Page generated on Fri Oct 15 12:01:39 2010

dme-mir-315



dme-mir-315

View dme-mir-315 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-315	133	94473		1	88842	94	5536			19	88842	5536

TTTTATATAAGAGTTCCTTCACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTGTTTACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGCTGACGATTTCA
.........................(((((((....(((..((((((((((.(((((((...((((.....)))).)))))))))))))))))..)))....)))))))........................-34.80
..........(((.((......((((((((((....(((..((((((((((.(((((((...((((.....)))).)))))))))))))))))..)))....))))))).)))..(((....))).)).))).-41.30
Sense strand

	Size	Blast	Total	V082 embryo 14-24hr	V001 IR-	SRR031696_2152	SRR031703 Total small RNAs from r2d2 homozygous flies	V002 IR+	SRR029633 total small RNAs from hen1 homozygous flies	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR001345 ago2 non-beta-eliminated	SRR031692 Total small RNAs from Oregon R	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V009 CMEL1	SRR031699 Total small RNAs from dcr-2 homozygous flies	S29 male head #1	V081 embryo 2-6hr	V090 CS  male total RNA	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR001349 heterozygous dcr-2_untreated	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR031693_4	SRR001338 IR non-beta-eliminated	SRR001344 dcr-2 beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001343 dcr-2 non-beta-eliminated	SRR001664 homozygous dcr-2_untreated	SRR001347 ago2 untreated	S5 imaginal disc	S12 6-10h #1 (10)	S21 disk #2	V083 male, one day	S13 6-10h #2 (11)	S28 0-2d pupae	S22 female head #1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S7 12-24hr embryo	V019 GM2 cell	V084 female, one day	GSM180335 imaginal discs	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S27 0-1d Pupae (w)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S2 female head	V008 S2-DRSC	SRR001348 ago2 oxidized	S26 1st instar #2	S19 2-4day pupae #1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM180328 adult heads (female heads, male heads)	GSM180333 late embryo (12-24)	V076 ML-DmBG3-C2	V028 CMEW1 Cl.8+ cell	V033 CMEW1 Cl.8+ cell	V018 Kc167 cell	SRR001337 WT_females beta-eliminated	S25 1st instar #1	S1 male head	SRR001346 ago2 beta-eliminated	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM180332 mid embryo (6-10)	V063 CS,ovary,AGO1IP	SRR032092 mock oxidized	V024 kc167 cell	S17 3rd inster #1	S32 s2+48 #2	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM246084 D. melanogaster adult male heads 454	OSS6 Drosophila OSS cell small RNA libraries, rep2	V010 MLDmD20c5	GSM180334 larvae: 1st instar and 3rd instars	S9 0-1h #3 (7)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S18 3rd inster #2	V021 ML-DmD21 cell	SRR029028 untreated (mock)	S24 male body #2	SRR023402 total RNA extracted from NLS-P19 cells	V011 Sg4	SRR001340 IR beta-eliminated	V097 CS ovary	GSM343287 Drosophila Toll 10b mutant embryos	GSM280085 WT testes (18-24nt)	OSS8 Drosophila OSS cell small RNA libraries, rep4	S10 2-6h #1 (8)	GSM280087 S2cell (AGO2IP)	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V098 dcr-2[L811fsX] ovary	GSM467729 WT	SRR001342 WT_males beta-eliminated	V026 1182-4H cell	V075 ML-DmBG1-C1	SRR029030 dcr-2 knockdown	S23 female body #2	GSM280088 S2cell (AGO1IP)	V067 S2-NP	GSM239052 S2 cells, non beta-eliminated	GSM379057 Krimp Mutant	SRR023197 RNA Library from S2 control cells	GSM379063 Vasa Heterozygote	S34 KC+48 #1	S33 KC-48 #2	V025 S2R+ cell	GSM239041 fly heads, non beta-eliminated	V064 ago2[414], ovary, AGO1IP	S35 KC+48 #2	S14 0-1hr #1 (A)	V020 S2R+ cell	S11 2-6h #2 (9)	S4 female body	V088 r2d2[1] ovary total RNA	SRR023400 total RNA extracted from P19 cells	GSM467730 r2d2	GSM239051 S2 cells, beta-eliminated	GSM379065 Zuc Heterozygote	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM467731 loq	GSM239050 