Page generated on Fri Oct 15 12:01:24 2010

dme-mir-308




dme-mir-308

View dme-mir-308 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-30811284084711021950716264558912317645589195071


GGGGTTAATAACACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCAGCAGCGAAAA
........................(((((((((((.(((((((.((((..(.(.....).)..)))).))))))).))))))))))).........................-24.70
..(((((......(((....))).(((((((((((.(((((((.((((..(.(.....).)..)))).))))))).))))))))))).))))).((.((....)))).....-34.40
Sense strand
                                                                                                                SizeBlastTotalOSS8 Drosophila OSS cell small RNA libraries, rep4 OSS6 Drosophila OSS cell small RNA libraries, rep2 OSS2 Drosophila OSS cell small RNA libraries, rep1 OSS7 Drosophila OSS cell small RNA libraries, rep3 SRR031696_2152 S32 s2+48 #2V076 ML-DmBG3-C2SRR031703 Total small RNAs from r2d2 homozygous flies S33 KC-48 #2SRR031701 Total small RNAs from r2d2 heterozygous flies SRR029633 total small RNAs from hen1 homozygous flies S30 s2-48 #2GSM280087 S2cell (AGO2IP) SRR031697 Total small RNAs from dcr-2 heterozygous flies S31 s2+48 #1V088 r2d2[1] ovary total RNA  V097 CS ovaryV075 ML-DmBG1-C1SRR031693_4 SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 V025 S2R+ cellSRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM379065 Zuc Heterozygote V020 S2R+ cellSRR014282 Ovary_rep1 wK_P SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies V098 dcr-2[L811fsX] ovaryV008 S2-DRSCS29 male head #1SRR031692 Total small RNAs from Oregon R SRR031699 Total small RNAs from dcr-2 homozygous flies GSM379064 Vasa Mutant V033 CMEW1 Cl.8+ cellSRR014280 Ovary_rep1 w1118_P V028 CMEW1 Cl.8+ cellSRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb V067 S2-NPS10 2-6h #1 (8)GSM379057 Krimp Mutant SRR014275 Ovary_rep1 LK_P GSM379063 Vasa Heterozygote GSM379056 Krimp Heterozygote SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 SRR014277 Ovary_rep1 NA_P V018 Kc167 cellV009 CMEL1V021 ML-DmD21 cellSRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V024 kc167 cellSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 V081 embryo 2-6hrV010 MLDmD20c5V065 dcr-2[L811fsX], ovary, AGO1IPS35 KC+48 #2SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S9 0-1h #3 (7)V063 CS,ovary,AGO1IPS28 0-2d pupaeGSM379066 Zuc Mutant V066 r2d2[1], ovary, AGO1IPV089 ago2[414] ovary total RNA  S16 KC -48 #1V026 1182-4H cellS15 S2 -48 #1S13 6-10h #2 (11)S14 0-1hr #1 (A)GSM379062 Squ Mutant SRR029030 dcr-2 knockdown V090 CS  male total RNA  GSM379061 Squ Heterozygote S34 KC+48 #1V082 embryo 14-24hrSRR014273 Ovary_rep1_Har_P SRR001338 IR non-beta-eliminated SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb S22 female head #1GSM379060 SpnE Heterozygote SRR032093 ago1 knockdown SRR029032 r2d2 knockdown S12 6-10h #1 (10)GSM379052 Aub Heterozygote GSM379051 Armi Mutant GSM379058 SRR029028 untreated (mock) V011 Sg4GSM379067 SpnE Mutant SRR029031 loqs-ORF knockdown SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies V001 IR-SRR032096 AGO2 IP dcr2 knockdownS23 female body #2S8 S2-48,+48, KC-48, +48 mixS24 male body #2GSM379055 Flam Mutant SRR032094 ago2 knockdown GSM280088 S2cell (AGO1IP) V064 ago2[414], ovary, AGO1IPGSM379054 Flam Heterozygote GSM379050 Armi Heterozygote S19 2-4day pupae #1GSM379059 V019 GM2 cellSRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies SRR029029 dcr-1 knockdown SRR029033 lacZ knockdown S11 2-6h #2 (9)SRR010959 Ago3 IP in heterozygotes GSM280083 dcr-2-/- ovaries (18-29nt) S21 disk #2V084 female, one dayS2 female headV002 IR+GSM379053 Aub Mutant S27 0-1d Pupae (w)SRR001349 heterozygous dcr-2_untreated SRR001664 homozygous dcr-2_untreated SRR001347 ago2 untreated S1 male headGSM280082 WT ovaries (18-29nt) V083 male, one dayGSM467729 WT SRR032095 AGO1 IP dcr2 knockdown GSM280084 loqs-/- ovaries (18-29nt) SRR032092 mock oxidized S4 female bodyS17 3rd inster #1GSM180337 tissue culture cells (S2 only) S5 imaginal discGSM180328 adult heads (female heads, male heads) S26 1st instar #2GSM343287 Drosophila Toll 10b mutant embryos S3 male bodyGSM180331 early embryo (2-6) GSM180330 very early embryo (0-1) SRR010954 Aub trans-heterozygotes, oxidized SRR010953 Aub heterozygotes, oxidized GSM467730 r2d2 S25 1st instar #1S18 3rd inster #2S20 2-4day pupae#2GSM180332 mid embryo (6-10) S7 12-24hr embryoSRR010960 wt, oxidized GSM180335 imaginal discs GSM467731 loq GSM180329 adult bodies (female bodies, male bodies) SRR001343 dcr-2 non-beta-eliminated SRR001345 ago2 non-beta-eliminated SRR001348 ago2 oxidized GSM280085 WT testes (18-24nt) SRR010955 Aub IP in Ago3 heterozygotes GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM180333 late embryo (12-24) SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR010956 Piwi IP in Ago3 heterozygotes GSM180334 larvae: 1st instar and 3rd instars SRR001340 IR beta-eliminated SRR010951 Ago3 heterozygotes, oxidized GSM424739 S2 parental GSM239050 fly heads, beta-eliminated SRR010952 Ago3 trans-heterozygotes, oxidized GSM239051 S2 cells, beta-eliminated GSM280086 WT ovaries (AGO2IP) GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 