Page generated on Fri Oct 15 12:01:37 2010

dme-mir-311




dme-mir-311

View dme-mir-311 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-3111331353343143891209281191412092814389


GCAAGACGGTGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAGTGAAAAAAAA
........................(((.(((...(((((((.((((..(((.((.((((((((.......))).))))))).)))..))))..))))))).))).))).........................-19.90
......((((.....))))...........(((((((((((.((((..(((.((.((((((((.......))).))))))).)))..))))...(((.....)))..........))))))))))).......-24.60
Sense strand
                                                                                                                                     SizeBlastTotalV066 r2d2[1], ovary, AGO1IPV098 dcr-2[L811fsX] ovaryV065 dcr-2[L811fsX], ovary, AGO1IPV063 CS,ovary,AGO1IPV088 r2d2[1] ovary total RNA  V081 embryo 2-6hrV097 CS ovaryV064 ago2[414], ovary, AGO1IPS14 0-1hr #1 (A)GSM280085 WT testes (18-24nt) S10 2-6h #1 (8)SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb GSM379065 Zuc Heterozygote V089 ago2[414] ovary total RNA  SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM379052 Aub Heterozygote SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb S9 0-1h #3 (7)SRR010959 Ago3 IP in heterozygotes GSM379066 Zuc Mutant GSM379063 Vasa Heterozygote GSM379057 Krimp Mutant SRR014280 Ovary_rep1 w1118_P GSM379064 Vasa Mutant GSM379060 SpnE Heterozygote S23 female body #2S11 2-6h #2 (9)SRR010956 Piwi IP in Ago3 heterozygotes SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb GSM379062 Squ Mutant SRR014282 Ovary_rep1 wK_P S12 6-10h #1 (10)SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM379054 Flam Heterozygote GSM379051 Armi Mutant SRR014275 Ovary_rep1 LK_P SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM379058 S13 6-10h #2 (11)GSM379050 Armi Heterozygote GSM280083 dcr-2-/- ovaries (18-29nt) SRR014277 Ovary_rep1 NA_P GSM379056 Krimp Heterozygote SRR014273 Ovary_rep1_Har_P SRR010954 Aub trans-heterozygotes, oxidized SRR010955 Aub IP in Ago3 heterozygotes GSM379053 Aub Mutant SRR010958 Piwi IP in Ago3 trans-heterozygotes S21 disk #2S34 KC+48 #1SRR010953 Aub heterozygotes, oxidized S5 imaginal discGSM379067 SpnE Mutant S4 female bodyS33 KC-48 #2GSM343287 Drosophila Toll 10b mutant embryos GSM379059 GSM467730 r2d2 GSM467729 WT V019 GM2 cellGSM379061 Squ Heterozygote GSM180331 early embryo (2-6) SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb S24 male body #2GSM280082 WT ovaries (18-29nt) GSM180330 very early embryo (0-1) V001 IR-V082 embryo 14-24hrSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 GSM379055 Flam Mutant V002 IR+SRR031696_2152 S29 male head #1V090 CS  male total RNA  S28 0-2d pupaeGSM180335 imaginal discs S27 0-1d Pupae (w)V084 female, one daySRR031697 Total small RNAs from dcr-2 heterozygous flies GSM180332 mid embryo (6-10) S19 2-4day pupae #1GSM180329 adult bodies (female bodies, male bodies) S7 12-24hr embryoS22 female head #1GSM280084 loqs-/- ovaries (18-29nt) GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) S35 KC+48 #2S3 male bodyV083 male, one daySRR029633 total small RNAs from hen1 homozygous flies S2 female headS32 s2+48 #2SRR031692 Total small RNAs from Oregon R SRR001349 heterozygous dcr-2_untreated SRR010951 Ago3 heterozygotes, oxidized SRR031699 Total small RNAs from dcr-2 homozygous flies S8 S2-48,+48, KC-48, +48 mixGSM180333 late embryo (12-24) SRR010960 wt, oxidized S30 s2-48 #2SRR010952 Ago3 trans-heterozygotes, oxidized S17 3rd inster #1GSM180328 adult heads (female heads, male heads) V009 CMEL1SRR031703 Total small RNAs from r2d2 homozygous flies S15 S2 -48 #1V011 Sg4SRR001664 homozygous dcr-2_untreated SRR001347 ago2 untreated SRR001345 ago2 non-beta-eliminated S25 1st instar #1S20 2-4day pupae#2GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries S31 s2+48 #1S18 3rd inster #2SRR001343 dcr-2 non-beta-eliminated SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies SRR032094 ago2 knockdown V076 ML-DmBG3-C2V010 MLDmD20c5OSS2 Drosophila OSS cell small RNA libraries, rep1 SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies OSS6 Drosophila OSS cell small RNA libraries, rep2 V008 S2-DRSCOSS8 Drosophila OSS cell small RNA libraries, rep4 GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM467731 loq SRR001344 dcr-2 beta-eliminated V033 CMEW1 Cl.8+ cellV018 Kc167 cellS16 KC -48 #1S1 male headGSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries V026 1182-4H cellV021 ML-DmD21 cellSRR001338 IR non-beta-eliminated SRR031701 Total small RNAs from r2d2 heterozygous flies GSM280087 S2cell (AGO2IP) S26 1st instar #2SRR031693_4 GSM280088 S2cell (AGO1IP) OSS7 Drosophila OSS cell small RNA libraries, rep3 SRR001348 ago2 oxidized V075 ML-DmBG1-C1GSM239041 fly heads, non beta-eliminated GSM280086 WT ovaries (AGO2IP) GSM239051 S2 cells, beta-eliminated SRR001341 WT_males non-beta-eliminated SRR029031 loqs-ORF knockdown SRR010957 Aub IP in Ago3 trans-heterozygotes SRR001337 WT_females beta-eliminated SRR023197 RNA Library from S2 control cells SRR032092 mock oxidized SRR029033 lacZ knockdown GSM424740 S2 pKF63 stably transfected SRR023400 