Page generated on Fri Oct 15 12:01:26 2010

dme-mir-306



dme-mir-306

View dme-mir-306 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-306	134	666570	2	86	638067	1	28335	5	78	16	638067	28335

GTTTAAATCAGTGAATAGTTTAAAAGTCCACTCGATGGCTCAGGTACTTAGTGACTCTCAATGCTTTTGACATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACATAATCTACAAATAAAGTGATAAT
..........................((((((.(..(((.(((((((..(((((((((((((((....).)))..)))))))))))..))))))).)))..)))))))..........................-43.50
......((((.(...(((.(((....((((((.(..(((.(((((((..(((((((((((((((....).)))..)))))))))))..))))))).)))..)))))))...))).))).......).))))...-46.30
Sense strand

	Size	Blast	Total	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	S33 KC-48 #2	GSM379064 Vasa Mutant	SRR029633 total small RNAs from hen1 homozygous flies	V009 CMEL1	S32 s2+48 #2	GSM379057 Krimp Mutant	SRR031696_2152	GSM379065 Zuc Heterozygote	SRR031703 Total small RNAs from r2d2 homozygous flies	V063 CS,ovary,AGO1IP	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR001345 ago2 non-beta-eliminated	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014275 Ovary_rep1 LK_P	V088 r2d2[1] ovary total RNA	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V076 ML-DmBG3-C2	SRR031692 Total small RNAs from Oregon R	S30 s2-48 #2	V066 r2d2[1], ovary, AGO1IP	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM379056 Krimp Heterozygote	S31 s2+48 #1	V064 ago2[414], ovary, AGO1IP	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014277 Ovary_rep1 NA_P	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V033 CMEW1 Cl.8+ cell	GSM379052 Aub Heterozygote	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001338 IR non-beta-eliminated	V021 ML-DmD21 cell	V098 dcr-2[L811fsX] ovary	GSM379062 Squ Mutant	SRR014273 Ovary_rep1_Har_P	V011 Sg4	V024 kc167 cell	V008 S2-DRSC	S16 KC -48 #1	GSM379060 SpnE Heterozygote	GSM379066 Zuc Mutant	V097 CS ovary	V010 MLDmD20c5	GSM379063 Vasa Heterozygote	GSM379054 Flam Heterozygote	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379051 Armi Mutant	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S10 2-6h #1 (8)	V018 Kc167 cell	GSM379050 Armi Heterozygote	SRR001349 heterozygous dcr-2_untreated	SRR032095 AGO1 IP dcr2 knockdown	SRR001664 homozygous dcr-2_untreated	S15 S2 -48 #1	SRR014282 Ovary_rep1 wK_P	S13 6-10h #2 (11)	SRR001347 ago2 untreated	S35 KC+48 #2	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR014280 Ovary_rep1 w1118_P	GSM379053 Aub Mutant	SRR001344 dcr-2 beta-eliminated	V028 CMEW1 Cl.8+ cell	S29 male head #1	S12 6-10h #1 (10)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM280083 dcr-2-/- ovaries (18-29nt)	S34 KC+48 #1	GSM379058	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V026 1182-4H cell	S14 0-1hr #1 (A)	GSM280084 loqs-/- ovaries (18-29nt)	S28 0-2d pupae	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S9 0-1h #3 (7)	V089 ago2[414] ovary total RNA	SRR023400 total RNA extracted from P19 cells	V025 S2R+ cell	GSM379061 Squ Heterozygote	GSM280088 S2cell (AGO1IP)	V081 embryo 2-6hr	SRR001343 dcr-2 non-beta-eliminated	S21 disk #2	S19 2-4day pupae #1	S8 S2-48,+48, KC-48, +48 mix	V020 S2R+ cell	GSM379067 SpnE Mutant	S11 2-6h #2 (9)	GSM280082 WT ovaries (18-29nt)	V019 GM2 cell	GSM280085 WT testes (18-24nt)	SRR029028 untreated (mock)	SRR023399 RNA bound by P19 protein	V002 IR+	GSM379059	S27 0-1d Pupae (w)	V067 S2-NP	SRR023197 RNA Library from S2 control cells	S5 imaginal disc	S23 female body #2	SRR032094 ago2 knockdown	V001 IR-	SRR029032 r2d2 knockdown	SRR029030 dcr-2 knockdown	S22 female head #1	GSM379055 Flam Mutant	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V075 ML-DmBG1-C1	SRR029031 loqs-ORF knockdown	SRR010955 Aub IP in Ago3 heterozygotes	SRR029029 dcr-1 knockdown	GSM424739 S2 parental	SRR010956 Piwi IP in Ago3 heterozygotes	S24 male body #2	SRR029033 lacZ knockdown	GSM343287 Drosophila Toll 10b mutant embryos	SRR010953 Aub heterozygotes, oxidized	GSM467729 WT	SRR010954 Aub trans-heterozygotes, oxidized	SRR001337 WT_females beta-eliminated	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V082 embryo 14-24hr	S17 3rd inster #1	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR032093 ago1 knockdown	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM180331 early embryo (2-6)	GSM467730 r2d2	S2 female head	SRR001348 ago2 oxidized	S18 3rd inster #2	SRR031693_4	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM467731 loq	S4 female body	SRR001346 ago2 beta-eliminated	S20 2-4day pupae#2	GSM180335 imaginal discs	S7 12-24hr embryo	S1 male head	GSM180332 mid embryo (6-10)	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR010959 Ago3 IP in heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	V090 CS  male total RNA	GSM180330 very early embryo (0-1)	S3 male body	GSM180328 adult heads (female heads, male heads)	SRR010951 Ago3 heterozygotes, oxidized	V084 female, one day	V083 male, one day	GSM180333 late embryo (12-24)	GSM424740 S2 pKF63 stably transfected	GSM280087 S2cell (AGO2IP)	GSM239050 fly heads, beta-eliminated	S26 1st instar #2	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S25 1st instar #1	GSM180334 larvae: 1st instar and 3rd instars	SRR001340 IR beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	SRR032096 AGO2 IP dcr2 knockdown	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	GSM239051 S2 cells, beta-eliminated	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR032092 mock oxidized	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