GSM239041 fly heads, non beta-eliminated SRR001344 dcr-2 beta-eliminated GSM239052 S2 cells, non beta-eliminated SRR010957 Aub IP in Ago3 trans-heterozygotes SRR001337 WT_females beta-eliminated SRR023407 RNA bound by NLS-P19 protein SRR023402 total RNA extracted from NLS-P19 cells SRR001346 ago2 beta-eliminated GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR023197 RNA Library from S2 control cells GSM424740 S2 pKF63 stably transfected SRR023400 total RNA extracted from P19 cells GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries SRR001342 WT_males beta-eliminated GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM246084 D. melanogaster adult male heads 454 GSM424741 S2 pKF63 transiently transfected SRR023399 RNA bound by P19 protein
....TTAATAACACGTCTCGACGCCT......................................................................................2215000000000000000000011000000000000101000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TAATAACACGTCTCGACG.........................................................................................1811000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TAATAACACGTCTCGACGCCT......................................................................................21139000000100000000800001000410000000000001101001011002001000000010100100101000200000001000110000000000000000000000000110200000001000000000000000000000000000000000000000000000000000000000000000
......AATAACACGTCTCGACGCCT......................................................................................20121000001100100000100030000100200000301000100000010100000000000000000000000000100000010000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ATAACACGTCTCGACGCCT......................................................................................19113000000100003000000000001000000000100000100000010110000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
........TAACACGTCTCGACGCCT......................................................................................18123000008100001003100000000100000000200000000000000000000000000000010120000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.......................CCTCGCAGTATATTTTTGTGT....................................................................2111000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCGCAGTATATTTTTGTGTTTTGT...............................................................2413000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCGCAGTATATTTTTGTGTTT..................................................................21113000000000010000000000000021000000002100000001001000000100000000000010000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCGCAGTATATTTTTGTGTTTT.................................................................22150211000200000020200350111012000011300000010010000000001110000021001000000010000010000000000000010000002000000000100003100000000000000000000000000000010001000000000000000000000000000000000000
.........................TCGCAGTATATTTTTGTGTTTTG................................................................23144000000000000010410020012000110011000110302102000000300000001012000001200001000010000100110000000001100010000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.........................TCGCAGTATATTTTTGTGTT...................................................................2014000000000000000010000000000000000000000000000000000001010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CGCAGTATATTTTTGTGTTTTGTTTCGTTT........................................................3018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000020000000000000000000000000000000000000000000000000
..........................CGCAGTATATTTTTGTGTTTTGTTTCGTTTT.......................................................3111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..........................CGCAGTATATTTTTGTGTTTTGTTTC............................................................261160000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000020000000200000000000000000000000000000000000000000
..........................CGCAGTATATTTTTGTGTTTTGTT..............................................................241670000002000100000014011001010300200409030001010003000000000000000100000061000000000000100000000000000000010000000000000000000611000000000000010000000100000000000000000000000000000000000000000
..........................CGCAGTATATTTTTGTGT....................................................................18130414131811022810212002123161573002005100004022200321013203225200100111021031011070043010160011240190136000000030100220001020200000001210000000000004100000010100030000000000001000010000000000000000000
..........................CGCAGTATATTTTTGTGTTTT.................................................................21182255741332525162861823616411083441731365262212836817523121934311219711565421314031618431996918130618298160372850236443875641031209092751251711035526324122818117467317235511024153923003329292930272611172831119342245711161954004214293611006791520952010031000021120101002013010110010000001000000000000000000000