fly heads, beta-eliminated	S30 s2-48 #2	GSM379060 SpnE Heterozygote	GSM379066 Zuc Mutant	GSM379067 SpnE Mutant	GSM280086 WT ovaries (AGO2IP)	GSM379050 Armi Heterozygote	SRR010954 Aub trans-heterozygotes, oxidized	V066 r2d2[1], ovary, AGO1IP	SRR014273 Ovary_rep1_Har_P	V089 ago2[414] ovary total RNA	GSM379064 Vasa Mutant	GSM379053 Aub Mutant	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	S3 male body	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	S20 2-4day pupae#2	GSM379059	SRR032093 ago1 knockdown	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR010953 Aub heterozygotes, oxidized	GSM379058	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014282 Ovary_rep1 wK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR032094 ago2 knockdown	S16 KC -48 #1	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	GSM379056 Krimp Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR029033 lacZ knockdown	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	GSM280084 loqs-/- ovaries (18-29nt)	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR029029 dcr-1 knockdown	SRR010959 Ago3 IP in heterozygotes	SRR014280 Ovary_rep1 w1118_P	GSM180331 early embryo (2-6)	SRR029032 r2d2 knockdown	SRR014277 Ovary_rep1 NA_P	S8 S2-48,+48, KC-48, +48 mix	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	S15 S2 -48 #1	GSM379051 Armi Mutant	GSM379062 Squ Mutant	GSM379061 Squ Heterozygote	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM424739 S2 parental	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM180329 adult bodies (female bodies, male bodies)	SRR010951 Ago3 heterozygotes, oxidized
....................ACGGACACTTATATAATTTT.............................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AATTTTGATTGTTGCTCAGAAAGCC..........................................................................	25	1	6	4	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATTTTGATTGTTGCTCAGAAA.............................................................................	21	1	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATTTTGATTGTTGCTCAGAAAG............................................................................	22	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATTTTGATTGTTGCTCAGAAAGCC..........................................................................	24	1	21	4	1	0	1	0	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATTTTGATTGTTGCTCAGAAAGC...........................................................................	23	1	3	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTTTGATTGTTGCTCAGAAAGCC..........................................................................	23	1	65638	28518	5486	3685	2686	3895	1783	1551	2037	1476	547	936	1223	797	724	996	634	173	517	537	537	176	431	488	308	430	312	323	423	449	345	296	346	295	72	181	181	134	129	134	173	112	48	57	64	53	63	58	53	31	44	42	46	42	38	38	33	16	27	31	29	24	0	16	13	11	17	8	14	6	12	13	14	4	10	14	8	2	6	1	11	7	9	0	2	7	7	5	2	5	4	7	6	6	3	2	4	3	2	3	2	3	5	5	4	3	2	5	3	3	2	2	1	1	1	1	1	2	1	1	2	2	2	1	0	0	0	0	1	1	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTTTGATTGTTGCTCAGAAAGCCC.........................................................................	24	1	212	84	20	22	11	12	1	5	4	3	0	2	13	1	1	2	2	0	3	0	0	1	1	1	0	0	1	2	0	1	6	0	3	0	1	1	1	0	0	1	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTTTGATTGTTGCTCAGAA..............................................................................	19	1	346	3	5	39	66	5	39	36	0	15	1	20	2	7	26	0	4	1	12	1	1	0	11	0	0	1	11	12	4	0	3	1	0	1	8	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTTTGATTGTTGCTCAGAAAGCCCT........................................................................	25	1	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTTTGATTGTTGCTCAGAAAG............................................................................	