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dme-mir-3



dme-mir-3

View dme-mir-3 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-3	118	1197534		891	5313		1191043	287		13	1191043	5313

TAATTGTGAGCCACCTAAGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAATCTCACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCAACTTCAAA
........................((((.(((((((((..((((.((((.((((.........)))).)))).))))..))))))))).)))).........................-28.70
...((((((.........((((..((((.(((((((((..((((.((((.((((.........)))).)))).))))..))))))))).))))..))))......)))))).......-38.96
Sense strand

	Size	Blast	Total	V081 embryo 2-6hr	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	S10 2-6h #1 (8)	V002 IR+	V001 IR-	S14 0-1hr #1 (A)	S11 2-6h #2 (9)	S12 6-10h #1 (10)	S13 6-10h #2 (11)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S9 0-1h #3 (7)	S34 KC+48 #1	GSM180331 early embryo (2-6)	V082 embryo 14-24hr	S33 KC-48 #2	SRR014273 Ovary_rep1_Har_P	S29 male head #1	GSM180330 very early embryo (0-1)	GSM180332 mid embryo (6-10)	GSM379059	V097 CS ovary	S7 12-24hr embryo	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014277 Ovary_rep1 NA_P	GSM379051 Armi Mutant	V098 dcr-2[L811fsX] ovary	S2 female head	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379065 Zuc Heterozygote	SRR029633 total small RNAs from hen1 homozygous flies	GSM379057 Krimp Mutant	SRR031696_2152	V089 ago2[414] ovary total RNA	S8 S2-48,+48, KC-48, +48 mix	V084 female, one day	V066 r2d2[1], ovary, AGO1IP	SRR032095 AGO1 IP dcr2 knockdown	SRR014280 Ovary_rep1 w1118_P	V090 CS  male total RNA	S32 s2+48 #2	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S30 s2-48 #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM379050 Armi Heterozygote	S35 KC+48 #2	S31 s2+48 #1	GSM280084 loqs-/- ovaries (18-29nt)	SRR029031 loqs-ORF knockdown	S22 female head #1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V064 ago2[414], ovary, AGO1IP	V076 ML-DmBG3-C2	GSM180333 late embryo (12-24)	GSM379053 Aub Mutant	SRR001345 ago2 non-beta-eliminated	GSM379067 SpnE Mutant	V063 CS,ovary,AGO1IP	V088 r2d2[1] ovary total RNA	S27 0-1d Pupae (w)	S28 0-2d pupae	SRR031692 Total small RNAs from Oregon R	SRR029029 dcr-1 knockdown	SRR014282 Ovary_rep1 wK_P	SRR001338 IR non-beta-eliminated	GSM280087 S2cell (AGO2IP)	SRR029032 r2d2 knockdown	SRR001349 heterozygous dcr-2_untreated	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014275 Ovary_rep1 LK_P	V075 ML-DmBG1-C1	GSM379060 SpnE Heterozygote	V033 CMEW1 Cl.8+ cell	GSM379061 Squ Heterozygote	SRR029028 untreated (mock)	GSM379064 Vasa Mutant	S15 S2 -48 #1	SRR032092 mock oxidized	S18 3rd inster #2	GSM280088 S2cell (AGO1IP)	V011 Sg4	SRR001664 homozygous dcr-2_untreated	V083 male, one day	S23 female body #2	S25 1st instar #1	V021 ML-DmD21 cell	S24 male body #2	SRR032094 ago2 knockdown	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001347 ago2 untreated	SRR031701 Total small RNAs from r2d2 heterozygous flies	S26 1st instar #2	V067 S2-NP	GSM180328 adult heads (female heads, male heads)	GSM379056 Krimp Heterozygote	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	SRR001344 dcr-2 beta-eliminated	S16 KC -48 #1	GSM280085 WT testes (18-24nt)	V019 GM2 cell	SRR029033 lacZ knockdown	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379055 Flam Mutant	V026 1182-4H cell	GSM379062 Squ Mutant	V024 kc167 cell	V009 CMEL1	V025 S2R+ cell	GSM379063 Vasa Heterozygote	V020 S2R+ cell	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V028 CMEW1 Cl.8+ cell	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR029030 dcr-2 knockdown	GSM379066 Zuc Mutant	V008 S2-DRSC	V018 Kc167 cell	S19 2-4day pupae #1	SRR001343 dcr-2 non-beta-eliminated	GSM467729 WT	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR032093 ago1 knockdown	GSM379058	SRR001341 WT_males non-beta-eliminated	V010 MLDmD20c5	S1 male head	SRR001339 WT_females non-beta-eliminated	GSM280082 WT ovaries (18-29nt)	SRR010955 Aub IP in Ago3 heterozygotes	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR001337 WT_females beta-eliminated	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR032096 AGO2 IP dcr2 knockdown	S20 2-4day pupae#2	GSM424739 S2 parental	GSM180335 imaginal