..........................CGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAA...................................................3511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..........................CGCAGTATATTTTTGTGTTTTGTTT.............................................................25112000000000000000001000000000010000201000000000000000000000000000000000000000000000000000000000000000000001000000000000000000401000000000000010000000000000000000000000000000000000000000000000
..........................CGCAGTATATTTTTGTGTTTTGTTTCGT..........................................................2813000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000
..........................CGCAGTATATTTTTGTGTTT..................................................................2011860161017808107126219177136148200371241241911213835869107013472333153708892116962237165321311167580200335106613701317528201351600631594142236054148001129300001330120101033303650000001600000120000000600000000000000000001000000000000000000000
..........................CGCAGTATATTTTTGTGTTTTG................................................................2211807852052191891691746981124621351712108845066918988473523550144595485941624866460944024116431539963973405737922716151033569319534423221312531872802997258928002676269323992235260222952517216924001892199818851827271168818812011499193148212911612528148733410421511858331068105817498687610831612480978655142742804817419756734715568524662225101209528632332774144262004293633384150350200493239226427686145231511177230192175178189555717611271232865454172713524154248241321032441561615125117050202001000000000000
..........................CGCAGTATATTTTTGTGTTTTGTTTCG...........................................................2715000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000010000000000000000000000000000000000000000000000000
..........................CGCAGTATATTTTTGTGTT...................................................................1915381188110141032793242347394310452152721802051138570356220094130844620200301001800020620310101133000222030519101001002003000002010310100011212003000000002210000000000000000000000000000000000000000000000000
..........................CGCAGTATATTTTTGTGTTTTGT...............................................................23179833123738401326316018311051112165231281714195663712912432411734912331135756940110021031711130011071033001170001014221152010104400234000001031200500001423000000000000021000000100001000110000000000000000000000000000000
..........................CGCAGTATATTTTTGTGTTTTGTTTCGTTTTGC.....................................................3311000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...........................GCAGTATATTTTTGTGTTT..................................................................19118010100300020000100000000002000000200000000000100010000000000000000000000000000000000000000200000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
...........................GCAGTATATTTTTGTGTTTTG................................................................211178732223084301770661102754315838347752412657444328010046202221392702730583330322320131625212018161501235014125139011102697270816220205001513194817117340007021126075300002030440600023001000010000000000000000000000000000000000000000000000000000000000
...........................GCAGTATATTTTTGTGTT...................................................................1814000000000000000000000000000000001000000000000000001000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCAGTATATTTTTGTGTTTTGTT..............................................................2311000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCAGTATATTTTTGTGTTTT.................................................................201810011005003120220300030372015040011202000001101000000201004000002000000000001000010002010011000000000000010000000000000000000000000000010000000000000000000000000000000000000000000000000000000
...........................GCAGTATATTTTTGTGTTTTGT...............................................................2215000000010000000300010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAGTATATTTTTGTGTTTTG................................................................2011550000001200200230202155030213212001012013100010111101121400010530200010002400000000040021040110010000010000005040000100000000000001400000000000000000000000000000000000000000000000000000000000000
............................CAGTATATTTTTGTGTTTTGTT..............................................................2211000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAGTATATTTTTGTGTTTT.................................................................1918000000000020000000100000031000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAGTATATTTTTGTGTTTTGT...............................................................2111000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAGTATATTTTTGTGTTT..................................................................1811000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGTATATTTTTGTGTTTTG................................................................19178000000200010700110643002007200101121110011103210010020000703000100000100001001002000001001001000000000000200001000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGTATATTTTTGTGTTTT.................................................................1814000000000010000200000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GTATATTTTTGTGTTTTG................................................................18120600000060001055046151812000115300200700105006213131021281930000403031100000200100102000000100005403000200030010000003050000000001010000000000000000000000000010000000000000000000000000000000000000
