Page generated on Fri Oct 15 12:01:19 2010

dme-mir-33




dme-mir-33

View dme-mir-33 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-331481272767104781200372378968006312918120037268006


TTTTTGGCGACTGAGTGCCACCAGACTCTTCCTCTGGAGATGACACGAAGGTGCATTGTAGTCGCATTGTCTGTCCCAATTGCTTCAGGCAATACAACTTCAGTGCAAGCTCTGTGCATTTCACATACAACGCCGAATGTCTCTGGCA
....................................((((((.((((.((.(((((((.(((.(.((((((((...(....)...)))))))).).))).)))))))..)).))))))))))..........................-33.20
..(((((((...((((........))))......((((((((.((((.((.(((((((.(((.(.((((((((...(....)...)))))))).).))).)))))))..)).)))))))))).)).....))))))).((.....)).-46.60
Sense strand
                                                                                                                                                    SizeBlastTotalSRR031696_2152 V009 CMEL1SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies V024 kc167 cellV033 CMEW1 Cl.8+ cellOSS6 Drosophila OSS cell small RNA libraries, rep2 OSS8 Drosophila OSS cell small RNA libraries, rep4 V026 1182-4H cellV076 ML-DmBG3-C2OSS2 Drosophila OSS cell small RNA libraries, rep1 SRR029633 total small RNAs from hen1 homozygous flies V010 MLDmD20c5V067 S2-NPV098 dcr-2[L811fsX] ovaryV011 Sg4SRR031701 Total small RNAs from r2d2 heterozygous flies V028 CMEW1 Cl.8+ cellOSS7 Drosophila OSS cell small RNA libraries, rep3 SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies SRR031703 Total small RNAs from r2d2 homozygous flies V065 dcr-2[L811fsX], ovary, AGO1IPSRR031693_4 V097 CS ovaryV018 Kc167 cellV063 CS,ovary,AGO1IPV019 GM2 cellV025 S2R+ cellGSM280088 S2cell (AGO1IP) V008 S2-DRSCSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR031697 Total small RNAs from dcr-2 heterozygous flies V088 r2d2[1] ovary total RNA  SRR031692 Total small RNAs from Oregon R SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR001349 heterozygous dcr-2_untreated SRR031699 Total small RNAs from dcr-2 homozygous flies SRR029028 untreated (mock) GSM379064 Vasa Mutant SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies SRR032095 AGO1 IP dcr2 knockdown S32 s2+48 #2SRR014277 Ovary_rep1 NA_P V021 ML-DmD21 cellS33 KC-48 #2SRR032092 mock oxidized SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 SRR014275 Ovary_rep1 LK_P SRR001338 IR non-beta-eliminated SRR001664 homozygous dcr-2_untreated GSM467729 WT V020 S2R+ cellV090 CS  male total RNA  V075 ML-DmBG1-C1SRR001347 ago2 untreated SRR014282 Ovary_rep1 wK_P S30 s2-48 #2GSM379056 Krimp Heterozygote V066 r2d2[1], ovary, AGO1IPV064 ago2[414], ovary, AGO1IPV089 ago2[414] ovary total RNA  SRR014280 Ovary_rep1 w1118_P GSM379066 Zuc Mutant SRR029030 dcr-2 knockdown GSM424740 S2 pKF63 stably transfected SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM379060 SpnE Heterozygote GSM379052 Aub Heterozygote GSM379065 Zuc Heterozygote GSM467730 r2d2 S31 s2+48 #1V082 embryo 14-24hrV083 male, one daySRR014273 Ovary_rep1_Har_P SRR001345 ago2 non-beta-eliminated SRR032093 ago1 knockdown SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies GSM379057 Krimp Mutant SRR029031 loqs-ORF knockdown S29 male head #1GSM280083 dcr-2-/- ovaries (18-29nt) GSM379063 Vasa Heterozygote GSM280087 S2cell (AGO2IP) SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V081 embryo 2-6hrS16 KC -48 #1SRR023402 total RNA extracted from NLS-P19 cells GSM379058 V084 female, one daySRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated SRR010954 Aub trans-heterozygotes, oxidized SRR010953 Aub heterozygotes, oxidized GSM379054 Flam Heterozygote GSM424739 S2 parental GSM280082 WT ovaries (18-29nt) SRR001343 dcr-2 non-beta-eliminated GSM379061 Squ Heterozygote SRR029033 lacZ knockdown S15 S2 -48 #1GSM379050 Armi Heterozygote GSM379051 Armi Mutant SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR010960 wt, oxidized GSM379062 Squ Mutant SRR010959 Ago3 IP in heterozygotes SRR029032 r2d2 knockdown SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S35 KC+48 #2S22 female head #1SRR029029 dcr-1 knockdown V002 IR+SRR032096 AGO2 IP dcr2 knockdownV001 IR-GSM379053 Aub Mutant SRR032094 ago2 knockdown S34 KC+48 #1SRR001348 ago2 oxidized GSM379067 SpnE Mutant SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR001344 dcr-2 beta-eliminated S24 male body #2S28 0-2d pupaeSRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb GSM467731 loq GSM379055 Flam Mutant SRR010955 Aub IP in Ago3 heterozygotes SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023407 RNA bound by NLS-P19 protein S8 S2-48,+48, KC-48, +48 mixGSM379059 SRR023399 RNA bound by P19 protein SRR010956 Piwi IP in Ago3 heterozygotes SRR023400 total RNA extracted from P19 cells SRR010951 Ago3 heterozygotes, oxidized GSM343287 Drosophila Toll 10b mutant embryos S19 2-4day pupae #1S23 female body #2SRR010952 Ago3 trans-heterozygotes, oxidized S9 0-1h #3 (7)GSM239051 S2 cells, beta-eliminated S10 2-6h #1 (8)SRR001337 WT_females beta-eliminated S14 0-1hr #1 (A)S27 0-1d Pupae (w)GSM280084 loqs-/- ovaries (18-29nt) GSM239052 S2 cells, non beta-eliminated SRR023197 RNA Library from S2 control cells S2 female headS21 disk #2S17 3rd inster #1GSM280085 WT testes (18-24nt) S1 male headS13 6-10h #2 (11)S4 female bodyS3 male bodyS5 imaginal discGSM180328 adult heads (female heads, male heads) GSM180337 