discs	S4 female body	SRR031693_4	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	GSM180337 tissue culture cells (S2 only)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM180334 larvae: 1st instar and 3rd instars	OSS7 Drosophila OSS cell small RNA libraries, rep3	S5 imaginal disc	S21 disk #2	GSM239052 S2 cells, non beta-eliminated	S17 3rd inster #1	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	S3 male body	SRR010959 Ago3 IP in heterozygotes	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001348 ago2 oxidized	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR023399 RNA bound by P19 protein	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized
.....GTGAGCCACCTAAGGTCCCGATCCTG.......................................................................................	26	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AGCCACCTAAGGTCCCGATCCTG.......................................................................................	23	1	3	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCCACCTAAGGTCCCGATCCTG.......................................................................................	22	1	22	0	0	0	0	0	0	13	0	0	6	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCCACCTAAGGTCCCGATCCT........................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CCACCTAAGGTCCCGATCCT........................................................................................	20	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CCACCTAAGGTCCCGATC..........................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CCACCTAAGGTCCCGATCCTG.......................................................................................	21	1	30	7	0	0	0	0	0	4	2	1	5	7	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CACCTAAGGTCCCGATCCTG.......................................................................................	20	1	257	55	0	0	11	0	4	61	1	1	37	44	4	2	6	8	5	6	4	4	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CACCTAAGGTCCCGATCCT........................................................................................	19	1	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACCTAAGGTCCCGATCCT........................................................................................	18	1	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACCTAAGGTCCCGATCCTG.......................................................................................	19	1	432	134	0	0	7	0	0	74	1	2	49	80	5	14	3	40	9	0	1	9	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CCTAAGGTCCCGATCCTG.......................................................................................	18	1	132	36	0	0	0	0	0	30	0	1	20	10	17	7	0	8	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TCCTGGGATGCATCTTGTGCAG......................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................AAGATCCTGGCCACATCGTCGCAA.......	24	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGTCGCAACTT....	26	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGTCGCA........	22	1	43	23	3	5	1	0	0	0	0	0	2	3	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGT............	18	1	16	11	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGTCGCAACTTCA..	28	1	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGTCGCAAC......	24	1	33	9	4	14	0	0	0	0	0	0	1	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGTC...........	19	1	12	8	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGTCGC.........	21	1	86	42	15	14	8	3	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGTCGCAACT.....	25	1	9	1	0	3	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGTCG..........	20	1	40	8	0	6	0	0	8	3	1	2	0	0	0	0	0	5	3	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGTCGCAA.......	23	1	27	9	5	9	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGATCCTGGCCACATCGTCGCAACTTC...	27	1	12	1	0	1	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GATCCTGGCCACATCGTCGCAACTTC...	26	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GATCCTGGCCACATCGTCGCAAC......	23	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................CCTGGCCACATCGTCGCAAC......	