0	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CAGCAACTTGATTCCAGC......................................	18	1	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CAGCAACTTGATTCCAGCAA....................................	20	1	91	5	35	1	1	4	0	0	6	4	0	0	0	0	0	0	0	0	1	1	1	0	1	2	7	0	0	0	8	2	0	2	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CAGCAACTTGATTCCAGCA.....................................	19	1	89	3	40	1	6	9	2	0	2	0	1	1	1	0	0	0	0	0	0	0	2	1	1	2	3	0	0	0	4	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................AGCAACTTGATTCCAGCAAT...................................	20	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................AGCAACTTGATTCCAGCA.....................................	18	1	152	19	0	12	0	28	4	9	23	11	0	0	5	5	1	0	1	0	5	7	0	2	0	0	0	0	0	0	3	1	0	0	2	1	0	0	1	1	0	0	1	0	0	1	0	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................AGCAACTTGATTCCAGCAA....................................	19	1	149	25	0	12	0	25	3	3	32	0	0	0	5	3	2	0	0	0	3	1	0	3	0	0	1	0	0	0	14	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	2	0	0	2	0	0	0	1	0	2	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GCAACTTGATTCCAGCAA....................................	18	1	18	1	0	1	0	1	2	0	0	2	2	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GCAACTTGATTCCAGCAATTG.................................	21	1	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GCAACTTGATTCCAGCAATTGC................................	22	1	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TTGCGGCCCGATATTCCT..................	18	1	5	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TTGCGGCCCGATATTCCTCA................	20	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR029633 total small RNAs from hen1 homozygous flies	S29 male head #1	SRR031692 Total small RNAs from Oregon R	S22 female head #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031696_2152	SRR001349 heterozygous dcr-2_untreated	V098 dcr-2[L811fsX] ovary	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR001338 IR non-beta-eliminated	SRR001347 ago2 untreated	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR001664 homozygous dcr-2_untreated	V097 CS ovary	SRR001345 ago2 non-beta-eliminated	SRR031693_4	S2 female head	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S24 male body #2	S28 0-2d pupae	S19 2-4day pupae #1	V090 CS  male total RNA	V083 male, one day	V082 embryo 14-24hr	V063 CS,ovary,AGO1IP	V064 ago2[414], ovary, AGO1IP	V089 ago2[414] ovary total RNA	S1 male head	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR001343 dcr-2 non-beta-eliminated	S27 0-1d Pupae (w)	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	SRR014273 Ovary_rep1_Har_P	SRR014275 Ovary_rep1 LK_P	S23 female body #2	SRR001344 dcr-2 beta-eliminated	V088 r2d2[1] ovary total RNA	S17 3rd inster #1	S9 0-1h #3 (7)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM180328 adult heads (female heads, male heads)	V084 female, one day	GSM379057 Krimp Mutant	GSM379065 Zuc Heterozygote	GSM467729 WT	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM467730 r2d2	SRR014277 Ovary_rep1 NA_P	GSM379059	GSM379061 Squ Heterozygote	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V001 IR-	V009 CMEL1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379056 Krimp Heterozygote	S3 male body	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379064 Vasa Mutant	V002 IR+	SRR014282 Ovary_rep1 wK_P	GSM379063 Vasa Heterozygote	SRR014280 Ovary_rep1 w1118_P	S35 KC+48 #2	S18 3rd inster #2	V066 r2d2[1], ovary, AGO1IP	GSM379060 SpnE Heterozygote	SRR010960 wt, oxidized	GSM379052 Aub Heterozygote	S32 s2+48 #2	SRR010954 Aub trans-heterozygotes, oxidized	S4 female body	V025 S2R+ cell	SRR010952 Ago3 trans-heterozygotes, oxidized	S21 disk #2	V020 S2R+ cell	GSM239050 fly heads, beta-eliminated	GSM379067 SpnE Mutant	V075 ML-DmBG1-C1	GSM379053 Aub Mutant	GSM379051 Armi Mutant	S20 2-4day pupae#2	GSM379066 Zuc Mutant	SRR001337 WT_females beta-eliminated	GSM379050 Armi Heterozygote	GSM379054 Flam Heterozygote	S34 KC+48 #1	GSM379058	S7 12-24hr embryo	S25 1st instar #1	S5 imaginal disc	SRR010953 Aub heterozygotes, oxidized	SRR029028 untreated (mock)	SRR010951 Ago3 heterozygotes, oxidized	V008 S2-DRSC	S10 2-6h #1 (8)	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379055 Flam Mutant	GSM467731 loq	SRR001340 IR beta-eliminated	SRR001346 ago2 beta-eliminated	GSM379062 Squ Mutant	GSM246084 D. melanogaster adult male heads 454	GSM239051 S2 cells, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	SRR029030 dcr-2 knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM280084 loqs-/- ovaries (18-29nt)	S26 1st instar #2	V067 S2-NP	V010 MLDmD20c5	SRR010955 Aub IP in Ago3 heterozygotes	V076 ML-DmBG3-C2	GSM180333 late embryo (12-24)	GSM180334 larvae: 1st instar and 3rd instars	V026 1182-4H cell	GSM280082 WT ovaries (18-29nt)	GSM180329 adult bodies (female bodies, male bodies)	GSM239041 fly heads, non beta-eliminated	GSM280085 WT testes (18-24nt)	S13 6-10h #2 (11)	S12 6-10h #1 (10)	SRR010956 Piwi IP in Ago3 heterozygotes	S33 KC-48 #2	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR029033 lacZ knockdown	SRR032092 mock oxidized	V081 embryo 2-6hr	V019 GM2 cell	S8 S2-48,+48, KC-48, +48 mix	S30 s2-48 #2	SRR032095 AGO1 IP dcr2 knockdown	S31 s2+48 #1	SRR001342 WT_males beta-eliminated	SRR029032 r2d2 knockdown	SRR032093 ago1 knockdown	GSM239052 S2 cells, non beta-eliminated	V033 CMEW1 Cl.8+ cell	GSM280087 S2cell (AGO2IP)	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V011 Sg4	SRR032094 ago2 knockdown	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S16 KC -48 #1	GSM180335 imaginal discs	V021 ML-DmD21 cell	S14 0-1hr #1 (A)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR029029 dcr-1 knockdown	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V024 kc167 cell	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS2 Drosophila OSS cell small RNA libraries, rep1	V018 Kc167 cell	GSM180332 mid embryo (6-10)	SRR029031 loqs-ORF knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	GSM280088 S2cell (AGO1IP)	SRR032096 AGO2 IP dcr2 knockdown	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	V028 CMEW1 Cl.8+ cell	GSM180331 early embryo (2-6)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2
......................................AATTAAGTTGACTGTGTAGCC..........................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TAATGCTCCTGAAGTCAG.....................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0