Page generated on Fri Oct 15 12:01:35 2010

dme-mir-316



dme-mir-316

View dme-mir-316 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-316	138	154992	3		150088		4837		70	16	150088	4837

TCGGTATGTGAAAAGTGGATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTCAGCGATTTGCAGGTGATCCAG
........................((((((((((.(((.(((((((((((.(((.(((.((((..........)))).)))..)))))))))))))).))).)))).)))))).........................-29.00
..((..((..((..((.((....(((((((((((.(((.(((((((((((.(((.(((.((((..........)))).)))..)))))))))))))).))).)))).))))))).)).))..))..))......))..-39.40
Sense strand

	Size	Blast	Total	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V082 embryo 14-24hr	GSM379059	GSM379057 Krimp Mutant	V098 dcr-2[L811fsX] ovary	GSM280085 WT testes (18-24nt)	V088 r2d2[1] ovary total RNA	SRR031696_2152	GSM379065 Zuc Heterozygote	V065 dcr-2[L811fsX], ovary, AGO1IP	V097 CS ovary	V001 IR-	V002 IR+	GSM379064 Vasa Mutant	V063 CS,ovary,AGO1IP	V066 r2d2[1], ovary, AGO1IP	S24 male body #2	SRR029633 total small RNAs from hen1 homozygous flies	V083 male, one day	GSM379051 Armi Mutant	V090 CS  male total RNA	V064 ago2[414], ovary, AGO1IP	V084 female, one day	GSM379063 Vasa Heterozygote	GSM379056 Krimp Heterozygote	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014275 Ovary_rep1 LK_P	V089 ago2[414] ovary total RNA	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014277 Ovary_rep1 NA_P	SRR031692 Total small RNAs from Oregon R	GSM379053 Aub Mutant	SRR014273 Ovary_rep1_Har_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379052 Aub Heterozygote	GSM379054 Flam Heterozygote	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001345 ago2 non-beta-eliminated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379066 Zuc Mutant	V081 embryo 2-6hr	S23 female body #2	GSM379061 Squ Heterozygote	SRR001347 ago2 untreated	SRR014282 Ovary_rep1 wK_P	GSM379060 SpnE Heterozygote	S29 male head #1	SRR001338 IR non-beta-eliminated	SRR001664 homozygous dcr-2_untreated	SRR014280 Ovary_rep1 w1118_P	GSM379050 Armi Heterozygote	SRR001349 heterozygous dcr-2_untreated	GSM379055 Flam Mutant	GSM467729 WT	GSM379062 Squ Mutant	S12 6-10h #1 (10)	S28 0-2d pupae	GSM280084 loqs-/- ovaries (18-29nt)	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S19 2-4day pupae #1	S7 12-24hr embryo	GSM379067 SpnE Mutant	GSM280082 WT ovaries (18-29nt)	GSM467730 r2d2	GSM379058	S13 6-10h #2 (11)	SRR001343 dcr-2 non-beta-eliminated	S9 0-1h #3 (7)	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR001344 dcr-2 beta-eliminated	S22 female head #1	S27 0-1d Pupae (w)	S4 female body	S2 female head	S3 male body	SRR010959 Ago3 IP in heterozygotes	S17 3rd inster #1	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM467731 loq	SRR001348 ago2 oxidized	GSM180333 late embryo (12-24)	S1 male head	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S18 3rd inster #2	S25 1st instar #1	SRR032092 mock oxidized	S35 KC+48 #2	S21 disk #2	SRR001337 WT_females beta-eliminated	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM180329 adult bodies (female bodies, male bodies)	S20 2-4day pupae#2	SRR010954 Aub trans-heterozygotes, oxidized	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S5 imaginal disc	SRR031693_4	S10 2-6h #1 (8)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR032094 ago2 knockdown	SRR010953 Aub heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S34 KC+48 #1	GSM180334 larvae: 1st instar and 3rd instars	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V011 Sg4	S26 1st instar #2	GSM180332 mid embryo (6-10)	S33 KC-48 #2	GSM180328 adult heads (female heads, male heads)	S32 s2+48 #2	GSM239041 fly heads, non beta-eliminated	SRR001346 ago2 beta-eliminated	V008 S2-DRSC	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S11 2-6h #2 (9)	SRR010956 Piwi IP in Ago3 heterozygotes	V020 S2R+ cell	S8 S2-48,+48, KC-48, +48 mix	GSM343287 Drosophila Toll 10b mutant embryos	GSM246084 D. melanogaster adult male heads 454	SRR001340 IR beta-eliminated	GSM180335 imaginal discs	SRR029029 dcr-1 knockdown	SRR029032 r2d2 knockdown	V009 CMEL1	GSM280087 S2cell (AGO2IP)	SRR010960 wt, oxidized	SRR001342 WT_males beta-eliminated	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	S30 s2-48 #2	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	S14 0-1hr #1 (A)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM180330 very early embryo (0-1)	V018 Kc167 cell	S16 KC -48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	V019 GM2 cell	SRR029031 loqs-ORF knockdown	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	V076 ML-DmBG3-C2	SRR023197 RNA Library from S2 control cells	SRR029033 lacZ knockdown	V010 MLDmD20c5	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM239050 fly heads, beta-eliminated	SRR032095 AGO1 IP dcr2 knockdown	V028 CMEW1 Cl.8+ cell	GSM280088 S2cell (AGO1IP)	V026 1182-4H cell	GSM180331 early embryo (2-6)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	V075 ML-DmBG1-C1	V025 S2R+ cell	V067 S2-NP	SRR023399 RNA bound by P19 protein	SRR029030 dcr-2 knockdown	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	V024 kc167 cell	V033 CMEW1 Cl.8+ cell	SRR010951 Ago3 heterozygotes, oxidized
......................................TTGTCTTTTTCCGCTTACTGG...............................................................................	21	1	5	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TTGTCTTTTTCCGCTTACTGGCG.............................................................................	23	1	6	2	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TTGTCTTTTTCCGCTTACTGGCGT............................................................................	24	1	4	1	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TTGTCTTTTTCCGCTTACTGGC..............................................................................	22	1	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TTGTCTTTTTCCGCTTACTG................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTCTTTTTCCGCTTACTGG...............................................................................	20	1	3263	305	7	117	84	32	232	3	275	50	11	33	4	6	43	28	15	50	268	13	17	2	9	5	7	9	116	15	1	179	4	6	104	19	13	5	30	23	167	84	20	6	4	0	26	7	37	2	9	48	113	66	4	10	71	1	111	3	0	9	7	6	13	1	2	2	73	10	0	28	9	6	7	5	4	6	8	7	0	6	11	11	9	26	13	0	1	10	0	0	0	7	0	2	0	1	1	3	0	6	0	1	0	6	0	1	2	1	0	0	1	0	1	0	0	0	1	1	1	0	2	0	0	1	0	0	0	1	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTCTTTTTCCGCTTACTGGCGT............................................................................	23	1	33793	7923	7594	380	605	2280	98	776	407	566	557	1077	1073	785	290	353	366	126	114	935	225	693	241	905	296	145	110	244	511	61	254	211	83	121	212	265	93	121	63	73	33	224	149	259	47	190	69	133	105	26	36	52	107	59	44	73	75	70	29	28	87	81	20	44	58	41	56	40	36	6	26	32	9	14	5	19	7	6	11	5	3	3	11	22	4	6	3	2	5	4	0	3	5	0	22	3	2	0	9	2	4	1	0	1	1	0	1	3	0	4	0	3	2	0	2	0	0	0	1	0	0	0	4	0	4	3	3	1	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTCTTTTTCCGCTTACTGGCGTTTCAATTCCA..................................................................	33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTCTTTTTCCGCTTACT.................................................................................	18	1	68	3	0	1	0	0	1	0	5	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	8	0	0	2	0	1	0	0	0	0	0	0	0	16	0	0	0	2	0	3	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTCTTTTTCCGCTTACTGGCGTT...........................................................................	24	1	2087	514	435	26	51	143	0	49	23	56	26	74	38	35	31	13	15	3	6	56	10	31	6	45	11	15	3	14	29	0	18	14	4	6	25	36	5	4	5	3	5	20	10	19	1	8	2	14	9	0	1	1	9	4	2	3	15	4	2	0	24	10	1	1	6	1	8	3	1	2	0	5	0	1	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	8	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTCTTTTTCCGCTTACTGGCGTTTCAAT......................................................................	29	1	11	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................GAAAGGGAAAAAGGCGTA.......................................	