total RNA extracted from P19 cells V020 S2R+ cellSRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR023402 total RNA extracted from NLS-P19 cells SRR001340 IR beta-eliminated GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries SRR001342 WT_males beta-eliminated SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies GSM246084 D. melanogaster adult male heads 454 GSM239050 fly heads, beta-eliminated SRR032095 AGO1 IP dcr2 knockdown SRR029029 dcr-1 knockdown GSM180334 larvae: 1st instar and 3rd instars V028 CMEW1 Cl.8+ cellSRR029032 r2d2 knockdown GSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownGSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 SRR001339 WT_females non-beta-eliminated SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies V025 S2R+ cellV067 S2-NPSRR023399 RNA bound by P19 protein SRR029030 dcr-2 knockdown GSM239052 S2 cells, non beta-eliminated GSM424739 S2 parental SRR029028 untreated (mock) SRR032093 ago1 knockdown V024 kc167 cellSRR001346 ago2 beta-eliminated
.....................................TCGGACGGTATATGGGTTAATA..........................................................................2215010011000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCGGACGGTATATGGGTTAA............................................................................2012010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCGGACGGTATATGGGTTAAT...........................................................................21115020014500000000000000000000000000000000000010000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCGGACGGTATATGGGTTA.............................................................................1911000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCGGACGGTATATGGGTTAATAT.........................................................................23188113134191203019003210000010100000180001100000000100000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCGGACGGTATATGGGTTAATATT........................................................................2411000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAATATTTCATTTGTCGAA............................................................3511000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAATATTTCATTTGTC...............................................................3211000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAATATTTC......................................................................2514020001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAATATT........................................................................2311223436936083612031020799180424725728278323454921201841275330868109171802134190271232152814628038416184528160866400120830385494165203708126243010315005010101010103001500200000102000100000000100000100000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAATATTTCAT....................................................................2711000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAA............................................................................191250120021001000100000000000000000000000000000021000000001000010000000000000000100000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAATA..........................................................................211243124111526192201209201247053061100000401432005102670100003500410320102100000000000100000000003000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAATATTT.......................................................................24128071003100000200000001120000001000100003000011100000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAATAT.........................................................................221143143367433275195196016710367012421150181322111112020101072418235203112235248200109607800730514222300913000001010000113000300100000000010000000000000000000000001000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAATATTTCA.....................................................................2612010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTA.............................................................................18115310120000000000010000100000000000000200000000000000000100010100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGGACGGTATATGGGTTAAT...........................................................................2011081123151011029000092000110010000000093000000000120000041002001400001000000000001100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GGACGGTATATGGGTTAATA..........................................................................2013010000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GGACGGTATATGGGTTAATAT.........................................................................21121181112300000001000000000000000000000100001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GGACGGTATATGGGTTAATATT........................................................................22113724643871601000002000046001400001100240202300263000000000300000002000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GGACGGTATATGGGTTAAT...........................................