...............................TATATTTTTGTGTTTTGTTT.............................................................2011000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TATATTTTTGTGTTTTGTTTCGT..........................................................2311000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TATTTTTGTGTTTTGTTTCGT..........................................................2111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.........................................TGTTTTGTTTCGTTTTGCAATC.................................................2211000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TGTTTCGTTTTGCAATCC................................................1811000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GTTTCGTTTTGCAATCCAA..............................................1913000000020000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TTTCGTTTTGCAATCCAA..............................................18110000000000000000000020000000000000000001000000100000010000000000000000000000000000000100000000000000001000000000000000000030000000000000000000000000000000000000000000000000000000000000000000
................................................TTTCGTTTTGCAATCCAAA.............................................191480000000000000000000000300000000020003022010121000000600040400010000000000000012000000000000000100000000000000100000100000010000000000000000000000000000000000000000000000000000000000000000000
...............................................................CAAATCACAGGATTATACTGTGAG.........................2417000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AAATCACAGGATTATACTGTG...........................21110000000050120010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AAATCACAGGATTATACTGTGAGA........................24123422602000100010000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AAATCACAGGATTATACTGTGA..........................2214197144612717715161716801613000300200100001312530030040021313120002002500610301111011001211310100000016113000021000001000070000002010101000000000001001000000000000000000010000000000000200000000000000000000
................................................................AAATCACAGGATTATACTGTGAG.........................231153136939232123121371240311708150100200222000012100000110201001000000010030071901010311000020102200030000000000100000000100000000001000000000000010001000100000000001000000000000000000000000000000000000000000
................................................................AAATCACAGGATTATACTGT............................2016000000000000000000000000000000000000100100002000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AAATCACAGGATTATACT..............................1811000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................AATCACAGGATTATACTGTGAGATG......................2512020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................AATCACAGGATTATACTG.............................18144555325231141514187022132021101200106029611060040504200433054541163008121170322531020211441240330100209200100003101011800010800001000013202000000010100221700000020000010000000000000100000100010000000000000
.................................................................AATCACAGGATTATACTGTGAGA........................23121133463703272371057401071939111390668000040020002001040370000001201001000000000006005210100018600007002910121130005000500131082000000270190000000363100000010100001100000002000002110200000300000000000000000000000000000
.................................................................AATCACAGGATTATACTGTG...........................20123546510173626211730172241171259024911142110000122721334217567043205513124540432141113002720211221211401204231033129021123012402030910513102822182000001003882000000000110661000000000000011020000110001000000000100000000000000000
.................................................................AATCACAGGATTATACTGTGAG.........................22141911911013710327492945691708531067924236587114376412801753187121731127213337951232418627614069203283362706363521371758545143474272313369961211367411224371945111532968762191680756452354922435623927131814111798711211024832920472322326251417132416810425025922179010651016810310914400007958855054692235916210037182540260190151001171013007750000100101010100000000000000
