Page generated on Fri Oct 15 12:01:27 2010

dme-mir-309



dme-mir-309

View dme-mir-309 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-309	118	468765	1	7	5286	1	463459	3	10	15	463459	5286

GAAGTCTTAAAGTTTGGAATAGCAATTATACGACAAACCTTGTTCGGTTTTGCCAATTTCCAAGCCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGACGACCAGCTAATTGT
........................((((((.(((((((.(((..((((.(((.(.........).))).))))..))).))))))).)))))).........................-20.10
...(((......(((((.......((((((.(((((((.(((..((((.(((.(.........).))).))))..))).))))))).)))))).))))).....)))...........-24.40
Sense strand

	Size	Blast	Total	V081 embryo 2-6hr	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S10 2-6h #1 (8)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	S14 0-1hr #1 (A)	S11 2-6h #2 (9)	V001 IR-	V002 IR+	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S12 6-10h #1 (10)	S13 6-10h #2 (11)	S9 0-1h #3 (7)	S34 KC+48 #1	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S33 KC-48 #2	V082 embryo 14-24hr	GSM180331 early embryo (2-6)	S29 male head #1	GSM180330 very early embryo (0-1)	SRR014273 Ovary_rep1_Har_P	GSM180332 mid embryo (6-10)	S2 female head	V084 female, one day	S7 12-24hr embryo	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR029633 total small RNAs from hen1 homozygous flies	SRR032092 mock oxidized	S22 female head #1	V098 dcr-2[L811fsX] ovary	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V097 CS ovary	S30 s2-48 #2	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	V066 r2d2[1], ovary, AGO1IP	S8 S2-48,+48, KC-48, +48 mix	V063 CS,ovary,AGO1IP	SRR014277 Ovary_rep1 NA_P	GSM379059	S35 KC+48 #2	S32 s2+48 #2	SRR031696_2152	S28 0-2d pupae	S27 0-1d Pupae (w)	GSM180333 late embryo (12-24)	V083 male, one day	SRR031692 Total small RNAs from Oregon R	S23 female body #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S31 s2+48 #1	SRR014280 Ovary_rep1 w1118_P	GSM379057 Krimp Mutant	GSM280087 S2cell (AGO2IP)	S19 2-4day pupae #1	V089 ago2[414] ovary total RNA	V064 ago2[414], ovary, AGO1IP	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S26 1st instar #2	SRR031699 Total small RNAs from dcr-2 homozygous flies	GSM379065 Zuc Heterozygote	S18 3rd inster #2	GSM467729 WT	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S25 1st instar #1	SRR001338 IR non-beta-eliminated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379067 SpnE Mutant	SRR029032 r2d2 knockdown	S15 S2 -48 #1	GSM379061 Squ Heterozygote	V090 CS  male total RNA	SRR014282 Ovary_rep1 wK_P	SRR032094 ago2 knockdown	S16 KC -48 #1	GSM180328 adult heads (female heads, male heads)	SRR001345 ago2 non-beta-eliminated	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379051 Armi Mutant	V075 ML-DmBG1-C1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	S20 2-4day pupae#2	SRR001664 homozygous dcr-2_untreated	V033 CMEW1 Cl.8+ cell	S17 3rd inster #1	GSM379066 Zuc Mutant	V009 CMEL1	V019 GM2 cell	V088 r2d2[1] ovary total RNA	GSM379050 Armi Heterozygote	SRR001349 heterozygous dcr-2_untreated	SRR014275 Ovary_rep1 LK_P	SRR001343 dcr-2 non-beta-eliminated	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V028 CMEW1 Cl.8+ cell	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR029028 untreated (mock)	V024 kc167 cell	V018 Kc167 cell	OSS8 Drosophila OSS cell small RNA libraries, rep4	S4 female body	V076 ML-DmBG3-C2	GSM379063 Vasa Heterozygote	GSM280084 loqs-/- ovaries (18-29nt)	OSS2 Drosophila OSS cell small RNA libraries, rep1	S1 male head	GSM379064 Vasa Mutant	GSM379053 Aub Mutant	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	SRR001344 dcr-2 beta-eliminated	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM467730 r2d2	GSM180329 adult bodies (female bodies, male bodies)	GSM379058	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	V008 S2-DRSC	S24 male body #2	GSM239051 S2 cells, beta-eliminated	SRR001341 WT_males non-beta-eliminated	GSM180335 imaginal discs	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR031693_4	GSM379056 Krimp Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR029033 lacZ knockdown	V010 MLDmD20c5	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	SRR031703 Total small RNAs from r2d2 homozygous flies	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	GSM280088 S2cell (AGO1IP)	S3 male body	SRR010959 Ago3 IP in heterozygotes	V026 1182-4H cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	S5 imaginal disc	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	S21 disk #2	GSM379062 Squ Mutant	V011 Sg4	V025 S2R+ cell	SRR010958 Piwi IP in Ago3 trans-heterozygotes	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM379060 SpnE Heterozygote	SRR029030 dcr-2 knockdown	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR032093 ago1 knockdown	GSM280085 WT testes (18-24nt)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized
