Page generated on Fri Oct 15 12:01:40 2010

dme-mir-2c



dme-mir-2c

View dme-mir-2c on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-2c	151	84743	1	1	5454	67	78845		377	18	78845	5454

TGGTGTGTGTGCGTCGACGTTACCTCGTATCTTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATGAGCAGCGATAGCAAAATGTGACCCGTGGCGTGA
........................((((..((((.((.(((((((((((((...(((((.(((((....))))).....(((......))))))))...)))))).))))))).))))))..)))).........................-28.60
..........((((((..(((((.((((..((((.((.(((((((((((((...(((((.(((((....))))).....(((......))))))))...)))))).))))))).))))))..)))).........)))))...))))))..-38.40
Sense strand

	Size	Blast	Total	S29 male head #1	SRR031696_2152	S33 KC-48 #2	SRR010954 Aub trans-heterozygotes, oxidized	V008 S2-DRSC	SRR010953 Aub heterozygotes, oxidized	S32 s2+48 #2	V076 ML-DmBG3-C2	SRR031699 Total small RNAs from dcr-2 homozygous flies	S22 female head #1	SRR032095 AGO1 IP dcr2 knockdown	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM343287 Drosophila Toll 10b mutant embryos	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	S13 6-10h #2 (11)	SRR031701 Total small RNAs from r2d2 heterozygous flies	S35 KC+48 #2	S12 6-10h #1 (10)	S16 KC -48 #1	V081 embryo 2-6hr	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	S24 male body #2	SRR031692 Total small RNAs from Oregon R	S31 s2+48 #1	OSS7 Drosophila OSS cell small RNA libraries, rep3	S34 KC+48 #1	V082 embryo 14-24hr	S2 female head	V024 kc167 cell	S30 s2-48 #2	S1 male head	SRR001347 ago2 untreated	SRR001338 IR non-beta-eliminated	V019 GM2 cell	SRR001664 homozygous dcr-2_untreated	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S9 0-1h #3 (7)	SRR001349 heterozygous dcr-2_untreated	V018 Kc167 cell	V009 CMEL1	GSM239052 S2 cells, non beta-eliminated	V026 1182-4H cell	S10 2-6h #1 (8)	V021 ML-DmD21 cell	S28 0-2d pupae	V011 Sg4	V002 IR+	V010 MLDmD20c5	V020 S2R+ cell	V001 IR-	S15 S2 -48 #1	V090 CS  male total RNA	GSM280085 WT testes (18-24nt)	S27 0-1d Pupae (w)	SRR001345 ago2 non-beta-eliminated	S23 female body #2	S19 2-4day pupae #1	V025 S2R+ cell	V033 CMEW1 Cl.8+ cell	S8 S2-48,+48, KC-48, +48 mix	GSM239041 fly heads, non beta-eliminated	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR032094 ago2 knockdown	V063 CS,ovary,AGO1IP	S21 disk #2	S7 12-24hr embryo	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR029030 dcr-2 knockdown	SRR001348 ago2 oxidized	S5 imaginal disc	SRR029029 dcr-1 knockdown	V067 S2-NP	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR001343 dcr-2 non-beta-eliminated	GSM280088 S2cell (AGO1IP)	SRR029032 r2d2 knockdown	V098 dcr-2[L811fsX] ovary	SRR029028 untreated (mock)	S3 male body	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR029033 lacZ knockdown	V064 ago2[414], ovary, AGO1IP	S11 2-6h #2 (9)	V083 male, one day	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM180328 adult heads (female heads, male heads)	S14 0-1hr #1 (A)	SRR014275 Ovary_rep1 LK_P	SRR014277 Ovary_rep1 NA_P	SRR001344 dcr-2 beta-eliminated	GSM379059	GSM379057 Krimp Mutant	GSM379052 Aub Heterozygote	V088 r2d2[1] ovary total RNA	V028 CMEW1 Cl.8+ cell	V066 r2d2[1], ovary, AGO1IP	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR032093 ago1 knockdown	SRR029031 loqs-ORF knockdown	S26 1st instar #2	SRR014273 Ovary_rep1_Har_P	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM379064 Vasa Mutant	GSM180332 mid embryo (6-10)	GSM379063 Vasa Heterozygote	GSM379065 Zuc Heterozygote	S17 3rd inster #1	S25 1st instar #1	S4 female body	GSM467729 WT	GSM280083 dcr-2-/- ovaries (18-29nt)	V084 female, one day	GSM379054 Flam Heterozygote	GSM379058	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM424739 S2 parental	GSM379060 SpnE Heterozygote	GSM180333 late embryo (12-24)	GSM280084 loqs-/- ovaries (18-29nt)	GSM379053 Aub Mutant	V097 CS ovary	GSM467730 r2d2	GSM379066 Zuc Mutant	SRR010960 