.................................................................AATCACAGGATTATACTGTGAGAT.......................2418321101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................AATCACAGGATTATACTGT............................19131332241298652179512240545266311765234377115164101376294322521441516288531439131972929286283773406169522492118155756325153138441185224112721374511854691211313305325108486610161231090741902013752567391601520000004110047460300002600000100000090001000300000000000000000000000
.................................................................AATCACAGGATTATACTGTGA..........................211205341287472854326161194633281539685491049239266878580227054494518476992401960653853119893598104268207834103539220148475526885406151405811396633743558112833536639123526820878824274331634961306835847553829938210325653038526154911658682129835061091207454188485247178530184214210582421701458457135467954220251120303214331623252761542692741793024013104144472562255481519280112226116016010232483598121255817000200425000000000000000000
..................................................................ATCACAGGATTATACTGTGA..........................20132715161061743023016390111300000000000100340700000020000000000000100600005000207350000200001100000000001200110000000000060410200001000200000000102202000000000001010000010000000000000100000000000000000000
..................................................................ATCACAGGATTATACTGT............................1815000000000000011000000000000000000000000010000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATCACAGGATTATACTGTG...........................19121020005003001005000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000
..................................................................ATCACAGGATTATACTGTGAGAT.......................2318003400000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATCACAGGATTATACTGTGAG.........................211160623422020814862840086001550370000010000000011001000001180000000000000000180024020100110101612100040000010250000000000184001010000001200101003000100000000210000020000003001100000000000000000000100000000000000000000
..................................................................ATCACAGGATTATACTGTGAGA........................2213291548612598448298144212134393265043331000801403031183256120030103001430000124010008021012020228100021000210001060163000020000100000360041001000142000002011200000000000000010102100200220000000000000000000000000000000
...................................................................TCACAGGATTATACTGTG...........................1813000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TCACAGGATTATACTGTGAG.........................20125347117076001620580020000000000000002000000006000000000000000030090800020103000010000200020000000000161000000100000000300001000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TCACAGGATTATACTGTGAGAT.......................2211010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TCACAGGATTATACTGTGA..........................1917620441180070015031000000000000001040000002000000000000000020000100000411000000000000000000000000121001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TCACAGGATTATACTGTGAGA........................2111230116123800120110036000000000000010010020000000000000100100020000400000000000000000000700000000200030020010000000000000000000000000000000000000000000000001100000110000000000000010100000000000000
....................................................................CACAGGATTATACTGTGAG.........................191218542101578041002180230000000000000025010000050001001000000000000148000102101000100000000000000010200400000000000000060000000000300000000001120000002000000000000000000000000000000000000000000000000
....................................................................CACAGGATTATACTGTGA..........................18141444364020111010010000000000013000000000000000100000100000000100000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
....................................................................CACAGGATTATACTGTGAGA........................2017000014000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................ACAGGATTATACTGTGAGA........................191290021100020020000000000001000000210000000000120000010000000000010000000000000000000000000000000000000001000000000000000000010000000000100000000000000000000000000000000000000000000000000000000
.....................................................................ACAGGATTATACTGTGAG.........................1815064549146815061242311101004000130000300000011001231005000440044000301001000010250000000900000103030402010030030000020032010000008000000000005100000010001000000004000100000000000000000000000000000000000000000000
