Page generated on Fri Oct 15 12:01:26 2010

dme-mir-286



dme-mir-286

View dme-mir-286 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-286	149	578253	2	11	53458	457	524314		15	30	524314	53458

TAAGTGATATTGGGCACTCCAGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAAGAAAGGTTTCGATTAAGCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCTCAGTAAAGTTGCG
........................(((((((((....((((.(((((((.(((((.(((((.....))))).(((((......))))).))))).)))).))).))))....)))))))))............................-27.30
...(..((((((((((.....((((((((((((....((((.(((((((.(((((.(((((.....))))).(((((......))))).))))).)))).))).))))....))))))))))))........))))))))...))..).-40.72
Sense strand

	Size	Blast	Total	V081 embryo 2-6hr	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S10 2-6h #1 (8)	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S13 6-10h #2 (11)	S12 6-10h #1 (10)	S14 0-1hr #1 (A)	V082 embryo 14-24hr	S11 2-6h #2 (9)	V002 IR+	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	V001 IR-	S9 0-1h #3 (7)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S34 KC+48 #1	GSM180331 early embryo (2-6)	S33 KC-48 #2	S7 12-24hr embryo	GSM180332 mid embryo (6-10)	GSM180330 very early embryo (0-1)	S29 male head #1	GSM180333 late embryo (12-24)	S25 1st instar #1	S26 1st instar #2	SRR031696_2152	SRR014273 Ovary_rep1_Har_P	S28 0-2d pupae	S2 female head	S22 female head #1	SRR029633 total small RNAs from hen1 homozygous flies	SRR001345 ago2 non-beta-eliminated	S30 s2-48 #2	S32 s2+48 #2	S27 0-1d Pupae (w)	SRR014280 Ovary_rep1 w1118_P	S35 KC+48 #2	S31 s2+48 #1	GSM379059	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM467729 WT	S8 S2-48,+48, KC-48, +48 mix	V063 CS,ovary,AGO1IP	S15 S2 -48 #1	V066 r2d2[1], ovary, AGO1IP	V011 Sg4	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379065 Zuc Heterozygote	GSM379051 Armi Mutant	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	V064 ago2[414], ovary, AGO1IP	V098 dcr-2[L811fsX] ovary	SRR031692 Total small RNAs from Oregon R	V009 CMEL1	S18 3rd inster #2	V021 ML-DmD21 cell	SRR029032 r2d2 knockdown	SRR031699 Total small RNAs from dcr-2 homozygous flies	GSM379053 Aub Mutant	GSM379057 Krimp Mutant	S19 2-4day pupae #1	GSM180328 adult heads (female heads, male heads)	V075 ML-DmBG1-C1	V089 ago2[414] ovary total RNA	V019 GM2 cell	V033 CMEW1 Cl.8+ cell	V018 Kc167 cell	SRR001338 IR non-beta-eliminated	V084 female, one day	S23 female body #2	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014277 Ovary_rep1 NA_P	GSM379060 SpnE Heterozygote	V083 male, one day	GSM379067 SpnE Mutant	SRR001343 dcr-2 non-beta-eliminated	V097 CS ovary	SRR029028 untreated (mock)	S16 KC -48 #1	SRR014282 Ovary_rep1 wK_P	SRR023197 RNA Library from S2 control cells	SRR032094 ago2 knockdown	V088 r2d2[1] ovary total RNA	GSM379050 Armi Heterozygote	SRR001349 heterozygous dcr-2_untreated	SRR032095 AGO1 IP dcr2 knockdown	SRR001344 dcr-2 beta-eliminated	S20 2-4day pupae#2	SRR010958 Piwi IP in Ago3 trans-heterozygotes	V067 S2-NP	GSM280087 S2cell (AGO2IP)	SRR032092 mock oxidized	SRR031703 Total small RNAs from r2d2 homozygous flies	V026 1182-4H cell	S24 male body #2	V010 MLDmD20c5	V024 kc167 cell	V008 S2-DRSC	S4 female body	V076 ML-DmBG3-C2	GSM180334 larvae: 1st instar and 3rd instars	S17 3rd inster #1	SRR001347 ago2 untreated	V090 CS  male total RNA	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S5 imaginal disc	V025 S2R+ cell	GSM379056 Krimp Heterozygote	GSM379064 Vasa Mutant	GSM379058	SRR029031 loqs-ORF knockdown	V020 S2R+ cell	GSM280084 loqs-/- ovaries (18-29nt)	OSS2 Drosophila OSS cell small RNA libraries, rep1	V028 CMEW1 Cl.8+ cell	SRR029030 dcr-2 knockdown	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S1 male head	SRR029029 dcr-1 knockdown	GSM467730 r2d2	GSM180329 adult bodies (female bodies, male bodies)	SRR001337 WT_females beta-eliminated	GSM280088 S2cell (AGO1IP)	OSS7 Drosophila OSS cell small RNA libraries, rep3	S21 disk #2	SRR031701 Total small RNAs from r2d2 heterozygous flies	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR032093 ago1 knockdown	SRR001346 ago2 beta-eliminated	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM379054 Flam Heterozygote	SRR014275 Ovary_rep1 LK_P	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379061 Squ Heterozygote	SRR023399 RNA bound by P19 protein	GSM379066 Zuc Mutant	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM379052 Aub Heterozygote	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	SRR010953 Aub heterozygotes, oxidized	GSM180335 imaginal discs	SRR023400 total RNA extracted from P19 cells	GSM379063 Vasa Heterozygote	GSM180337 tissue culture cells (S2 only)	GSM379055 Flam Mutant	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S3 male body	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM379062 Squ Mutant	SRR001664 homozygous dcr-2_untreated	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR031693_4	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM280082 WT ovaries (18-29nt)	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	GSM280085 WT testes (18-24nt)	SRR010951 Ago3 heterozygotes, oxidized
