Page generated on Fri Oct 15 12:01:33 2010

dme-mir-285



dme-mir-285

View dme-mir-285 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-285	148	231410			9288	83	221961		78	28	221961	9288

GAGCTACCTACTTGCCCTGCCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATCAGGAGAACCCACTCAATTTAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAGTGTCAAATCGAAGC
........................((..(((((((.(((((..((((.((((((.((((......(((......)))........)))))))))).))))..)))))..)))))))..))............................-34.54
.................((.(((((((.(((((((.(((((..((((.((((((.((((......(((......)))........)))))))))).))))..)))))..)))))))..((.....))..))))))).)).........-42.94
Sense strand

	Size	Blast	Total	S29 male head #1	S22 female head #1	S2 female head	SRR031696_2152	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031701 Total small RNAs from r2d2 heterozygous flies	S1 male head	SRR031692 Total small RNAs from Oregon R	SRR001349 heterozygous dcr-2_untreated	GSM180328 adult heads (female heads, male heads)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V090 CS  male total RNA	SRR001347 ago2 untreated	SRR001345 ago2 non-beta-eliminated	V083 male, one day	GSM239041 fly heads, non beta-eliminated	SRR001664 homozygous dcr-2_untreated	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR001338 IR non-beta-eliminated	SRR031693_4	GSM467729 WT	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	V084 female, one day	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM467730 r2d2	SRR001343 dcr-2 non-beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR001344 dcr-2 beta-eliminated	GSM239052 S2 cells, non beta-eliminated	S28 0-2d pupae	V008 S2-DRSC	S24 male body #2	SRR001348 ago2 oxidized	S23 female body #2	S32 s2+48 #2	S20 2-4day pupae#2	S27 0-1d Pupae (w)	S18 3rd inster #2	GSM239050 fly heads, beta-eliminated	GSM246084 D. melanogaster adult male heads 454	S9 0-1h #3 (7)	SRR001337 WT_females beta-eliminated	S34 KC+48 #1	S4 female body	GSM467731 loq	S33 KC-48 #2	S3 male body	S10 2-6h #1 (8)	S35 KC+48 #2	GSM239051 S2 cells, beta-eliminated	V076 ML-DmBG3-C2	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR001346 ago2 beta-eliminated	GSM280087 S2cell (AGO2IP)	V011 Sg4	OSS8 Drosophila OSS cell small RNA libraries, rep4	S21 disk #2	S19 2-4day pupae #1	SRR001340 IR beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	S30 s2-48 #2	V081 embryo 2-6hr	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR029033 lacZ knockdown	S25 1st instar #1	S7 12-24hr embryo	S8 S2-48,+48, KC-48, +48 mix	S5 imaginal disc	S12 6-10h #1 (10)	S13 6-10h #2 (11)	GSM180334 larvae: 1st instar and 3rd instars	SRR001342 WT_males beta-eliminated	SRR032094 ago2 knockdown	V002 IR+	V098 dcr-2[L811fsX] ovary	SRR032092 mock oxidized	V082 embryo 14-24hr	SRR029032 r2d2 knockdown	V001 IR-	S17 3rd inster #1	GSM180333 late embryo (12-24)	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	S31 s2+48 #1	GSM280088 S2cell (AGO1IP)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S26 1st instar #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM180335 imaginal discs	V088 r2d2[1] ovary total RNA	V010 MLDmD20c5	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V089 ago2[414] ovary total RNA	V028 CMEW1 Cl.8+ cell	V021 ML-DmD21 cell	V075 ML-DmBG1-C1	GSM343287 Drosophila Toll 10b mutant embryos	GSM379059	SRR032093 ago1 knockdown	V033 CMEW1 Cl.8+ cell	GSM379057 Krimp Mutant	GSM379067 SpnE Mutant	GSM379058	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	V018 Kc167 cell	SRR014282 Ovary_rep1 wK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	V009 CMEL1	S16 KC -48 #1	V063 CS,ovary,AGO1IP	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	GSM379065 Zuc Heterozygote	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM379050 Armi Heterozygote	GSM379056 Krimp Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR023197 RNA Library from S2 control cells	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	GSM379063 Vasa Heterozygote	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	V066 r2d2[1], ovary, AGO1IP	GSM280084 loqs-/- ovaries (18-29nt)	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	SRR014273 Ovary_rep1_Har_P	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM379064 Vasa Mutant	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM379053 Aub Mutant	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	SRR010959 Ago3 IP in heterozygotes	SRR014280 Ovary_rep1 w1118_P	V026 1182-4H cell	GSM180331 early embryo (2-6)	V097 CS ovary	SRR014277 Ovary_rep1 NA_P	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM379051 Armi Mutant	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379062 Squ Mutant	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379061 Squ Heterozygote	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM379060 SpnE Heterozygote	SRR029030 dcr-2 knockdown	GSM424739 S2 parental	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR029028 untreated (mock)	V024 kc167 cell	GSM280085 WT testes (18-24nt)	SRR010951 Ago3 heterozygotes, oxidized	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379066 Zuc Mutant	SRR010953 Aub heterozygotes, oxidized	V064 ago2[414], ovary, AGO1IP