......................................................................CAGGATTATACTGTGAGA........................1814000000000000000000000000000000000000000000002000000000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATGACCAGCGTGCCAGCA.......1811000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                SizeBlastTotalOSS8 Drosophila OSS cell small RNA libraries, rep4 OSS6 Drosophila OSS cell small RNA libraries, rep2 OSS2 Drosophila OSS cell small RNA libraries, rep1 OSS7 Drosophila OSS cell small RNA libraries, rep3 SRR031696_2152 S32 s2+48 #2V076 ML-DmBG3-C2SRR031703 Total small RNAs from r2d2 homozygous flies S33 KC-48 #2SRR031701 Total small RNAs from r2d2 heterozygous flies SRR029633 total small RNAs from hen1 homozygous flies S30 s2-48 #2GSM280087 S2cell (AGO2IP) SRR031697 Total small RNAs from dcr-2 heterozygous flies S31 s2+48 #1V088 r2d2[1] ovary total RNA  V097 CS ovaryV075 ML-DmBG1-C1SRR031693_4 SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 V025 S2R+ cellSRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM379065 Zuc Heterozygote V020 S2R+ cellSRR014282 Ovary_rep1 wK_P SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies V098 dcr-2[L811fsX] ovaryV008 S2-DRSCS29 male head #1SRR031692 Total small RNAs from Oregon R SRR031699 Total small RNAs from dcr-2 homozygous flies GSM379064 Vasa Mutant V033 CMEW1 Cl.8+ cellSRR014280 Ovary_rep1 w1118_P V028 CMEW1 Cl.8+ cellSRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb V067 S2-NPS10 2-6h #1 (8)GSM379057 Krimp Mutant SRR014275 Ovary_rep1 LK_P GSM379063 Vasa Heterozygote GSM379056 Krimp Heterozygote SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 SRR014277 Ovary_rep1 NA_P V018 Kc167 cellV009 CMEL1V021 ML-DmD21 cellSRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V024 kc167 cellSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 V081 embryo 2-6hrV010 MLDmD20c5V065 dcr-2[L811fsX], ovary, AGO1IPS35 KC+48 #2SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S9 0-1h #3 (7)V063 CS,ovary,AGO1IPS28 0-2d pupaeGSM379066 Zuc Mutant V066 r2d2[1], ovary, AGO1IPV089 ago2[414] ovary total RNA  S16 KC -48 #1V026 1182-4H cellS15 S2 -48 #1S13 6-10h #2 (11)S14 0-1hr #1 (A)GSM379062 Squ Mutant SRR029030 dcr-2 knockdown V090 CS  male total RNA  GSM379061 Squ Heterozygote S34 KC+48 #1V082 embryo 14-24hrSRR014273 Ovary_rep1_Har_P SRR001338 IR non-beta-eliminated SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb S22 female head #1GSM379060 SpnE Heterozygote SRR032093 ago1 knockdown SRR029032 r2d2 knockdown S12 6-10h #1 (10)GSM379052 Aub Heterozygote GSM379051 Armi Mutant GSM379058 SRR029028 untreated (mock) V011 Sg4GSM379067 SpnE Mutant SRR029031 loqs-ORF knockdown SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies V001 IR-SRR032096 AGO2 IP dcr2 knockdownS23 female body #2S8 S2-48,+48, KC-48, +48 mixS24 male body #2GSM379055 Flam Mutant SRR032094 ago2 knockdown GSM280088 S2cell (AGO1IP) V064 ago2[414], ovary, AGO1IPGSM379054 Flam Heterozygote GSM379050 Armi Heterozygote S19 2-4day pupae #1GSM379059 V019 GM2 cellSRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies SRR029029 dcr-1 knockdown SRR029033 lacZ knockdown S11 2-6h #2 (9)SRR010959 Ago3 IP in heterozygotes GSM280083 dcr-2-/- ovaries (18-29nt) S21 disk #2V084 female, one dayS2 female headV002 IR+GSM379053 Aub Mutant S27 0-1d Pupae (w)SRR001349 heterozygous dcr-2_untreated SRR001664 homozygous dcr-2_untreated SRR001347 ago2 untreated S1 male headGSM280082 WT ovaries (18-29nt) V083 male, one dayGSM467729 WT SRR032095 AGO1 IP dcr2 knockdown GSM280084 loqs-/- ovaries (18-29nt) SRR032092 mock oxidized S4 female bodyS17 3rd inster #1GSM180337 tissue culture cells (S2 only) S5 imaginal discGSM180328 adult heads (female heads, male heads) S26 1st instar #2GSM343287 Drosophila Toll 10b mutant embryos S3 male bodyGSM180331 early embryo (2-6) GSM180330 very early embryo (0-1) SRR010954 Aub trans-heterozygotes, oxidized SRR010953 Aub heterozygotes, oxidized GSM467730 r2d2 S25 1st instar #1S18 3rd inster #2S20 2-4day pupae#2GSM180332 mid embryo (6-10) S7 12-24hr embryoSRR010960 wt, oxidized GSM180335 imaginal discs GSM467731 loq GSM180329 adult bodies (female bodies, male bodies) SRR001343 dcr-2 non-beta-eliminated SRR001345 ago2 non-beta-eliminated SRR001348 ago2 oxidized GSM280085 WT testes (18-24nt) SRR010955 Aub IP in Ago3 heterozygotes GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM180333 late embryo (12-24) SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR010956 Piwi IP in Ago3 heterozygotes GSM180334 larvae: 1st instar and 3rd instars SRR001340 IR beta-eliminated SRR010951 Ago3 heterozygotes, oxidized GSM424739 S2 parental GSM239050 fly heads, beta-eliminated SRR010952 Ago3 trans-heterozygotes, oxidized GSM239051 S2 cells, beta-eliminated GSM280086 WT ovaries (AGO2IP) GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 GSM239041 fly heads, non beta-eliminated SRR001344 dcr-2 beta-eliminated GSM239052 S2 cells, non beta-eliminated SRR010957 Aub IP in Ago3 trans-heterozygotes SRR001337 WT_females beta-eliminated SRR023407 RNA bound by NLS-P19 protein SRR023402 total RNA extracted from NLS-P19 cells SRR001346 ago2 beta-eliminated GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR023197 RNA Library from S2 control cells GSM424740 S2 pKF63 stably transfected SRR023400 total RNA extracted from P19 cells GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries SRR001342 WT_males beta-eliminated GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM246084 D. melanogaster adult male heads 454 GSM424741 S2 pKF63 transiently transfected SRR023399 RNA bound by P19 protein
...........CACGTCTCGACGCCTCGCAGTATAT............................................................................2511000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000