wt, oxidized	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379056 Krimp Heterozygote	GSM379051 Armi Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM379062 Squ Mutant	GSM280082 WT ovaries (18-29nt)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379050 Armi Heterozygote	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S18 3rd inster #2	SRR014282 Ovary_rep1 wK_P	GSM379055 Flam Mutant	V075 ML-DmBG1-C1	V089 ago2[414] ovary total RNA	S20 2-4day pupae#2	SRR031693_4	GSM180331 early embryo (2-6)	GSM180335 imaginal discs	GSM467731 loq	SRR010959 Ago3 IP in heterozygotes	SRR014280 Ovary_rep1 w1118_P	GSM379067 SpnE Mutant	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM180337 tissue culture cells (S2 only)	GSM379061 Squ Heterozygote	GSM424741 S2 pKF63 transiently transfected	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001337 WT_females beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR032096 AGO2 IP dcr2 knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180334 larvae: 1st instar and 3rd instars	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM280087 S2cell (AGO2IP)	SRR023399 RNA bound by P19 protein	GSM239051 S2 cells, beta-eliminated	SRR001340 IR beta-eliminated	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM180330 very early embryo (0-1)	SRR023197 RNA Library from S2 control cells	SRR001342 WT_males beta-eliminated	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR032092 mock oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010958 Piwi IP in Ago3 trans-heterozygotes
...........................................TCATCAAAAAGGGCTGAAGAAAGA....................................................................................	24	1	530	28	20	0	0	0	0	0	0	4	2	0	2	7	4	1	11	12	6	0	32	0	135	0	0	2	2	0	0	2	121	2	0	0	1	4	2	0	1	0	0	5	1	0	0	0	0	4	0	9	0	5	0	0	25	0	2	0	5	4	2	5	0	0	0	0	0	0	0	3	5	5	2	2	0	0	11	0	0	0	0	0	0	0	0	0	5	0	0	0	10	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	1	0	2	0	0	1	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCATCAAAAAGGGCTGAAGAAA......................................................................................	22	1	476	117	23	0	0	0	0	3	0	22	7	0	1	0	16	18	29	3	17	0	13	0	10	0	0	3	33	0	0	0	16	11	0	0	7	12	5	0	4	0	0	11	3	0	0	0	0	5	0	1	0	6	0	0	2	0	4	0	6	3	1	7	0	0	0	0	0	0	0	5	2	0	0	0	0	2	4	0	0	0	1	0	0	1	0	3	0	0	0	0	11	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	2	1	0	0	10	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCATCAAAAAGGGCTGAAGAAAG.....................................................................................	23	1	341	36	3	8	0	0	0	3	0	13	11	0	0	8	9	10	6	2	3	0	23	2	27	0	0	4	12	0	0	0	25	8	0	0	0	2	5	0	3	0	0	0	6	0	0	0	0	7	0	13	0	4	0	0	11	0	3	0	4	10	1	5	0	0	0	0	0	0	0	6	4	0	0	0	0	0	6	0	0	1	6	0	0	0	0	0	2	0	0	1	4	0	1	0	0	0	2	0	0	0	0	0	0	4	0	0	1	0	0	0	0	0	0	0	4	0	0	0	3	0	0	2	0	0	4	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCATCAAAAAGGGCTGAAGAAAGATAT.................................................................................	27	1	24	0	2	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	0	0	2	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCATCAAAAAGGGCTGAAGAAAGATA..................................................................................	26	1	633	13	4	1	0	0	0	0	0	4	5	0	0	0	2	11	6	4	2	1	71	0	275	0	0	0	9	0	0	1	22	4	0	0	2	0	1	0	0	0	0	4	0	0	0	0	0	69	0	13	0	5	0	0	21	0	2	0	4	4	0	3	0	0	0	0	0	0	0	2	2	23	1	1	0	1	3	0	0	0	0	0	0	0	0	0	7	0	0	7	4	0	1	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCATCAAAAAGGGCTGAA..........................................................................................	18	1	29	0	2	0	0	0	0	0	0	1	0	0	3	0	0	0	1	4	2	0	2	0	5	0	0	0	1	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCATCAAAAAGGGCTGAAGAA.......................................................................................	