..............ATAGTTTAAAAGTCCACTCGATGGC...............................................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TAGTTTAAAAGTCCACTCGATGGC...............................................................................................	24	1	4	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GTTTAAAAGTCCACTCGATGGC...............................................................................................	22	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTTAAAAGTCCACTCGATGGC...............................................................................................	21	1	15	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TTAAAAGTCCACTCGATGGC...............................................................................................	20	1	55	0	0	0	0	1	1	0	4	0	7	0	5	0	0	0	1	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	1	1	0	1	0	0	0	0	3	1	1	4	0	2	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TAAAAGTCCACTCGATGGC...............................................................................................	19	1	9	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GGCTCAGGTACTTAGTGAC...............................................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GGCTCAGGTACTTAGTGACTCTCA..........................................................................	24	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CTCAGGTACTTAGTGACTCT............................................................................	20	1	19	3	1	2	9	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CTCAGGTACTTAGTGACTCTCAAT........................................................................	24	1	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CTCAGGTACTTAGTGACTCTCA..........................................................................	22	1	346	57	55	48	39	0	4	1	6	0	1	3	1	7	0	3	1	0	4	2	2	4	8	1	3	0	0	0	0	0	4	2	5	4	1	3	4	1	3	2	0	2	2	1	6	1	1	1	1	1	0	0	0	2	2	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	1	2	11	0	7	0	0	0	0	1	0	0	0	1	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0	2	0	2	0	1	0	0	0	1	1	0	0	0	0	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................GGGGGTCACTCTGTGCCTG.......................................	19	1	134	3	3	1	4	37	0	10	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	2	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	1	3	0	0	0	0	0	0	0	0	0	0	2	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	2	0	0	0	8	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GGGGGTCACTCTGTGCCTGT......................................	20	1	275	10	4	2	11	43	0	22	3	29	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	8	0	6	0	1	0	0	0	0	0	3	0	1	0	0	0	0	1	12	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	9	0	0	0	4	0	0	0	0	0	1	0	0	0	0	7	0	0	1	2	0	0	0	7	2	0	0	0	0	0	0	1	0	5	0	0	0	0	0	0	0	0	0	0	1	3	0	1	2	0	0	0	0	1	1	0	2	0	0	0	0	0	0	0	0	3	4	1	3	0	15	0	0	7	2	1	0	0	0	0	0	1	0	0	1	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GGGGTCACTCTGTGCCTGTGCT...................................	22	1	16	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GGGGTCACTCTGTGCCTGTGC....................................	21	1	46	2	1	1	0	1	0	0	1	1	0	2	0	0	0	1	0	0	0	0	0	0	0	1	1	2	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	4	0	0	0	0	0	0	0	0	0	0	0	2	0	0	4	0	0	0	0	1	0	1	0	1	1	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................GGGGTCACTCTGTGCCTGTG.....................................	20	1	61	0	0	0	0	7	0	3	1	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	6	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	5	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	1	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	2	0	1	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GGGGTCACTCTGTGCCTGT......................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GGGGTCACTCTGTGCCTG.......................................	18	1	3	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GGGTCACTCTGTGCCTGTGC....................................	20	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GGGTCACTCTGTGCCTGTG.....................................	19	1	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GGTCACTCTGTGCCTGTG.....................................	18	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GGTCACTCTGTGCCTGTGC....................................	19	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................GTCACTCTGTGCCTGTGC....................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CACTCTGTGCCTGTGCTGCCA...............................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TGCCAGTGGGACATAATCTA................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TGCCAGTGGGACATAATCTACAAATAAAG.......	29	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TGCCAGTGGGACATAATCTACAAA............	