................................1912010000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GACGGTATATGGGTTAATAT.........................................................................2012100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GACGGTATATGGGTTAATATT........................................................................2115110101000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ACGGTATATGGGTTAATATT........................................................................2015000200000000000000000001000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CGGTATATGGGTTAATATT........................................................................1911000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GGTATATGGGTTAATATT........................................................................1819210000100000000000010000000000000000002000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GTATATGGGTTAATATTT.......................................................................1811000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TGGGTTAATATTTCATTTGTCG..............................................................2211000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GTTAATATTTCATTTGTC...............................................................1811000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TTTCATTTGTCGAATATATTGCACAT................................................2612000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TCATTTGTCGAATATATTGCACATTCA.............................................2711001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TGTCGAATATATTGCACATTCACCGGCC.......................................2811000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
....................................................................TCGAATATATTGCACATTCACCGGCCTGA....................................2912000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TATATTGCACATTCACCGGCCTGA....................................2411100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATATTGCACATTCACCGGCCTG.....................................22120020012103040200000000000010000000000000011000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATATTGCACATTCACCGGCCTGA....................................23134011013007110000100000000101100050000200030000000220000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATATTGCACATTCACCGGCCTGAA...................................2417000101002110000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATATTGCACATTCACCGGCCT......................................2112000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATATTGCACATTCACCGGCC.......................................2011000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATATTGCACATTCACCGGC........................................1911000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATATTGCACATTCACCGGCCTGAAA..................................2511000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATATTGCACATTCACCGGCCTGAAAA.................................2611000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGA....................................2219836095334829765264205104351128124299319216282046179921711879161016601523132814461368126712681100135912831258934114310401071100497494295683899596388157978772082180065171265922636585592366508133113914403454221020721218419317617391170150144809787941168944364246583039343635341829241818222516191688157413677756633654343144313132320222221222210101111000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGAAAA.................................25145833722266171311340190140131110921903667689010001211311221374085341001051005201502030300000001000002000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGAAA..................................2412501221081221462610938582217210361223114370733547134826551921014556531693910411651201425262206191831211272219761214008322290130122657006131251324143201021100102001000001000100000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCT......................................20115484619656913306333638214192441514222507113010845150146019121128101642196211214944016014554622117828231225314011202100733302141004002200000000000010000020000000000020100000010000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGAAAATATCAA...........................3111000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTG.....................................21186663573384184182713032402723487231961851512131501291382361196195164936941926144149528570119488172591013639605475689910261208341149605181353230128731411729153342242081622132422215231113172535391077411532510531311101224111111300010011000100000000000010000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGAAAATATCAAGAAT.......................3511000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGAAAATATCAAG..........................3211000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGAAAATATCAAGAA........................3411000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGAA...................................23164422711953944175345010323337368135410395