.AAGTCTTAAAGTTTGGAATAGC...............................................................................................	22	1	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AGTCTTAAAGTTTGGAATAGCAAT............................................................................................	24	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AAAGTTTGGAATAGCAATTA..........................................................................................	20	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AAGTTTGGAATAGCAATTA..........................................................................................	19	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AGTTTGGAATAGCAATTAT.........................................................................................	19	1	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ACGACAAACCTTGTTCGGTTTTG..................................................................	23	1	11	0	1	1	3	0	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ACGACAAACCTTGTTCGGTTTT...................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CGACAAACCTTGTTCGGTTTTGC.................................................................	23	1	4	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CGACAAACCTTGTTCGGT......................................................................	18	1	4	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CGACAAACCTTGTTCGGTTTTG..................................................................	22	1	4788	82	1130	693	745	155	16	615	218	37	28	502	60	62	60	122	55	58	6	34	37	21	0	2	2	0	9	0	7	0	0	0	1	0	4	0	0	2	1	0	0	5	0	0	0	1	0	0	3	0	1	1	0	0	0	0	0	0	1	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CGACAAACCTTGTTCGGTTT....................................................................	20	1	48	0	0	1	0	0	42	1	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................CACTGGGTAAAGTTTGTCC...............................	19	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................CACTGGGTAAAGTTTGTCCTAT............................	22	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................CACTGGGTAAAGTTTGTCCT..............................	20	1	17	9	1	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ACTGGGTAAAGTTTGTCCT..............................	19	1	89	61	14	11	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ACTGGGTAAAGTTTGTCC...............................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ACTGGGTAAAGTTTGTCCTA.............................	20	1	358	227	23	36	5	28	10	4	8	8	5	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ACTGGGTAAAGTTTGTCCTAT............................	21	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................CTGGGTAAAGTTTGTCCTA.............................	19	1	92	41	12	14	9	0	0	3	9	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................CTGGGTAAAGTTTGTCCT..............................	18	1	11	9	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGTAAAGTTTGTCCTATAAT.........................	22	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGTAAAGTTTGTCCTA.............................	18	1	35	19	0	2	3	0	0	1	0	2	0	0	6	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TAAAGTTTGTCCTATAATCCCG.....................	22	1	6	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TAATCCCGAAACGACGACCAGCTAA....	25	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TAATCCCGAAACGACGACCAGCT......	23	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TAATCCCGAAACGACGACCAG........	