Page generated on Fri Oct 15 12:01:42 2010

dme-mir-314



dme-mir-314

View dme-mir-314 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-314	139	56019			438	118	55278	17	168	41	55278	438

AGCAGTGTTTTGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAACTTACCTAGTTGAGGAAAACTCCCATGTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATTTTATCTTTT
..........................((.(((((((.(((((.((((..((((.....((((.(((.(((......))).)))....)))).)))))))))))))))))))))).........................-29.80
.((...(((((((((............(.(((((((.(((((.((((..((((.....((((.(((.(((......))).)))....)))).)))))))))))))))))))))))))).))))..))............-36.40
Sense strand

	Size	Blast	Total	V090 CS  male total RNA	V002 IR+	V001 IR-	V084 female, one day	V083 male, one day	V082 embryo 14-24hr	V098 dcr-2[L811fsX] ovary	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S24 male body #2	V097 CS ovary	S19 2-4day pupae #1	S28 0-2d pupae	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031696_2152	S23 female body #2	V089 ago2[414] ovary total RNA	V063 CS,ovary,AGO1IP	V088 r2d2[1] ovary total RNA	S9 0-1h #3 (7)	S21 disk #2	V065 dcr-2[L811fsX], ovary, AGO1IP	V064 ago2[414], ovary, AGO1IP	V066 r2d2[1], ovary, AGO1IP	S17 3rd inster #1	S5 imaginal disc	S7 12-24hr embryo	SRR029633 total small RNAs from hen1 homozygous flies	GSM379064 Vasa Mutant	SRR010959 Ago3 IP in heterozygotes	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031692 Total small RNAs from Oregon R	SRR031699 Total small RNAs from dcr-2 homozygous flies	GSM280084 loqs-/- ovaries (18-29nt)	GSM379059	S4 female body	GSM379050 Armi Heterozygote	S3 male body	S35 KC+48 #2	V081 embryo 2-6hr	GSM379057 Krimp Mutant	GSM180333 late embryo (12-24)	S27 0-1d Pupae (w)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR010955 Aub IP in Ago3 heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379051 Armi Mutant	GSM180335 imaginal discs	GSM379061 Squ Heterozygote	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR032092 mock oxidized	S10 2-6h #1 (8)	S26 1st instar #2	S32 s2+48 #2	S25 1st instar #1	SRR014280 Ovary_rep1 w1118_P	SRR001347 ago2 untreated	GSM379052 Aub Heterozygote	SRR001664 homozygous dcr-2_untreated	GSM467729 WT	S34 KC+48 #1	GSM467730 r2d2	GSM180329 adult bodies (female bodies, male bodies)	S29 male head #1	GSM180334 larvae: 1st instar and 3rd instars	SRR029032 r2d2 knockdown	GSM280085 WT testes (18-24nt)	SRR029033 lacZ knockdown	SRR010954 Aub trans-heterozygotes, oxidized	S18 3rd inster #2	GSM379063 Vasa Heterozygote	GSM379060 SpnE Heterozygote	GSM379058	GSM467731 loq	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR029030 dcr-2 knockdown	SRR032094 ago2 knockdown	S13 6-10h #2 (11)	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM379054 Flam Heterozygote	V011 Sg4	GSM280082 WT ovaries (18-29nt)	SRR001338 IR non-beta-eliminated	SRR010960 wt, oxidized	SRR029029 dcr-1 knockdown	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM379062 Squ Mutant	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR001349 heterozygous dcr-2_untreated	S20 2-4day pupae#2	V019 GM2 cell	GSM379065 Zuc Heterozygote	V076 ML-DmBG3-C2	SRR014275 Ovary_rep1 LK_P	SRR029028 untreated (mock)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR010953 Aub heterozygotes, oxidized	GSM379056 Krimp Heterozygote	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S8 S2-48,+48, KC-48, +48 mix	GSM343287 Drosophila Toll 10b mutant embryos	SRR032093 ago1 knockdown	GSM280087 S2cell (AGO2IP)	SRR001348 ago2 oxidized	S12 6-10h #1 (10)	SRR010951 Ago3 heterozygotes, oxidized	GSM379067 SpnE Mutant	V033 CMEW1 Cl.8+ cell	GSM379066 Zuc Mutant	SRR014282 Ovary_rep1 wK_P	V009 CMEL1	SRR014273 Ovary_rep1_Har_P	GSM379055 Flam Mutant	V075 ML-DmBG1-C1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR029031 