21	1	502	133	22	1	0	0	0	1	0	13	41	0	4	2	22	19	39	1	17	1	1	0	6	0	0	0	21	0	0	0	11	21	0	0	14	12	10	0	10	0	0	5	6	0	0	1	0	0	0	12	0	2	0	0	1	0	9	0	2	4	2	2	0	0	0	0	0	0	0	5	1	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	1	0	0	0	10	0	3	0	0	0	3	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCATCAAAAAGGGCTGAAGA........................................................................................	20	1	696	151	38	0	0	0	0	0	0	22	19	0	11	28	33	15	74	1	42	0	14	0	15	0	0	7	20	0	0	0	15	12	0	0	5	13	13	0	12	0	0	0	13	0	0	0	1	10	0	6	0	7	0	0	8	0	19	0	5	3	2	2	0	0	0	1	0	0	0	1	2	0	3	3	0	2	1	0	0	0	3	0	0	0	0	1	1	0	0	6	12	0	1	0	0	0	1	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	1	1	0	0	10	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCATCAAAAAGGGCTGAAG.........................................................................................	19	1	905	46	84	0	0	0	0	0	1	32	14	0	34	0	44	39	129	8	93	3	6	0	34	0	0	3	35	0	0	0	36	6	0	0	7	19	26	0	17	0	0	0	17	0	0	3	0	6	0	1	0	13	0	0	16	0	60	0	1	4	2	0	0	0	0	4	0	0	0	3	0	0	1	1	0	1	3	0	0	1	4	0	0	0	0	1	2	0	0	0	16	0	0	0	0	0	5	0	0	0	0	0	0	1	0	0	1	0	4	0	0	0	0	1	0	0	0	0	6	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TCATCAAAAAGGGCTGAAGAAAGAT...................................................................................	25	1	1222	70	25	0	0	0	0	2	0	9	10	0	0	9	6	6	17	29	5	0	171	0	394	1	0	2	10	0	1	0	118	5	0	1	2	4	2	0	3	1	1	5	4	0	0	0	0	37	0	28	0	14	0	0	34	0	9	0	13	4	0	9	0	0	0	0	0	0	0	19	21	20	1	1	0	0	24	0	0	2	4	0	0	0	0	0	7	0	0	5	8	0	1	3	0	0	7	0	0	0	0	0	0	0	0	0	3	0	4	0	3	0	0	0	2	2	0	0	5	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	4	1	0	0	0	1	0	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CATCAAAAAGGGCTGAAGAA.......................................................................................	20	1	3	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................ACAGCCAGCTTTGATGGGCA.........................................	20	1	48	0	5	0	0	0	0	0	0	3	0	0	0	0	2	1	2	0	0	0	0	0	8	0	0	0	0	0	1	0	18	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................ACAGCCAGCTTTGATGGG...........................................	18	1	42	0	7	0	0	5	0	0	1	4	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CAGCCAGCTTTGATGGGCAT........................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CAGCCAGCTTTGATGGGCA.........................................	19	1	6	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CAGCCAGCTTTGATGGGC..........................................	18	1	3	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................AGCCAGCTTTGATGGGCAT........................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................AGCCAGCTTTGATGGGCA.........................................	18	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	S29 male head #1	SRR031696_2152	S33 KC-48 #2	SRR010954 Aub trans-heterozygotes, oxidized	V008 S2-DRSC	SRR010953 Aub heterozygotes, oxidized	S32 s2+48 #2	V076 ML-DmBG3-C2	SRR031699 Total small RNAs from dcr-2 homozygous flies	S22 female head #1	SRR032095 AGO1 IP dcr2 knockdown	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM343287 Drosophila Toll 10b mutant embryos	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	S13 6-10h #2 (11)	SRR031701 Total small RNAs from r2d2 heterozygous flies	S35 KC+48 #2	S12 6-10h #1 (10)	S16 KC -48 #1	V081 embryo 2-6hr	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	S24 male body #2	SRR031692 Total small RNAs from Oregon R	S31 s2+48 #1	OSS7 Drosophila OSS cell small RNA libraries, rep3	S34 KC+48 #1	V082 embryo 14-24hr	S2 female head	V024 kc167 cell	S30 s2-48 #2	S1 male head	SRR001347 ago2 untreated	SRR001338 IR non-beta-eliminated	V019 GM2 cell	SRR001664 homozygous dcr-2_untreated	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S9 0-1h #3 (7)	SRR001349 heterozygous dcr-2_untreated	V018 Kc167 cell	V009 CMEL1	GSM239052 S2 cells, non beta-eliminated	V026 1182-4H