21	1	6213	980	247	574	891	196	409	427	42	297	16	283	78	293	239	11	207	16	118	24	24	7	95	19	35	42	81	88	32	1	40	55	4	25	65	6	7	9	32	17	0	20	2	15	14	8	7	4	2	11	4	8	2	2	2	0	6	8	0	0	0	1	0	3	2	5	0	1	2	1	1	1	0	1	2	1	2	0	1	3	2	2	2	8	5	1	1	1	2	2	0	0	0	1	0	1	1	0	3	1	1	0	0	0	0	1	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................CTCATTGTTTACCAGTTG........................................................	18	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................CTCATTGTTTACCAGTTGG.......................................................	19	1	93	3	4	0	9	3	7	8	1	4	5	1	0	1	0	2	0	0	0	2	2	0	0	1	29	0	2	2	0	0	0	0	0	1	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GCTTTCGAGCAATAATTGAAAC..................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GCTTTCGAGCAATAATTGAAACC.................................	23	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTTTCGAGCAATAATTGA.....................................	18	1	91	4	0	0	0	0	41	4	0	0	7	1	0	1	13	0	3	5	3	0	0	4	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTTTCGAGCAATAATTGAAACC.................................	22	1	4956	101	79	18	69	52	360	264	1	194	1803	44	4	13	113	32	8	641	6	1	1	513	23	0	223	2	1	4	3	58	34	9	33	9	44	4	3	1	0	6	0	4	58	24	0	1	2	3	6	4	0	2	0	3	0	0	0	9	0	0	0	0	19	0	5	1	1	4	0	3	0	0	0	4	0	0	0	7	4	0	0	1	0	0	0	0	1	1	1	0	1	0	0	0	4	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTTTCGAGCAATAATTGAAAC..................................	21	1	300	4	5	0	1	4	51	13	0	7	83	5	0	1	10	2	1	37	1	0	0	27	0	0	11	0	0	0	1	0	2	0	2	2	1	0	0	0	0	0	0	0	2	1	0	0	0	1	1	0	0	1	3	3	0	0	0	2	0	0	0	0	8	0	2	0	0	2	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTTTCGAGCAATAATTGAAACCA................................	23	1	2	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTTTCGAGCAATAATTGAAA...................................	20	1	52	0	0	0	3	1	22	1	0	0	7	2	0	1	1	1	0	6	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTTTCGAGCAATAATTGAA....................................	19	1	42	2	3	0	0	0	18	5	0	0	3	1	0	0	2	0	1	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTTTCGAGCAATAATTGAAACCAG...............................	24	1	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTTCGAGCAATAATTGAA....................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTTCGAGCAATAATTGAAAC..................................	20	1	5	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTTCGAGCAATAATTGAAACC.................................	21	1	72	1	3	0	0	0	6	3	0	3	26	0	0	0	0	0	0	13	1	0	0	12	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TTCGAGCAATAATTGAAACC.................................	20	1	5	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TCGAGCAATAATTGAAAC..................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CGAGCAATAATTGAAACC.................................	18	1	5	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V082 embryo 14-24hr	V001 IR-	SRR031696_2152	SRR031703 Total small RNAs from r2d2 homozygous flies	V002 IR+	SRR029633 total small RNAs from hen1 homozygous flies	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR001345 ago2 non-beta-eliminated	SRR031692 Total small RNAs from Oregon R	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V009 CMEL1	SRR031699 Total small RNAs from dcr-2 homozygous flies	S29 male head #1	V081 embryo 2-6hr	V090 CS  male total RNA	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR001349 heterozygous dcr-2_untreated	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR031693_4	SRR001338 IR non-beta-eliminated	SRR001344 dcr-2 beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001343 dcr-2 non-beta-eliminated	SRR001664 homozygous dcr-2_untreated	SRR001347 ago2 untreated	S5 imaginal disc	S12 6-10h #1 (10)	S21 disk #2	V083 male, one day	S13 6-10h #2 (11)	S28 0-2d pupae	S22 female head #1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S7 