loqs-ORF knockdown	GSM379053 Aub Mutant	S22 female head #1	S2 female head	V018 Kc167 cell	S16 KC -48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	V028 CMEW1 Cl.8+ cell	V021 ML-DmD21 cell	SRR001339 WT_females non-beta-eliminated	S11 2-6h #2 (9)	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031693_4	SRR001345 ago2 non-beta-eliminated	S33 KC-48 #2	GSM239050 fly heads, beta-eliminated	SRR032095 AGO1 IP dcr2 knockdown	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR001344 dcr-2 beta-eliminated	S30 s2-48 #2	GSM239052 S2 cells, non beta-eliminated	GSM280086 WT ovaries (AGO2IP)	V008 S2-DRSC	GSM239051 S2 cells, beta-eliminated	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	GSM180328 adult heads (female heads, male heads)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	V010 MLDmD20c5	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM246084 D. melanogaster adult male heads 454	GSM280088 S2cell (AGO1IP)	V026 1182-4H cell	GSM180331 early embryo (2-6)	SRR014277 Ovary_rep1 NA_P	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V067 S2-NP	SRR023399 RNA bound by P19 protein	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	V024 kc167 cell	SRR001346 ago2 beta-eliminated
........................ATCGTAACTTGTGTGGCTTCGA.............................................................................................	22	1	7	0	1	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATCGTAACTTGTGTGGCT.................................................................................................	18	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATCGTAACTTGTGTGGCTTCGAACT..........................................................................................	25	1	3	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATCGTAACTTGTGTGGCTTC...............................................................................................	20	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATCGTAACTTGTGTGGCTTCG..............................................................................................	21	1	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TCGTAACTTGTGTGGCTTCGAACTTA........................................................................................	26	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGTAACTTGTGTGGCTTCG..............................................................................................	19	1	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGTAACTTGTGTGGCTTCGAACTT.........................................................................................	24	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGTAACTTGTGTGGCTTCGAACTTACC......................................................................................	27	1	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GTAACTTGTGTGGCTTCGAAC...........................................................................................	21	1	5	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GTAACTTGTGTGGCTTCGAA............................................................................................	20	1	9	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................GGCCACGAATTCGCATTTTATCTTTT	26	1	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GGCCACGAATTCGCATTTTAT.....	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GGCCACGAATTCGCATTTT.......	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GGCCACGAATTCGCATTT........	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GGCCACGAATTCGCATTTTATCTTT.	25	1	6	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................CACGAATTCGCATTTTATCTTT.	22	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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Antisense strand