cell	S10 2-6h #1 (8)	V021 ML-DmD21 cell	S28 0-2d pupae	V011 Sg4	V002 IR+	V010 MLDmD20c5	V020 S2R+ cell	V001 IR-	S15 S2 -48 #1	V090 CS  male total RNA	GSM280085 WT testes (18-24nt)	S27 0-1d Pupae (w)	SRR001345 ago2 non-beta-eliminated	S23 female body #2	S19 2-4day pupae #1	V025 S2R+ cell	V033 CMEW1 Cl.8+ cell	S8 S2-48,+48, KC-48, +48 mix	GSM239041 fly heads, non beta-eliminated	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR032094 ago2 knockdown	V063 CS,ovary,AGO1IP	S21 disk #2	S7 12-24hr embryo	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR029030 dcr-2 knockdown	SRR001348 ago2 oxidized	S5 imaginal disc	SRR029029 dcr-1 knockdown	V067 S2-NP	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR001343 dcr-2 non-beta-eliminated	GSM280088 S2cell (AGO1IP)	SRR029032 r2d2 knockdown	V098 dcr-2[L811fsX] ovary	SRR029028 untreated (mock)	S3 male body	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR029033 lacZ knockdown	V064 ago2[414], ovary, AGO1IP	S11 2-6h #2 (9)	V083 male, one day	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM180328 adult heads (female heads, male heads)	S14 0-1hr #1 (A)	SRR014275 Ovary_rep1 LK_P	SRR014277 Ovary_rep1 NA_P	SRR001344 dcr-2 beta-eliminated	GSM379059	GSM379057 Krimp Mutant	GSM379052 Aub Heterozygote	V088 r2d2[1] ovary total RNA	V028 CMEW1 Cl.8+ cell	V066 r2d2[1], ovary, AGO1IP	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR032093 ago1 knockdown	SRR029031 loqs-ORF knockdown	S26 1st instar #2	SRR014273 Ovary_rep1_Har_P	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM379064 Vasa Mutant	GSM180332 mid embryo (6-10)	GSM379063 Vasa Heterozygote	GSM379065 Zuc Heterozygote	S17 3rd inster #1	S25 1st instar #1	S4 female body	GSM467729 WT	GSM280083 dcr-2-/- ovaries (18-29nt)	V084 female, one day	GSM379054 Flam Heterozygote	GSM379058	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM424739 S2 parental	GSM379060 SpnE Heterozygote	GSM180333 late embryo (12-24)	GSM280084 loqs-/- ovaries (18-29nt)	GSM379053 Aub Mutant	V097 CS ovary	GSM467730 r2d2	GSM379066 Zuc Mutant	SRR010960 wt, oxidized	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379056 Krimp Heterozygote	GSM379051 Armi Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM379062 Squ Mutant	GSM280082 WT ovaries (18-29nt)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379050 Armi Heterozygote	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S18 3rd inster #2	SRR014282 Ovary_rep1 wK_P	GSM379055 Flam Mutant	V075 ML-DmBG1-C1	V089 ago2[414] ovary total RNA	S20 2-4day pupae#2	SRR031693_4	GSM180331 early embryo (2-6)	GSM180335 imaginal discs	GSM467731 loq	SRR010959 Ago3 IP in heterozygotes	SRR014280 Ovary_rep1 w1118_P	GSM379067 SpnE Mutant	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM180337 tissue culture cells (S2 only)	GSM379061 Squ Heterozygote	GSM424741 S2 pKF63 transiently transfected	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001337 WT_females beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR032096 AGO2 IP dcr2 knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180334 larvae: 1st instar and 3rd instars	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM280087 S2cell (AGO2IP)	SRR023399 RNA bound by P19 protein	GSM239051 S2 cells, beta-eliminated	SRR001340 IR beta-eliminated	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM180330 very early embryo (0-1)	SRR023197 RNA Library from S2 control cells	SRR001342 WT_males beta-eliminated	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR032092 mock oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	SRR023402 total RNA extracted from NLS-P19 cells	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010958 Piwi IP in Ago3 trans-heterozygotes
...........CGTCGACGTTACCTCGTATCTT......................................................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0