21	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V081 embryo 2-6hr	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S10 2-6h #1 (8)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	S14 0-1hr #1 (A)	S11 2-6h #2 (9)	V001 IR-	V002 IR+	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S12 6-10h #1 (10)	S13 6-10h #2 (11)	S9 0-1h #3 (7)	S34 KC+48 #1	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S33 KC-48 #2	V082 embryo 14-24hr	GSM180331 early embryo (2-6)	S29 male head #1	GSM180330 very early embryo (0-1)	SRR014273 Ovary_rep1_Har_P	GSM180332 mid embryo (6-10)	S2 female head	V084 female, one day	S7 12-24hr embryo	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR029633 total small RNAs from hen1 homozygous flies	SRR032092 mock oxidized	S22 female head #1	V098 dcr-2[L811fsX] ovary	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V097 CS ovary	S30 s2-48 #2	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	V066 r2d2[1], ovary, AGO1IP	S8 S2-48,+48, KC-48, +48 mix	V063 CS,ovary,AGO1IP	SRR014277 Ovary_rep1 NA_P	GSM379059	S35 KC+48 #2	S32 s2+48 #2	SRR031696_2152	S28 0-2d pupae	S27 0-1d Pupae (w)	GSM180333 late embryo (12-24)	V083 male, one day	SRR031692 Total small RNAs from Oregon R	S23 female body #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S31 s2+48 #1	SRR014280 Ovary_rep1 w1118_P	GSM379057 Krimp Mutant	GSM280087 S2cell (AGO2IP)	S19 2-4day pupae #1	V089 ago2[414] ovary total RNA	V064 ago2[414], ovary, AGO1IP	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S26 1st instar #2	SRR031699 Total small RNAs from dcr-2 homozygous flies	GSM379065 Zuc Heterozygote	S18 3rd inster #2	GSM467729 WT	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S25 1st instar #1	SRR001338 IR non-beta-eliminated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379067 SpnE Mutant	SRR029032 r2d2 knockdown	S15 S2 -48 #1	GSM379061 Squ Heterozygote	V090 CS  male total RNA	SRR014282 Ovary_rep1 wK_P	SRR032094 ago2 knockdown	S16 KC -48 #1	GSM180328 adult heads (female heads, male heads)	SRR001345 ago2 non-beta-eliminated	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379051 Armi Mutant	V075 ML-DmBG1-C1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	S20 2-4day pupae#2	SRR001664 homozygous dcr-2_untreated	V033 CMEW1 Cl.8+ cell	S17 3rd inster #1	GSM379066 Zuc Mutant	V009 CMEL1	V019 GM2 cell	V088 r2d2[1] ovary total RNA	GSM379050 Armi Heterozygote	SRR001349 heterozygous dcr-2_untreated	SRR014275 Ovary_rep1 LK_P	SRR001343 dcr-2 non-beta-eliminated	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V028 CMEW1 Cl.8+ cell	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR029028 untreated (mock)	V024 kc167 cell	V018 Kc167 cell	OSS8 Drosophila OSS cell small RNA libraries, rep4	S4 female body	V076 ML-DmBG3-C2	GSM379063 Vasa Heterozygote	GSM280084 loqs-/- ovaries (18-29nt)	OSS2 Drosophila OSS cell small RNA libraries, rep1	S1 male head	GSM379064 Vasa Mutant	GSM379053 Aub Mutant	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	SRR001344 dcr-2 beta-eliminated	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM467730 r2d2	GSM180329 adult bodies (female bodies, male bodies)	GSM379058	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	V008 S2-DRSC	S24 male body #2	GSM239051 S2 cells, beta-eliminated	SRR001341 WT_males non-beta-eliminated	GSM180335 imaginal discs	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR031693_4	GSM379056 Krimp Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR029033 lacZ knockdown	V010 MLDmD20c5	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	SRR031703 Total small RNAs from r2d2 homozygous flies	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	GSM280088 S2cell (AGO1IP)	S3 male body	SRR010959 Ago3 IP in heterozygotes	V026 1182-4H cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	S5 imaginal disc	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	S21 disk #2	GSM379062 Squ Mutant	V011 Sg4	V025 S2R+ cell	SRR010958 Piwi IP in Ago3 trans-heterozygotes	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM379060 SpnE Heterozygote	SRR029030 dcr-2 knockdown	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR032093 ago1 knockdown	GSM280085 WT testes (18-24nt)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized
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