................................AAGAACTGAGATCGATTGGTGCAT............................................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AACTGAGATCGATTGGTGCATAGA.........................................................................................	24	1	137	11	2	1	6	5	2	12	13	9	0	11	0	1	0	2	0	2	37	0	1	0	4	0	1	1	1	11	2	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AACTGAGATCGATTGGTGCATA...........................................................................................	22	1	43	8	0	0	0	1	0	2	2	2	0	1	0	0	0	1	1	6	6	0	1	1	1	1	1	0	0	2	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AACTGAGATCGATTGGTGCA.............................................................................................	20	1	13	0	0	0	4	0	0	4	0	0	0	0	0	1	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AACTGAGATCGATTGGTGC..............................................................................................	19	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AACTGAGATCGATTGGTGCATAG..........................................................................................	23	1	167	18	13	1	4	1	3	7	15	5	0	19	0	3	0	4	0	1	34	0	1	0	3	0	7	0	0	22	3	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AACTGAGATCGATTGGTGCAT............................................................................................	21	1	389	76	22	5	31	15	12	43	32	19	1	21	1	2	0	54	3	6	23	0	2	0	6	0	0	0	0	4	0	2	1	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AACTGAGATCGATTGGTGCATAGAT........................................................................................	25	1	3	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................ACTGAGATCGATTGGTGCATAG..........................................................................................	22	1	2308	410	96	60	52	41	49	164	171	96	32	101	1	13	250	67	6	8	250	1	2	23	40	22	17	1	1	150	98	11	8	10	1	4	13	0	0	0	2	1	5	9	4	1	5	0	0	0	0	1	0	1	0	0	0	5	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................ACTGAGATCGATTGGTGCA.............................................................................................	19	1	104	2	3	0	0	3	2	55	5	3	1	3	0	0	9	3	2	0	3	0	0	2	0	0	0	0	0	1	3	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................ACTGAGATCGATTGGTGCATA...........................................................................................	21	1	844	96	58	17	11	8	15	26	47	36	8	37	2	5	116	10	3	22	44	0	3	67	12	60	1	8	8	36	39	0	3	21	5	0	3	0	0	0	1	1	3	1	1	0	1	0	3	0	0	0	0	1	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................ACTGAGATCGATTGGTGCATAGAT........................................................................................	24	1	40	0	0	0	4	1	1	2	2	2	0	0	0	0	3	1	0	2	1	0	0	2	3	0	2	0	0	0	5	1	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................GCACCATTCGAAATCAGT.........................................	18	1	9	3	2	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................GCACCATTCGAAATCAGTGCTT.....................................	22	1	10	1	5	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GCACCATTCGAAATCAGTGCT......................................	21	1	879	592	122	84	4	2	6	1	0	1	20	4	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	4	2	0	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GCACCATTCGAAATCAGTG........................................	19	1	45	16	11	1	6	0	2	1	3	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CACCATTCGAAATCAGTGCT......................................	20	1	25	13	1	0	1	0	2	4	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CACCATTCGAAATCAGTG........................................	18	1	159	17	3	0	15	30	31	15	8	3	0	5	1	0	0	0	0	1	0	0	1	19	1	6	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CACCATTCGAAATCAGTGC.......................................	19	1	18	0	0	1	1	5	4	2	0	1	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CACCATTCGAAATCAGTGCTT.....................................	21	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................ACCATTCGAAATCAGTGCTT.....................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................ACCATTCGAAATCAGTGCT......................................	19	1	54	0	0	1	4	15	16	7	0	0	0	4	1	0	0	0	2	0	1	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................ACCATTCGAAATCAGTGC.......................................	