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TGCCAGTGGGACATAATCTACA..............	22	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	S33 KC-48 #2	GSM379064 Vasa Mutant	SRR029633 total small RNAs from hen1 homozygous flies	V009 CMEL1	S32 s2+48 #2	GSM379057 Krimp Mutant	SRR031696_2152	GSM379065 Zuc Heterozygote	SRR031703 Total small RNAs from r2d2 homozygous flies	V063 CS,ovary,AGO1IP	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR001345 ago2 non-beta-eliminated	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014275 Ovary_rep1 LK_P	V088 r2d2[1] ovary total RNA	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V076 ML-DmBG3-C2	SRR031692 Total small RNAs from Oregon R	S30 s2-48 #2	V066 r2d2[1], ovary, AGO1IP	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM379056 Krimp Heterozygote	S31 s2+48 #1	V064 ago2[414], ovary, AGO1IP	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014277 Ovary_rep1 NA_P	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V033 CMEW1 Cl.8+ cell	GSM379052 Aub Heterozygote	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001338 IR non-beta-eliminated	V021 ML-DmD21 cell	V098 dcr-2[L811fsX] ovary	GSM379062 Squ Mutant	SRR014273 Ovary_rep1_Har_P	V011 Sg4	V024 kc167 cell	V008 S2-DRSC	S16 KC -48 #1	GSM379060 SpnE Heterozygote	GSM379066 Zuc Mutant	V097 CS ovary	V010 MLDmD20c5	GSM379063 Vasa Heterozygote	GSM379054 Flam Heterozygote	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379051 Armi Mutant	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S10 2-6h #1 (8)	V018 Kc167 cell	GSM379050 Armi Heterozygote	SRR001349 heterozygous dcr-2_untreated	SRR032095 AGO1 IP dcr2 knockdown	SRR001664 homozygous dcr-2_untreated	S15 S2 -48 #1	SRR014282 Ovary_rep1 wK_P	S13 6-10h #2 (11)	SRR001347 ago2 untreated	S35 KC+48 #2	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR014280 Ovary_rep1 w1118_P	GSM379053 Aub Mutant	SRR001344 dcr-2 beta-eliminated	V028 CMEW1 Cl.8+ cell	S29 male head #1	S12 6-10h #1 (10)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM280083 dcr-2-/- ovaries (18-29nt)	S34 KC+48 #1	GSM379058	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V026 1182-4H cell	S14 0-1hr #1 (A)	GSM280084 loqs-/- ovaries (18-29nt)	S28 0-2d pupae	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S9 0-1h #3 (7)	V089 ago2[414] ovary total RNA	SRR023400 total RNA extracted from P19 cells	V025 S2R+ cell	GSM379061 Squ Heterozygote	GSM280088 S2cell (AGO1IP)	V081 embryo 2-6hr	SRR001343 dcr-2 non-beta-eliminated	S21 disk #2	S19 2-4day pupae #1	S8 S2-48,+48, KC-48, +48 mix	V020 S2R+ cell	GSM379067 SpnE Mutant	S11 2-6h #2 (9)	GSM280082 WT ovaries (18-29nt)	V019 GM2 cell	GSM280085 WT testes (18-24nt)	SRR029028 untreated (mock)	SRR023399 RNA bound by P19 protein	V002 IR+	GSM379059	S27 0-1d Pupae (w)	V067 S2-NP	SRR023197 RNA Library from S2 control cells	S5 imaginal disc	S23 female body #2	SRR032094 ago2 knockdown	V001 IR-	SRR029032 r2d2 knockdown	SRR029030 dcr-2 knockdown	S22 female head #1	GSM379055 Flam Mutant	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V075 ML-DmBG1-C1	SRR029031 loqs-ORF knockdown	SRR010955 Aub IP in Ago3 heterozygotes	SRR029029 dcr-1 knockdown	GSM424739 S2 parental	SRR010956 Piwi IP in Ago3 heterozygotes	S24 male body #2	SRR029033 lacZ knockdown	GSM343287 Drosophila Toll 10b mutant embryos	SRR010953 Aub heterozygotes, oxidized	GSM467729 WT	SRR010954 Aub trans-heterozygotes, oxidized	SRR001337 WT_females beta-eliminated	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V082 embryo 14-24hr	S17 3rd inster #1	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR032093 ago1 knockdown	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM180331 early embryo (2-6)	GSM467730 r2d2	S2 female head	SRR001348 ago2 oxidized	S18 3rd inster #2	SRR031693_4	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM467731 loq	S4 female body	SRR001346 ago2 beta-eliminated	S20 2-4day pupae#2	GSM180335 imaginal discs	S7 12-24hr embryo	S1 male head	GSM180332 mid embryo (6-10)	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR010959 Ago3 IP in heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	V090 CS  male total RNA	GSM180330 very early embryo (0-1)	S3 male body	GSM180328 adult heads (female heads, male heads)	SRR010951 Ago3 heterozygotes, oxidized	V084 female, one day	V083 male, one day	GSM180333 late embryo (12-24)	GSM424740 S2 pKF63 stably transfected	GSM280087 S2cell (AGO2IP)	GSM239050 fly heads, beta-eliminated	S26 1st instar #2	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S25 1st instar #1	GSM180334 larvae: 1st instar and 3rd instars	SRR001340 IR beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	SRR032096 AGO2 IP dcr2 knockdown	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	GSM239051 S2 cells, beta-eliminated	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR032092 mock oxidized	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
.....................................GCTCAGGTACTTAGTGACTCTC...........................................................................	22	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GCTCAGGTACTTAGTGACTCT............................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0