20	1	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V081 embryo 2-6hr	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	S10 2-6h #1 (8)	V002 IR+	V001 IR-	S14 0-1hr #1 (A)	S11 2-6h #2 (9)	S12 6-10h #1 (10)	S13 6-10h #2 (11)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S9 0-1h #3 (7)	S34 KC+48 #1	GSM180331 early embryo (2-6)	V082 embryo 14-24hr	S33 KC-48 #2	SRR014273 Ovary_rep1_Har_P	S29 male head #1	GSM180330 very early embryo (0-1)	GSM180332 mid embryo (6-10)	GSM379059	V097 CS ovary	S7 12-24hr embryo	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014277 Ovary_rep1 NA_P	GSM379051 Armi Mutant	V098 dcr-2[L811fsX] ovary	S2 female head	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379065 Zuc Heterozygote	SRR029633 total small RNAs from hen1 homozygous flies	GSM379057 Krimp Mutant	SRR031696_2152	V089 ago2[414] ovary total RNA	S8 S2-48,+48, KC-48, +48 mix	V084 female, one day	V066 r2d2[1], ovary, AGO1IP	SRR032095 AGO1 IP dcr2 knockdown	SRR014280 Ovary_rep1 w1118_P	V090 CS  male total RNA	S32 s2+48 #2	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S30 s2-48 #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM379050 Armi Heterozygote	S35 KC+48 #2	S31 s2+48 #1	GSM280084 loqs-/- ovaries (18-29nt)	SRR029031 loqs-ORF knockdown	S22 female head #1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V064 ago2[414], ovary, AGO1IP	V076 ML-DmBG3-C2	GSM180333 late embryo (12-24)	GSM379053 Aub Mutant	SRR001345 ago2 non-beta-eliminated	GSM379067 SpnE Mutant	V063 CS,ovary,AGO1IP	V088 r2d2[1] ovary total RNA	S27 0-1d Pupae (w)	S28 0-2d pupae	SRR031692 Total small RNAs from Oregon R	SRR029029 dcr-1 knockdown	SRR014282 Ovary_rep1 wK_P	SRR001338 IR non-beta-eliminated	GSM280087 S2cell (AGO2IP)	SRR029032 r2d2 knockdown	SRR001349 heterozygous dcr-2_untreated	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014275 Ovary_rep1 LK_P	V075 ML-DmBG1-C1	GSM379060 SpnE Heterozygote	V033 CMEW1 Cl.8+ cell	GSM379061 Squ Heterozygote	SRR029028 untreated (mock)	GSM379064 Vasa Mutant	S15 S2 -48 #1	SRR032092 mock oxidized	S18 3rd inster #2	GSM280088 S2cell (AGO1IP)	V011 Sg4	SRR001664 homozygous dcr-2_untreated	V083 male, one day	S23 female body #2	S25 1st instar #1	V021 ML-DmD21 cell	S24 male body #2	SRR032094 ago2 knockdown	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001347 ago2 untreated	SRR031701 Total small RNAs from r2d2 heterozygous flies	S26 1st instar #2	V067 S2-NP	GSM180328 adult heads (female heads, male heads)	GSM379056 Krimp Heterozygote	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	SRR001344 dcr-2 beta-eliminated	S16 KC -48 #1	GSM280085 WT testes (18-24nt)	V019 GM2 cell	SRR029033 lacZ knockdown	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379055 Flam Mutant	V026 1182-4H cell	GSM379062 Squ Mutant	V024 kc167 cell	V009 CMEL1	V025 S2R+ cell	GSM379063 Vasa Heterozygote	V020 S2R+ cell	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V028 CMEW1 Cl.8+ cell	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR029030 dcr-2 knockdown	GSM379066 Zuc Mutant	V008 S2-DRSC	V018 Kc167 cell	S19 2-4day pupae #1	SRR001343 dcr-2 non-beta-eliminated	GSM467729 WT	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR032093 ago1 knockdown	GSM379058	SRR001341 WT_males non-beta-eliminated	V010 MLDmD20c5	S1 male head	SRR001339 WT_females non-beta-eliminated	GSM280082 WT ovaries (18-29nt)	SRR010955 Aub IP in Ago3 heterozygotes	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR001337 WT_females beta-eliminated	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR032096 AGO2 IP dcr2 knockdown	S20 2-4day pupae#2	GSM424739 S2 parental	GSM180335 imaginal discs	S4 female body	SRR031693_4	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	GSM180337 tissue culture cells (S2 only)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM180334 larvae: 1st instar and 3rd instars	OSS7 Drosophila OSS cell small RNA libraries, rep3	S5 imaginal disc	S21 disk #2	GSM239052 S2 cells, non beta-eliminated	S17 3rd inster #1	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	S3 male body	SRR010959 Ago3 IP in heterozygotes	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001348 ago2 oxidized	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR023399 RNA bound by P19 protein	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized