Page generated on Fri Oct 15 12:01:36 2010

dme-mir-313



dme-mir-313

View dme-mir-313 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-313	120	138378	1	1	80783	3	57529	3	60	17	57529	80783

TACCCGACATCGTTCTAGCCAACAATTTTCTGCTGCGGATGGGGGCAGTACTGTTTTTTTAACATTGAGTATTGCACTTTTCACAGCCCGAAAATGTTAGCAACTGCCTTATACTAACAA
........................((((((.((((.(((.((..(((((((((((.....)))....)))))))).)).))).))))..)))))).........................-21.60
.................((.((((.(((((.((((.(((.((..(((((((((((.....)))....)))))))).)).))).))))..))))))))).))...................-27.70
Sense strand

	Size	Blast	Total	V081 embryo 2-6hr	V097 CS ovary	V098 dcr-2[L811fsX] ovary	GSM343287 Drosophila Toll 10b mutant embryos	V065 dcr-2[L811fsX], ovary, AGO1IP	V066 r2d2[1], ovary, AGO1IP	V088 r2d2[1] ovary total RNA	V063 CS,ovary,AGO1IP	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S10 2-6h #1 (8)	V064 ago2[414], ovary, AGO1IP	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V089 ago2[414] ovary total RNA	S14 0-1hr #1 (A)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014275 Ovary_rep1 LK_P	SRR014280 Ovary_rep1 w1118_P	S9 0-1h #3 (7)	GSM379052 Aub Heterozygote	GSM379066 Zuc Mutant	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014273 Ovary_rep1_Har_P	SRR014282 Ovary_rep1 wK_P	GSM379060 SpnE Heterozygote	GSM379062 Squ Mutant	S13 6-10h #2 (11)	S12 6-10h #1 (10)	GSM379050 Armi Heterozygote	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR014277 Ovary_rep1 NA_P	GSM379054 Flam Heterozygote	GSM379063 Vasa Heterozygote	GSM379058	GSM379064 Vasa Mutant	GSM280083 dcr-2-/- ovaries (18-29nt)	S11 2-6h #2 (9)	GSM379056 Krimp Heterozygote	GSM379051 Armi Mutant	GSM379065 Zuc Heterozygote	S23 female body #2	GSM379053 Aub Mutant	GSM280082 WT ovaries (18-29nt)	S21 disk #2	GSM379057 Krimp Mutant	S34 KC+48 #1	S5 imaginal disc	V002 IR+	GSM280085 WT testes (18-24nt)	V001 IR-	V082 embryo 14-24hr	S33 KC-48 #2	S4 female body	GSM379067 SpnE Mutant	GSM379059	GSM379061 Squ Heterozygote	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM180331 early embryo (2-6)	SRR010956 Piwi IP in Ago3 heterozygotes	V019 GM2 cell	S29 male head #1	GSM180330 very early embryo (0-1)	SRR010959 Ago3 IP in heterozygotes	GSM379055 Flam Mutant	SRR010955 Aub IP in Ago3 heterozygotes	S24 male body #2	SRR010954 Aub trans-heterozygotes, oxidized	S7 12-24hr embryo	V090 CS  male total RNA	GSM180332 mid embryo (6-10)	V084 female, one day	SRR010953 Aub heterozygotes, oxidized	V083 male, one day	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280084 loqs-/- ovaries (18-29nt)	GSM180335 imaginal discs	S19 2-4day pupae #1	S22 female head #1	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	S28 0-2d pupae	SRR031696_2152	S32 s2+48 #2	GSM467730 r2d2	GSM180329 adult bodies (female bodies, male bodies)	S2 female head	GSM467729 WT	V011 Sg4	S25 1st instar #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S8 S2-48,+48, KC-48, +48 mix	S30 s2-48 #2	S35 KC+48 #2	GSM180333 late embryo (12-24)	S17 3rd inster #1	S26 1st instar #2	SRR032094 ago2 knockdown	S27 0-1d Pupae (w)	S3 male body	SRR031692 Total small RNAs from Oregon R	S18 3rd inster #2	V009 CMEL1	GSM467731 loq	GSM280087 S2cell (AGO2IP)	SRR029633 total small RNAs from hen1 homozygous flies	SRR010960 wt, oxidized	V026 1182-4H cell	V075 ML-DmBG1-C1	V018 Kc167 cell	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V067 S2-NP	SRR031699 Total small RNAs from dcr-2 homozygous flies	S16 KC -48 #1	GSM180328 adult heads (female heads, male heads)	S31 s2+48 #1	V076 ML-DmBG3-C2	SRR001349 heterozygous dcr-2_untreated	S15 S2 -48 #1	S20 2-4day pupae#2	SRR001664 homozygous dcr-2_untreated	V033 CMEW1 Cl.8+ cell	SRR010951 Ago3 heterozygotes, oxidized	OSS8 Drosophila OSS cell small RNA libraries, rep4	V010 MLDmD20c5	SRR001345 ago2 non-beta-eliminated	V020 S2R+ cell	SRR031703 Total small RNAs from r2d2 homozygous flies	OSS2 Drosophila OSS cell small RNA libraries, rep1	S1 male head	V028 CMEW1 Cl.8+ cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001338 IR non-beta-eliminated	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR029028 untreated (mock)	V024 kc167 cell	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	V008 S2-DRSC	GSM239051 S2 cells, beta-eliminated	SRR001341 WT_males non-beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR031693_4	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR032095 AGO1 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	GSM280088 S2cell (AGO1IP)	SRR029032 r2d2 knockdown	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	V025 S2R+ cell	SRR023399 RNA bound by P19 protein	SRR029030 dcr-2 knockdown	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR032093 ago1 knockdown	SRR001346 ago2 beta-eliminated
...........GTTCTAGCCAACAATTTTC..........................................................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTCTGCTGCGGATGGGGGCAG........................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCTGCTGCGGATGGGGGCAG........................................................................	20	1	4	0	0	1	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCTGCTGCGGATGGGGGCAGTA......................................................................	22	1	15	1	2	4	0	1	0	0	0	0	2	0	0	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCTGCTGCGGATGGGGGCAGTACTG...................................................................	25	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCTGCTGCGGATGGGGGCA.........................................................................	19	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCTGCTGCGGATGGGGGCAGTAC.....................................................................	23	1	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCTGCTGCGGATGGGGGCAGTACT....................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CTGCTGCGGATGGGGGCAGT.......................................................................	20	1	834	160	60	54	229	3	4	9	8	13	18	5	23	6	11	7	9	11	12	11	9	7	12	3	4	13	9	4	6	0	25	12	3	5	9	5	2	2	1	5	0	3	1	5	0	1	8	1	0	0	0	3	0	2	6	0	1	1	0	0	4	1	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CTGCTGCGGATGGGGGCAG........................................................................	19	1	604	39	86	84	49	0	0	1	2	21	5	0	55	9	6	23	3	4	16	9	9	5	7	9	6	33	12	6	9	3	12	2	6	23	2	5	1	2	0	4	1	2	3	0	0	3	6	1	0	0	0	9	0	4	1	0	0	1	1	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CTGCTGCGGATGGGGGCAGTA......................................................................	21	1	2495	443	398	316	19	15	19	19	12	88	51	13	137	82	39	36	51	42	40	87	55	23	5	11	21	53	47	26	14	10	34	37	13	52	26	10	1	14	3	4	23	3	6	5	1	3	10	3	2	0	1	18	0	10	13	0	0	5	3	4	1	3	1	0	2	0	0	3	1	0	0	1	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CTGCTGCGGATGGGGGCAGTACT....................................................................	23	1	5391	422	1128	973	0	54	144	134	42	83	90	72	137	212	40	63	216	139	99	183	112	74	14	20	86	33	74	97	45	46	23	12	34	122	55	27	2	53	10	26	14	14	9	9	6	5	17	5	2	2	6	15	1	10	7	2	5	1	2	4	10	2	8	1	4	3	1	3	0	2	0	0	1	2	7	1	4	0	0	1	0	0	2	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CTGCTGCGGATGGGGGCAGTACTG...................................................................	24	1	12	2	3	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................ATTGCACTTTTCACAGCCCGA.............................	21	1	156	6	7	6	0	17	11	6	18	6	0	16	3	0	3	4	3	2	13	4	2	3	0	1	0	0	1	3	1	1	0	0	0	4	0	1	2	1	2	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................ATTGCACTTTTCACAGCCCGAAA...........................	23	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................ATTGCACTTTTCACAGCCCGAA............................	22	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................ATTGCACTTTTCACAGCCCG..............................	20	1	14	0	1	1	0	1	1	0	1	0	0	4	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TTGCACTTTTCACAGCCCGA.............................	20	1	47	2	0	3	0	3	2	2	3	2	0	1	1	0	0	0	0	3	0	0	0	5	0	0	0	0	1	0	1	1	0	0	1	0	1	0	2	0	0	1	2	1	1	1	0	0	0	0	2	0	1	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TTGCACTTTTCACAGCCCGAA............................	21	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TTGCACTTTTCACAGCCCG..............................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TTGCACTTTTCACAGCCCGAAA...........................	22	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TGCACTTTTCACAGCCCG..............................	18	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TGCACTTTTCACAGCCCGA.............................	19	1	10	0	0	1	0	0	1	1	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GCACTTTTCACAGCCCGAAA...........................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GCACTTTTCACAGCCCGA.............................	18	1	31	0	0	1	0	0	0	0	0	5	0	2	2	0	1	0	4	6	4	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CAGCCCGAAAATGTTAGCAA.................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AAATGTTAGCAACTGCCTTATACT.....	24	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AAATGTTAGCAACTGCCTT..........	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V081 embryo 2-6hr	V097 CS ovary	V098 dcr-2[L811fsX] ovary	GSM343287 Drosophila Toll 10b mutant embryos	V065 dcr-2[L811fsX], ovary, AGO1IP	V066 r2d2[1], ovary, AGO1IP	V088 r2d2[1] ovary total RNA	V063 CS,ovary,AGO1IP	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S10 2-6h #1 (8)	V064 ago2[414], ovary, AGO1IP	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V089 ago2[414] ovary total RNA	S14 0-1hr #1 (A)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014275 Ovary_rep1 LK_P	SRR014280 Ovary_rep1 w1118_P	S9 0-1h #3 (7)	GSM379052 Aub Heterozygote	GSM379066 Zuc Mutant	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014273 Ovary_rep1_Har_P	SRR014282 Ovary_rep1 wK_P	GSM379060 SpnE Heterozygote	GSM379062 Squ Mutant	S13 6-10h #2 (11)	S12 6-10h #1 (10)	GSM379050 Armi Heterozygote	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR014277 Ovary_rep1 NA_P	GSM379054 Flam Heterozygote	GSM379063 Vasa Heterozygote	GSM379058	GSM379064 Vasa Mutant	GSM280083 dcr-2-/- ovaries (18-29nt)	S11 2-6h #2 (9)	GSM379056 Krimp Heterozygote	GSM379051 Armi Mutant	GSM379065 Zuc Heterozygote	S23 female body #2	GSM379053 Aub Mutant	GSM280082 WT ovaries (18-29nt)	S21 disk #2	GSM379057 Krimp Mutant	S34 KC+48 #1	S5 imaginal disc	V002 IR+	GSM280085 WT testes (18-24nt)	V001 IR-	V082 embryo 14-24hr	S33 KC-48 #2	S4 female body	GSM379067 SpnE Mutant	GSM379059	GSM379061 Squ Heterozygote	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM180331 early embryo (2-6)	SRR010956 Piwi IP in Ago3 heterozygotes	V019 GM2 cell	S29 male head #1	GSM180330 very early embryo (0-1)	SRR010959 Ago3 IP in heterozygotes	GSM379055 Flam Mutant	SRR010955 Aub IP in Ago3 heterozygotes	S24 male body #2	SRR010954 Aub trans-heterozygotes, oxidized	S7 12-24hr embryo	V090 CS  male total RNA	GSM180332 mid embryo (6-10)	V084 female, one day	SRR010953 Aub heterozygotes, oxidized	V083 male, one day	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280084 loqs-/- ovaries (18-29nt)	GSM180335 imaginal discs	S19 2-4day pupae #1	S22 female head #1	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	S28 0-2d pupae	SRR031696_2152	S32 s2+48 #2	GSM467730 r2d2	GSM180329 adult bodies (female bodies, male bodies)	S2 female head	GSM467729 WT	V011 Sg4	S25 1st instar #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S8 S2-48,+48, KC-48, +48 mix	S30 s2-48 #2	S35 KC+48 #2	GSM180333 late embryo (12-24)	S17 3rd inster #1	S26 1st instar #2	SRR032094 ago2 knockdown	S27 0-1d Pupae (w)	S3 male body	SRR031692 Total small RNAs from Oregon R	S18 3rd inster #2	V009 CMEL1	GSM467731 loq	GSM280087 S2cell (AGO2IP)	SRR029633 total small RNAs from hen1 homozygous flies	SRR010960 wt, oxidized	V026 1182-4H cell	V075 ML-DmBG1-C1	V018 Kc167 cell	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V067 S2-NP	SRR031699 Total small RNAs from dcr-2 homozygous flies	S16 KC -48 #1	GSM180328 adult heads (female heads, male heads)	S31 s2+48 #1	V076 ML-DmBG3-C2	SRR001349 heterozygous dcr-2_untreated	S15 S2 -48 #1	S20 2-4day pupae#2	SRR001664 homozygous dcr-2_untreated	V033 CMEW1 Cl.8+ cell	SRR010951 Ago3 heterozygotes, oxidized	OSS8 Drosophila OSS cell small RNA libraries, rep4	V010 MLDmD20c5	SRR001345 ago2 non-beta-eliminated	V020 S2R+ cell	SRR031703 Total small RNAs from r2d2 homozygous flies	OSS2 Drosophila OSS cell small RNA libraries, rep1	S1 male head	V028 CMEW1 Cl.8+ cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001338 IR non-beta-eliminated	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR029028 untreated (mock)	V024 kc167 cell	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	V008 S2-DRSC	GSM239051 S2 cells, beta-eliminated	SRR001341 WT_males non-beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR031693_4	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR032095 AGO1 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	GSM280088 S2cell (AGO1IP)	SRR029032 r2d2 knockdown	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	V025 S2R+ cell	SRR023399 RNA bound by P19 protein	SRR029030 dcr-2 knockdown	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR032093 ago1 knockdown	SRR001346 ago2 beta-eliminated
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