18	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V082 embryo 14-24hr	GSM379059	GSM379057 Krimp Mutant	V098 dcr-2[L811fsX] ovary	GSM280085 WT testes (18-24nt)	V088 r2d2[1] ovary total RNA	SRR031696_2152	GSM379065 Zuc Heterozygote	V065 dcr-2[L811fsX], ovary, AGO1IP	V097 CS ovary	V001 IR-	V002 IR+	GSM379064 Vasa Mutant	V063 CS,ovary,AGO1IP	V066 r2d2[1], ovary, AGO1IP	S24 male body #2	SRR029633 total small RNAs from hen1 homozygous flies	V083 male, one day	GSM379051 Armi Mutant	V090 CS  male total RNA	V064 ago2[414], ovary, AGO1IP	V084 female, one day	GSM379063 Vasa Heterozygote	GSM379056 Krimp Heterozygote	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014275 Ovary_rep1 LK_P	V089 ago2[414] ovary total RNA	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014277 Ovary_rep1 NA_P	SRR031692 Total small RNAs from Oregon R	GSM379053 Aub Mutant	SRR014273 Ovary_rep1_Har_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379052 Aub Heterozygote	GSM379054 Flam Heterozygote	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001345 ago2 non-beta-eliminated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379066 Zuc Mutant	V081 embryo 2-6hr	S23 female body #2	GSM379061 Squ Heterozygote	SRR001347 ago2 untreated	SRR014282 Ovary_rep1 wK_P	GSM379060 SpnE Heterozygote	S29 male head #1	SRR001338 IR non-beta-eliminated	SRR001664 homozygous dcr-2_untreated	SRR014280 Ovary_rep1 w1118_P	GSM379050 Armi Heterozygote	SRR001349 heterozygous dcr-2_untreated	GSM379055 Flam Mutant	GSM467729 WT	GSM379062 Squ Mutant	S12 6-10h #1 (10)	S28 0-2d pupae	GSM280084 loqs-/- ovaries (18-29nt)	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S19 2-4day pupae #1	S7 12-24hr embryo	GSM379067 SpnE Mutant	GSM280082 WT ovaries (18-29nt)	GSM467730 r2d2	GSM379058	S13 6-10h #2 (11)	SRR001343 dcr-2 non-beta-eliminated	S9 0-1h #3 (7)	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR001344 dcr-2 beta-eliminated	S22 female head #1	S27 0-1d Pupae (w)	S4 female body	S2 female head	S3 male body	SRR010959 Ago3 IP in heterozygotes	S17 3rd inster #1	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM467731 loq	SRR001348 ago2 oxidized	GSM180333 late embryo (12-24)	S1 male head	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S18 3rd inster #2	S25 1st instar #1	SRR032092 mock oxidized	S35 KC+48 #2	S21 disk #2	SRR001337 WT_females beta-eliminated	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM180329 adult bodies (female bodies, male bodies)	S20 2-4day pupae#2	SRR010954 Aub trans-heterozygotes, oxidized	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S5 imaginal disc	SRR031693_4	S10 2-6h #1 (8)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR032094 ago2 knockdown	SRR010953 Aub heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S34 KC+48 #1	GSM180334 larvae: 1st instar and 3rd instars	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V011 Sg4	S26 1st instar #2	GSM180332 mid embryo (6-10)	S33 KC-48 #2	GSM180328 adult heads (female heads, male heads)	S32 s2+48 #2	GSM239041 fly heads, non beta-eliminated	SRR001346 ago2 beta-eliminated	V008 S2-DRSC	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S11 2-6h #2 (9)	SRR010956 Piwi IP in Ago3 heterozygotes	V020 S2R+ cell	S8 S2-48,+48, KC-48, +48 mix	GSM343287 Drosophila Toll 10b mutant embryos	GSM246084 D. melanogaster adult male heads 454	SRR001340 IR beta-eliminated	GSM180335 imaginal discs	SRR029029 dcr-1 knockdown	SRR029032 r2d2 knockdown	V009 CMEL1	GSM280087 S2cell (AGO2IP)	SRR010960 wt, oxidized	SRR001342 WT_males beta-eliminated	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	S30 s2-48 #2	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	S14 0-1hr #1 (A)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM180330 very early embryo (0-1)	V018 Kc167 cell	S16 KC -48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	V019 GM2 cell	SRR029031 loqs-ORF knockdown	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	V076 ML-DmBG3-C2	SRR023197 RNA Library from S2 control cells	SRR029033 lacZ knockdown	V010 MLDmD20c5	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM239050 fly heads, beta-eliminated	SRR032095 AGO1 IP dcr2 knockdown	V028 CMEW1 Cl.8+ cell	GSM280088 S2cell (AGO1IP)	V026 1182-4H cell	GSM180331 early embryo (2-6)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	V075 ML-DmBG1-C1	V025 S2R+ cell	V067 S2-NP	SRR023399 RNA bound by P19 protein	SRR029030 dcr-2 knockdown	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	V024 kc167 cell	V033 CMEW1 Cl.8+ cell	SRR010951 Ago3 heterozygotes, oxidized
.........................................................................AACGACAGGAAAGGGAAAAAGG...........................................	22	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................CGACAGGAAAGGGAAAAAGGCGTA.......................................	24	1	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0