....TGATATTGGGCACTCCAGT..............................................................................................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GGGCACTCCAGTTTTAAAATTGA...................................................................................................................	23	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ACTCCAGTTTTAAAATTGAAT.................................................................................................................	21	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTCCAGTTTTAAAATTGAAT.................................................................................................................	20	1	3	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TCCAGTTTTAAAATTGAAT.................................................................................................................	19	1	4	1	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CCAGTTTTAAAATTGAAT.................................................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GAATGGCGAATGTCGGTATGG................................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AATGGCGAATGTCGGTATGGTC..............................................................................................	22	1	8	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATGGCGAATGTCGGTATGGT...............................................................................................	20	1	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATGGCGAATGTCGGTATGGTCT.............................................................................................	22	1	11	6	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATGGCGAATGTCGGTATGGTC..............................................................................................	21	1	123	80	8	2	6	5	2	3	0	9	0	2	1	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATGGCGAATGTCGGTATGGTCTCT...........................................................................................	24	1	4	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................GACTAGACCGAACACTCGTG........................................	20	1	8	0	0	0	0	0	0	1	0	0	0	0	0	5	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................ACTAGACCGAACACTCGTG........................................	19	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................ACTAGACCGAACACTCGTGCT......................................	21	1	147	70	1	9	9	4	7	3	2	16	0	7	5	0	6	3	0	0	0	0	1	1	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................ACTAGACCGAACACTCGTGCTA.....................................	22	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................ACTAGACCGAACACTCGT.........................................	18	1	11	1	0	0	0	0	0	0	0	8	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................ACTAGACCGAACACTCGTGCTAT....................................	23	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................ACTAGACCGAACACTCGTGC.......................................	20	1	9	3	0	2	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CTAGACCGAACACTCGTGCTAT....................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CTAGACCGAACACTCGTGCT......................................	20	1	116	26	11	9	11	15	4	8	1	4	2	6	1	2	3	3	7	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CTAGACCGAACACTCGTGC.......................................	19	1	8	0	0	3	0	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TAGACCGAACACTCGTGCT......................................	19	1	136	33	8	20	13	16	10	16	0	1	0	5	3	0	5	0	0	0	0	0	0	0	0	0	0	1	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TAGACCGAACACTCGTGCTA.....................................	20	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TAGACCGAACACTCGTGC.......................................	18	1	6	0	0	0	0	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................AGACCGAACACTCGTGCT......................................	18	1	95	16	0	25	10	10	1	4	1	2	3	2	8	0	3	0	1	0	0	0	1	0	0	0	0	1	4	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GACCGAACACTCGTGCTAT....................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................ACCGAACACTCGTGCTAT....................................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V081 embryo 2-6hr	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S10 2-6h #1 (8)	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S13 6-10h #2 (11)	S12 6-10h #1 (10)	S14 0-1hr #1 (A)	V082 embryo 14-24hr	S11 2-6h #2 (9)	V002 IR+	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	V001 IR-	S9 0-1h #3 (7)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S34 KC+48 #1	GSM180331 early embryo (2-6)	S33 KC-48 #2	S7 12-24hr embryo	GSM180332 mid embryo (6-10)	GSM180330 very early embryo (0-1)	S29 male head #1	GSM180333 late embryo (12-24)	S25 1st instar #1	S26 1st instar #2	SRR031696_2152	SRR014273 Ovary_rep1_Har_P	S28 0-2d pupae	S2 female head	S22 female head #1	SRR029633 total small RNAs from hen1 homozygous flies	SRR001345 ago2 non-beta-eliminated	S30 s2-48 #2	S32 s2+48 #2	S27 0-1d Pupae (w)	SRR014280 Ovary_rep1 w1118_P	S35 KC+48 #2	S31 s2+48 #1	GSM379059	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM467729 WT	S8 S2-48,+48, KC-48, +48 mix	V063 CS,ovary,AGO1IP	S15 S2 -48 #1	V066 r2d2[1], ovary, AGO1IP	V011 Sg4	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379065 Zuc Heterozygote	GSM379051 Armi Mutant	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	V064 ago2[414], ovary, AGO1IP	V098 dcr-2[L811fsX] ovary	SRR031692 Total small RNAs from Oregon R	V009 CMEL1	S18 3rd inster #2	V021 ML-DmD21 cell	SRR029032 r2d2 knockdown	SRR031699 Total small RNAs from dcr-2 homozygous flies	GSM379053 Aub Mutant	GSM379057 Krimp Mutant	S19 2-4day pupae #1	GSM180328 adult heads (female heads, male heads)	V075 ML-DmBG1-C1	V089 ago2[414] ovary total RNA	V019 GM2 cell	V033 CMEW1 Cl.8+ cell	V018 Kc167 cell	SRR001338 IR non-beta-eliminated	V084 female, one day	S23 female body #2	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014277 Ovary_rep1 NA_P	GSM379060 SpnE Heterozygote	V083 male, one day	GSM379067 SpnE Mutant	SRR001343 dcr-2 non-beta-eliminated	V097 CS ovary	SRR029028 untreated (mock)	S16 KC -48 #1	SRR014282 Ovary_rep1 wK_P	SRR023197 RNA Library from S2 control cells	SRR032094 ago2 knockdown	V088 r2d2[1] ovary total RNA	GSM379050 Armi Heterozygote	SRR001349 heterozygous dcr-2_untreated	SRR032095 AGO1 IP dcr2 knockdown	SRR001344 dcr-2 beta-eliminated	S20 2-4day pupae#2	SRR010958 Piwi IP in Ago3 trans-heterozygotes	V067 S2-NP	GSM280087 S2cell (AGO2IP)	SRR032092 mock oxidized	SRR031703 Total small RNAs from r2d2 homozygous flies	V026 1182-4H cell	S24 male body #2	V010 MLDmD20c5	V024 kc167 cell	V008 S2-DRSC	S4 female body	V076 ML-DmBG3-C2	GSM180334 larvae: 1st instar and 3rd instars	S17 3rd inster #1	SRR001347 ago2 untreated	V090 CS  male total RNA	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S5 imaginal disc	V025 S2R+ cell	GSM379056 Krimp Heterozygote	GSM379064 Vasa Mutant	GSM379058	SRR029031 loqs-ORF knockdown	V020 S2R+ cell	GSM280084 loqs-/- ovaries (18-29nt)	OSS2 Drosophila OSS cell small RNA libraries, rep1	V028 CMEW1 Cl.8+ cell	SRR029030 dcr-2 knockdown	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S1 male head	SRR029029 dcr-1 knockdown	GSM467730 r2d2	GSM180329 adult bodies (female bodies, male bodies)	SRR001337 WT_females beta-eliminated	GSM280088 S2cell (AGO1IP)	OSS7 Drosophila OSS cell small RNA libraries, rep3	S21 disk #2	SRR031701 Total small RNAs from r2d2 heterozygous flies	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR032093 ago1 knockdown	SRR001346 ago2 beta-eliminated	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM379054 Flam Heterozygote	SRR014275 Ovary_rep1 LK_P	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379061 Squ Heterozygote	SRR023399 RNA bound by P19 protein	GSM379066 Zuc Mutant	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM379052 Aub Heterozygote	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	SRR010953 Aub heterozygotes, oxidized	GSM180335 imaginal discs	SRR023400 total RNA extracted from P19 cells	GSM379063 Vasa Heterozygote	GSM180337 tissue culture cells (S2 only)	GSM379055 Flam Mutant	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S3 male body	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM379062 Squ Mutant	SRR001664 homozygous dcr-2_untreated	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR031693_4	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM280082 WT ovaries (18-29nt)	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	GSM280085 WT testes (18-24nt)	SRR010951 Ago3 heterozygotes, oxidized
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