tissue culture cells (S2 only) S12 6-10h #1 (10)SRR001340 IR beta-eliminated SRR001346 ago2 beta-eliminated S11 2-6h #2 (9)S20 2-4day pupae#2GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 S18 3rd inster #2S25 1st instar #1GSM239050 fly heads, beta-eliminated S7 12-24hr embryoGSM424741 S2 pKF63 transiently transfected SRR001342 WT_males beta-eliminated GSM180329 adult bodies (female bodies, male bodies) GSM180331 early embryo (2-6) GSM180335 imaginal discs GSM180334 larvae: 1st instar and 3rd instars S26 1st instar #2GSM239041 fly heads, non beta-eliminated GSM180333 late embryo (12-24) GSM246084 D. melanogaster adult male heads 454 GSM180330 very early embryo (0-1) GSM280086 WT ovaries (AGO2IP) GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM180332 mid embryo (6-10) GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)
.TTTTGGCGACTGAGTGCCACCAGAC..........................................................................................................................2511000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTCTTCCTCTGGAGATGACACGAAG..................................................................................................2511000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CTTCCTCTGGAGATGACACGAAG..................................................................................................2316000210001000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTCCTCTGGAGATGACAC......................................................................................................1811000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTCCTCTGGAGATGACACGAAG..................................................................................................22121010000005000031000000010001000000000300000010002000000000000000000000001000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCCTCTGGAGATGACACGAAG..................................................................................................211980202201414002213030000034042002020110010001119003000501010000140000000022110010000000002001000000000030000000000000000000000000010000000000000000000000000000010000000000000000000000000000000
.............................TCCTCTGGAGATGACACGAA...................................................................................................2011000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CCTCTGGAGATGACACGAA...................................................................................................1913000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CCTCTGGAGATGACACGAAG..................................................................................................201264020133007370032335070000012100513001030200311001101050301001231039000310001000027201010210100024002000000000091000000020000100101000101000030020000000000000000000000000000000000000000000000000000000
...............................CTCTGGAGATGACACGAAG..................................................................................................19135010210018000211000000011001010000100000000000002000200006000000000000000101000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CTCTGGAGATGACACGAA...................................................................................................1812000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000
................................TCTGGAGATGACACGAAG..................................................................................................181440300000412100211010000011011000000000500003000000000200000000000000000002000000000000010000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTGCATTGTAGTCGCA..................................................................................1811000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTGCATTGTAGTCGCATTG...............................................................................2116000000000000000000000000000000000000000001000000000000000000000000000000000000004000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTGCATTGTAGTCGCATTGTCT............................................................................2411000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTGCATTGTAGTCGCATTGTC.............................................................................23114010000001001000000002001101000000000000000000001000000001000010000000200000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTGCATTGTAGTCGCATTGT..............................................................................22112000100001010001000000000000000000000000010011000100200000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTGCATTGTAGTCGCATT................................................................................1911000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTGCATTGTAGTCGCATTG...............................................................................2011000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTGCATTGTAGTCGCATTGTCT............................................................................2314100000000100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.................................................GGTGCATTGTAGTCGCATTGT..............................................................................21128040201101000102000000002