18	1	38	0	0	0	1	10	3	11	0	0	1	2	0	0	0	0	1	0	0	0	1	0	0	1	0	2	2	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................CCATTCGAAATCAGTGCT......................................	18	1	9	0	0	0	0	0	1	3	0	0	1	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	S29 male head #1	S22 female head #1	S2 female head	SRR031696_2152	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031701 Total small RNAs from r2d2 heterozygous flies	S1 male head	SRR031692 Total small RNAs from Oregon R	SRR001349 heterozygous dcr-2_untreated	GSM180328 adult heads (female heads, male heads)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V090 CS  male total RNA	SRR001347 ago2 untreated	SRR001345 ago2 non-beta-eliminated	V083 male, one day	GSM239041 fly heads, non beta-eliminated	SRR001664 homozygous dcr-2_untreated	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR001338 IR non-beta-eliminated	SRR031693_4	GSM467729 WT	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	V084 female, one day	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM467730 r2d2	SRR001343 dcr-2 non-beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR001344 dcr-2 beta-eliminated	GSM239052 S2 cells, non beta-eliminated	S28 0-2d pupae	V008 S2-DRSC	S24 male body #2	SRR001348 ago2 oxidized	S23 female body #2	S32 s2+48 #2	S20 2-4day pupae#2	S27 0-1d Pupae (w)	S18 3rd inster #2	GSM239050 fly heads, beta-eliminated	GSM246084 D. melanogaster adult male heads 454	S9 0-1h #3 (7)	SRR001337 WT_females beta-eliminated	S34 KC+48 #1	S4 female body	GSM467731 loq	S33 KC-48 #2	S3 male body	S10 2-6h #1 (8)	S35 KC+48 #2	GSM239051 S2 cells, beta-eliminated	V076 ML-DmBG3-C2	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR001346 ago2 beta-eliminated	GSM280087 S2cell (AGO2IP)	V011 Sg4	OSS8 Drosophila OSS cell small RNA libraries, rep4	S21 disk #2	S19 2-4day pupae #1	SRR001340 IR beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	S30 s2-48 #2	V081 embryo 2-6hr	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR029033 lacZ knockdown	S25 1st instar #1	S7 12-24hr embryo	S8 S2-48,+48, KC-48, +48 mix	S5 imaginal disc	S12 6-10h #1 (10)	S13 6-10h #2 (11)	GSM180334 larvae: 1st instar and 3rd instars	SRR001342 WT_males beta-eliminated	SRR032094 ago2 knockdown	V002 IR+	V098 dcr-2[L811fsX] ovary	SRR032092 mock oxidized	V082 embryo 14-24hr	SRR029032 r2d2 knockdown	V001 IR-	S17 3rd inster #1	GSM180333 late embryo (12-24)	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	S31 s2+48 #1	GSM280088 S2cell (AGO1IP)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S26 1st instar #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM180335 imaginal discs	V088 r2d2[1] ovary total RNA	V010 MLDmD20c5	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V089 ago2[414] ovary total RNA	V028 CMEW1 Cl.8+ cell	V021 ML-DmD21 cell	V075 ML-DmBG1-C1	GSM343287 Drosophila Toll 10b mutant embryos	GSM379059	SRR032093 ago1 knockdown	V033 CMEW1 Cl.8+ cell	GSM379057 Krimp Mutant	GSM379067 SpnE Mutant	GSM379058	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	V018 Kc167 cell	SRR014282 Ovary_rep1 wK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	V009 CMEL1	S16 KC -48 #1	V063 CS,ovary,AGO1IP	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	GSM379065 Zuc Heterozygote	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM379050 Armi Heterozygote	GSM379056 Krimp Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR023197 RNA Library from S2 control cells	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	GSM379063 Vasa Heterozygote	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	V066 r2d2[1], ovary, AGO1IP	GSM280084 loqs-/- ovaries (18-29nt)	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	SRR014273 Ovary_rep1_Har_P	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM379064 Vasa Mutant	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM379053 Aub Mutant	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	SRR010959 Ago3 IP in heterozygotes	SRR014280 Ovary_rep1 w1118_P	V026 1182-4H cell	GSM180331 early embryo (2-6)	V097 CS ovary	SRR014277 Ovary_rep1 NA_P	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM379051 Armi Mutant	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379062 Squ Mutant	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379061 Squ Heterozygote	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM379060 SpnE Heterozygote	SRR029030 dcr-2 knockdown	GSM424739 S2 parental	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR029028 untreated (mock)	V024 kc167 cell	GSM280085 WT testes (18-24nt)	SRR010951 Ago3 heterozygotes, oxidized	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379066 Zuc Mutant	SRR010953 Aub heterozygotes, oxidized	V064 ago2[414], ovary, AGO1IP