	Size	Blast	Total	V090 CS  male total RNA	V002 IR+	V001 IR-	V084 female, one day	V083 male, one day	V082 embryo 14-24hr	V098 dcr-2[L811fsX] ovary	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S24 male body #2	V097 CS ovary	S19 2-4day pupae #1	S28 0-2d pupae	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031696_2152	S23 female body #2	V089 ago2[414] ovary total RNA	V063 CS,ovary,AGO1IP	V088 r2d2[1] ovary total RNA	S9 0-1h #3 (7)	S21 disk #2	V065 dcr-2[L811fsX], ovary, AGO1IP	V064 ago2[414], ovary, AGO1IP	V066 r2d2[1], ovary, AGO1IP	S17 3rd inster #1	S5 imaginal disc	S7 12-24hr embryo	SRR029633 total small RNAs from hen1 homozygous flies	GSM379064 Vasa Mutant	SRR010959 Ago3 IP in heterozygotes	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031692 Total small RNAs from Oregon R	SRR031699 Total small RNAs from dcr-2 homozygous flies	GSM280084 loqs-/- ovaries (18-29nt)	GSM379059	S4 female body	GSM379050 Armi Heterozygote	S3 male body	S35 KC+48 #2	V081 embryo 2-6hr	GSM379057 Krimp Mutant	GSM180333 late embryo (12-24)	S27 0-1d Pupae (w)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR010955 Aub IP in Ago3 heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379051 Armi Mutant	GSM180335 imaginal discs	GSM379061 Squ Heterozygote	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR032092 mock oxidized	S10 2-6h #1 (8)	S26 1st instar #2	S32 s2+48 #2	S25 1st instar #1	SRR014280 Ovary_rep1 w1118_P	SRR001347 ago2 untreated	GSM379052 Aub Heterozygote	SRR001664 homozygous dcr-2_untreated	GSM467729 WT	S34 KC+48 #1	GSM467730 r2d2	GSM180329 adult bodies (female bodies, male bodies)	S29 male head #1	GSM180334 larvae: 1st instar and 3rd instars	SRR029032 r2d2 knockdown	GSM280085 WT testes (18-24nt)	SRR029033 lacZ knockdown	SRR010954 Aub trans-heterozygotes, oxidized	S18 3rd inster #2	GSM379063 Vasa Heterozygote	GSM379060 SpnE Heterozygote	GSM379058	GSM467731 loq	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR029030 dcr-2 knockdown	SRR032094 ago2 knockdown	S13 6-10h #2 (11)	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM379054 Flam Heterozygote	V011 Sg4	GSM280082 WT ovaries (18-29nt)	SRR001338 IR non-beta-eliminated	SRR010960 wt, oxidized	SRR029029 dcr-1 knockdown	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM379062 Squ Mutant	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR001349 heterozygous dcr-2_untreated	S20 2-4day pupae#2	V019 GM2 cell	GSM379065 Zuc Heterozygote	V076 ML-DmBG3-C2	SRR014275 Ovary_rep1 LK_P	SRR029028 untreated (mock)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR010953 Aub heterozygotes, oxidized	GSM379056 Krimp Heterozygote	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S8 S2-48,+48, KC-48, +48 mix	GSM343287 Drosophila Toll 10b mutant embryos	SRR032093 ago1 knockdown	GSM280087 S2cell (AGO2IP)	SRR001348 ago2 oxidized	S12 6-10h #1 (10)	SRR010951 Ago3 heterozygotes, oxidized	GSM379067 SpnE Mutant	V033 CMEW1 Cl.8+ cell	GSM379066 Zuc Mutant	SRR014282 Ovary_rep1 wK_P	V009 CMEL1	SRR014273 Ovary_rep1_Har_P	GSM379055 Flam Mutant	V075 ML-DmBG1-C1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR029031 loqs-ORF knockdown	GSM379053 Aub Mutant	S22 female head #1	S2 female head	V018 Kc167 cell	S16 KC -48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	V028 CMEW1 Cl.8+ cell	V021 ML-DmD21 cell	SRR001339 WT_females non-beta-eliminated	S11 2-6h #2 (9)	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031693_4	SRR001345 ago2 non-beta-eliminated	S33 KC-48 #2	GSM239050 fly heads, beta-eliminated	SRR032095 AGO1 IP dcr2 knockdown	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR001344 dcr-2 beta-eliminated	S30 s2-48 #2	GSM239052 S2 cells, non beta-eliminated	GSM280086 WT ovaries (AGO2IP)	V008 S2-DRSC	GSM239051 S2 cells, beta-eliminated	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	GSM180328 adult heads (female heads, male heads)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	V010 MLDmD20c5	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM246084 D. melanogaster adult male heads 454	GSM280088 S2cell (AGO1IP)	V026 1182-4H cell	GSM180331 early embryo (2-6)	SRR014277 Ovary_rep1 NA_P	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V067 S2-NP	SRR023399 RNA bound by P19 protein	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	V024 kc167 cell	SRR001346 ago2 beta-eliminated