846658317513332415141362731611359947171482913413125331126128472127172428715429849110411263958654932347504176673101716815168091174331156274612261130120010010000001010000200010000001000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGAAAAT................................2611010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGC........................................1815107310835230100346323303414609400022101033002040010210190020001100300013500050300000100200000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCC.......................................19193820002000151101002130010100000111010000001203101500020003241000222230004000001000000000010000000000000400060310020000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGAAAATA...............................2712000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTGCACATTCACCGGCCTGAAAATATCAAGA.........................3312000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................ATTGCACATTCACCGGCCT......................................19113200002000100000000000100000000000000000000000010000050000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................ATTGCACATTCACCGGCCTGAAAA.................................24111001100011000000010001000000000000000010000000003000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................ATTGCACATTCACCGGCCTGA....................................21177620703134402244392623271312151291912265101468762024109141074776427832310145152034428111141011311201301030003000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
............................................................................ATTGCACATTCACCGGCCTGAAA..................................2311022563145244150120010400101037411000001050031000002011012000100000002000010100000000100000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................ATTGCACATTCACCGGCCTG.....................................20166211220150606404021000200000001000000021000000130003220000700010001001000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................ATTGCACATTCACCGGCC.......................................181230000000001000000000000000000000000000000000000130000080000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................ATTGCACATTCACCGGCCTGAA...................................221266369281951281652211001401020210313210630032111000170200103032106000000210301000020000000000100001000010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGCACATTCACCGGCCTGAA...................................2118100000001200000000000000000000000000000000000000001100010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGCACATTCACCGGCCTGA....................................2019722481003165500001081100001111000050100000080300000103000030000000100000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGCACATTCACCGGCCTGAAA..................................2215000000000020000000000000000000000000000010000000001000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGCACATTCACCGGCCTG.....................................1919000000001000000010010000010000000000000020000000001001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTGCACATTCACCGGCCTGAAAA.................................2311000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TGCACATTCACCGGCCTGA....................................19114011401010200000000000102000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TGCACATTCACCGGCCTGAA...................................2012000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GCACATTCACCGGCCTGAA...................................1913100000010000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GCACATTCACCGGCCTGAAA..................................2011000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GCACATTCACCGGCCTGA....................................18133422100001024000000210001000030100112020010100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CACATTCACCGGCCTGAAA..................................1911000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CACATTCACCGGCCTGAA...................................1811000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ACATTCACCGGCCTGAAA..................................1812001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CATTCACCGGCCTGAAAA.................................1811000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                     SizeBlastTotalV066 r2d2[1], ovary, AGO1IPV098 dcr-2[L811fsX] ovaryV065 dcr-2[L811fsX], ovary, AGO1IPV063 CS,ovary,AGO1IPV088 r2d2[1] ovary total RNA  V081 embryo 2-6hrV097 CS ovaryV064 ago2[414], ovary, AGO1IPS14 0-1hr #1 (A)GSM280085 WT testes (18-24nt) S10 2-6h #1 (8)SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb GSM379065 Zuc Heterozygote V089 ago2[414] ovary total RNA  SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM379052 Aub Heterozygote SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb S9 0-1h #3 (7)SRR010959 Ago3 IP in heterozygotes GSM379066 Zuc Mutant GSM379063 Vasa Heterozygote GSM379057 Krimp Mutant SRR014280 Ovary_rep1 w1118_P GSM379064 Vasa Mutant GSM379060 SpnE Heterozygote S23 female body #2S11 2-6h #2 (9)SRR010956 Piwi IP in Ago3 heterozygotes SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb GSM379062 Squ Mutant SRR014282 Ovary_rep1 wK_P S12 6-10h #1 (10)SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM379054 Flam Heterozygote GSM379051 Armi Mutant SRR014275 Ovary_rep1 LK_P SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM379058 S13 6-10h #2 (11)GSM379050 Armi Heterozygote GSM280083 dcr-2-/- ovaries (18-29nt) SRR014277 Ovary_rep1 NA_P GSM379056 Krimp Heterozygote SRR014273 Ovary_rep1_Har_P SRR010954 Aub trans-heterozygotes, oxidized SRR010955 Aub IP in Ago3 heterozygotes GSM379053 Aub Mutant SRR010958 Piwi IP in Ago3 trans-heterozygotes S21 disk #2S34 KC+48 #1SRR010953 Aub heterozygotes, oxidized S5 imaginal discGSM379067 SpnE Mutant S4 female bodyS33 KC-48 #2GSM343287 Drosophila Toll 10b mutant embryos GSM379059 GSM467730 r2d2 GSM467729 WT V019 GM2 cellGSM379061 Squ Heterozygote GSM180331 early embryo (2-6) SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb S24 male body #2GSM280082 WT ovaries (18-29nt) GSM180330 very early embryo (0-1) V001 IR-V082 embryo 14-24hrSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 GSM379055 Flam Mutant V002 IR+SRR031696_2152 S29 male head #1V090 CS  male total RNA  S28 0-2d pupaeGSM180335 imaginal discs S27 0-1d Pupae (w)V084 female, one daySRR031697 Total small RNAs from dcr-2 heterozygous flies GSM180332 mid embryo (6-10) S19 2-4day pupae #1GSM180329 adult bodies (female bodies, male bodies) S7 12-24hr embryoS22 female head #1GSM280084 loqs-/- ovaries (18-29nt) GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) S35 KC+48 #2S3 male bodyV083 male, one daySRR029633 total small RNAs from hen1 homozygous flies S2 female headS32 s2+48 #2SRR031692 Total small RNAs from Oregon R SRR001349 heterozygous dcr-2_untreated SRR010951 Ago3 heterozygotes, oxidized SRR031699 Total small RNAs from dcr-2 homozygous flies S8 S2-48,+48, KC-48, +48 mixGSM180333 late embryo (12-24) SRR010960 wt, oxidized S30 s2-48 #2SRR010952 Ago3 trans-heterozygotes, oxidized S17 3rd inster #1GSM180328 adult heads (female heads, male heads) V009 CMEL1SRR031703 Total small RNAs from r2d2 homozygous flies S15 S2 -48 #1V011 Sg4SRR001664 homozygous dcr-2_untreated SRR001347 ago2 untreated SRR001345 ago2 non-beta-eliminated S25 1st instar #1S20 2-4day pupae#2GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries S31 s2+48 #1S18 3rd inster #2SRR001343 dcr-2 non-beta-eliminated SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies SRR032094 ago2 knockdown V076 ML-DmBG3-C2V010 MLDmD20c5OSS2 Drosophila OSS cell small RNA libraries, rep1 SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies OSS6 Drosophila OSS cell small RNA libraries, rep2 V008 S2-DRSCOSS8 Drosophila OSS cell small RNA libraries, rep4 GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM467731 loq SRR001344 dcr-2 beta-eliminated V033 CMEW1 Cl.8+ cellV018 Kc167 cellS16 KC -48 #1S1 male headGSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries V026 1182-4H cellV021 ML-DmD21 cellSRR001338 IR non-beta-eliminated SRR031701 Total small RNAs from r2d2 heterozygous flies GSM280087 S2cell (AGO2IP) S26 1st instar #2SRR031693_4 GSM280088 S2cell (AGO1IP) OSS7 Drosophila OSS cell small RNA libraries, rep3 SRR001348 ago2 oxidized V075 ML-DmBG1-C1GSM239041 fly heads, non beta-eliminated GSM280086 WT ovaries (AGO2IP) GSM239051 S2 cells, beta-eliminated SRR001341 WT_males non-beta-eliminated SRR029031 loqs-ORF knockdown SRR010957 Aub IP in Ago3 trans-heterozygotes SRR001337 WT_females beta-eliminated SRR023197 RNA Library from S2 control cells SRR032092 mock oxidized SRR029033 lacZ knockdown GSM424740 S2 pKF63 stably transfected SRR023400 total RNA extracted from P19 cells V020 S2R+ cellSRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR023402 total RNA extracted from NLS-P19 cells SRR001340 IR beta-eliminated GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries SRR001342 WT_males beta-eliminated SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies GSM246084 D. melanogaster adult male heads 454 GSM239050 fly heads, beta-eliminated SRR032095 AGO1 IP dcr2 knockdown SRR029029 dcr-1 knockdown GSM180334 larvae: 1st instar and 3rd instars V028 CMEW1 Cl.8+ cellSRR029032 r2d2 knockdown GSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownGSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 SRR001339 WT_females non-beta-eliminated SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies V025 S2R+ cellV067 S2-NPSRR023399 RNA bound by P19 protein SRR029030 dcr-2 knockdown GSM239052 S2 cells, non beta-eliminated GSM424739 S2 parental SRR029028 untreated (mock) SRR032093 ago1 knockdown V024 kc167 cellSRR001346 ago2 beta-eliminated
.................................................TGGGTTAATATTTCATTTGTCGAATATA........................................................2811000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATATTGCACATTCACCGGCCT......................................2111000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TCAAGAATTAACATCGAAAAGTGA.......2411000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000