12-24hr embryo	V019 GM2 cell	V084 female, one day	GSM180335 imaginal discs	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S27 0-1d Pupae (w)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S2 female head	V008 S2-DRSC	SRR001348 ago2 oxidized	S26 1st instar #2	S19 2-4day pupae #1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM180328 adult heads (female heads, male heads)	GSM180333 late embryo (12-24)	V076 ML-DmBG3-C2	V028 CMEW1 Cl.8+ cell	V033 CMEW1 Cl.8+ cell	V018 Kc167 cell	SRR001337 WT_females beta-eliminated	S25 1st instar #1	S1 male head	SRR001346 ago2 beta-eliminated	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM180332 mid embryo (6-10)	V063 CS,ovary,AGO1IP	SRR032092 mock oxidized	V024 kc167 cell	S17 3rd inster #1	S32 s2+48 #2	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM246084 D. melanogaster adult male heads 454	OSS6 Drosophila OSS cell small RNA libraries, rep2	V010 MLDmD20c5	GSM180334 larvae: 1st instar and 3rd instars	S9 0-1h #3 (7)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S18 3rd inster #2	V021 ML-DmD21 cell	SRR029028 untreated (mock)	S24 male body #2	SRR023402 total RNA extracted from NLS-P19 cells	V011 Sg4	SRR001340 IR beta-eliminated	V097 CS ovary	GSM343287 Drosophila Toll 10b mutant embryos	GSM280085 WT testes (18-24nt)	OSS8 Drosophila OSS cell small RNA libraries, rep4	S10 2-6h #1 (8)	GSM280087 S2cell (AGO2IP)	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V098 dcr-2[L811fsX] ovary	GSM467729 WT	SRR001342 WT_males beta-eliminated	V026 1182-4H cell	V075 ML-DmBG1-C1	SRR029030 dcr-2 knockdown	S23 female body #2	GSM280088 S2cell (AGO1IP)	V067 S2-NP	GSM239052 S2 cells, non beta-eliminated	GSM379057 Krimp Mutant	SRR023197 RNA Library from S2 control cells	GSM379063 Vasa Heterozygote	S34 KC+48 #1	S33 KC-48 #2	V025 S2R+ cell	GSM239041 fly heads, non beta-eliminated	V064 ago2[414], ovary, AGO1IP	S35 KC+48 #2	S14 0-1hr #1 (A)	V020 S2R+ cell	S11 2-6h #2 (9)	S4 female body	V088 r2d2[1] ovary total RNA	SRR023400 total RNA extracted from P19 cells	GSM467730 r2d2	GSM239051 S2 cells, beta-eliminated	GSM379065 Zuc Heterozygote	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM467731 loq	GSM239050 fly heads, beta-eliminated	S30 s2-48 #2	GSM379060 SpnE Heterozygote	GSM379066 Zuc Mutant	GSM379067 SpnE Mutant	GSM280086 WT ovaries (AGO2IP)	GSM379050 Armi Heterozygote	SRR010954 Aub trans-heterozygotes, oxidized	V066 r2d2[1], ovary, AGO1IP	SRR014273 Ovary_rep1_Har_P	V089 ago2[414] ovary total RNA	GSM379064 Vasa Mutant	GSM379053 Aub Mutant	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	S3 male body	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	S20 2-4day pupae#2	GSM379059	SRR032093 ago1 knockdown	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR010953 Aub heterozygotes, oxidized	GSM379058	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014282 Ovary_rep1 wK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR032094 ago2 knockdown	S16 KC -48 #1	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	GSM379056 Krimp Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR029033 lacZ knockdown	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	GSM280084 loqs-/- ovaries (18-29nt)	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR029029 dcr-1 knockdown	SRR010959 Ago3 IP in heterozygotes	SRR014280 Ovary_rep1 w1118_P	GSM180331 early embryo (2-6)	SRR029032 r2d2 knockdown	SRR014277 Ovary_rep1 NA_P	S8 S2-48,+48, KC-48, +48 mix	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	S15 S2 -48 #1	GSM379051 Armi Mutant	GSM379062 Squ Mutant	GSM379061 Squ Heterozygote	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM424739 S2 parental	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM180329 adult bodies (female bodies, male bodies)	SRR010951 Ago3 heterozygotes, oxidized