001000002000200000020000002001000000000000000000000000000000010000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTGCATTGTAGTCGCATTGTC.............................................................................22164050433000024208120110302300121110000302000010000100011000000100000000000000001100000000010000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTGCATTGTAGTCGCATTGTCTG...........................................................................2411000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATTGTCTGTCCCAATTG..................................................................3212000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATTGTCTGTCCC.......................................................................27123000001101131000010000000010000100000000300000000105000000000000000000010000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATT................................................................................18187351281044123160131159497712925573435240298142437241178118436854414325372310226203715025928219300292216131040121822816040516052037153641581860065904651081632448722161314891030430252561932200282318460051191561011491002016167600420310332516203013204002300100000000010000000000000000000
..................................................GTGCATTGTAGTCGCATTGTCTGTCCCA......................................................................281280000100000100000000000000000000000000000000000000070000000000000000000180000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATTGTCTGTCCCAA.....................................................................2913000000100000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATTGTCT............................................................................22126739334910952287673331137101345139296812215264782548751009236779601302233271633301613672322436171083051456071124383787511659819526285128532453783073664019994812833511943496665524332275217272592730010131453979202429472935389100109152291710101032521216320653129223711746265618361661220913341228151314259512123312952050003093136301340120150010402201001000011011001000100000
..................................................GTGCATTGTAGTCGCATTGTCTGTCCCAATTGCT................................................................3412000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATTG...............................................................................191176687367111601235454393398281613354908605233222246257283286170197112167106630132414205133400247387441005490466479427352011349762153423127381097589572152852153861737192319500352683154364284031615314431292933401625153126342242855213018010167101715125529973011261416124514131023113218171212610212011173030119157131390171717513304201050010040010000000001000000000000
..................................................GTGCATTGTAGTCGCATTGTCTGT..........................................................................2416211630112173420242711142428337161917205954130856913426011111824700223325516560525032003210144004103100120110011440000000022120100600000123020012009000020200010000000001000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATTGTCTGTCCCAAT....................................................................3011000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATTGTCTGTCCCAATTGC.................................................................3315000000000000000000000000000000000000000000000000003000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATTGTCTGTCCCAATT...................................................................3111000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATTGTCTG...........................................................................2311774844719417523610933673292116832962079204954521233808362697512212771315187103212300563148513023024311587155371059928467111682285207674607913117737238585293526347875810170097238894427569202135122112513482220432267188611913130035025252862441422513291743667185914303121624230313116161313134142616020514010209032100001001310200001000000010001000000000
..................................................GTGCATTGTAGTCGCATTGTCTGTC.........................................................................2511030700101101104020110002000002001000000000024000000000012003000000000000000040000009000000000000000000000000000000700000000000100000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGCATTGTAGTCGCATTGT..............................................................................2012522871621164014048127085286728772025902768065561218342107516630629256484444452067836935352242243145762298253682770581532942281240718682837134926042747172913378807532521247712871355197941810351199197026733017125121641163186172514958808208619036636266690593146360763843619519644197956892522261203811099599583431337888993581353855231921923822316414270440261352393274191557582351473424433121972221881481771732591781921364381160142322414107162323199117381524766412596311221152438660653142726328323922211027233424612910123124425102020501100000
..................................................GTGCATTGTAGTCGCATTGTC.............................................................................2118743054099641324391972851325874238912290824015192892108811294196331656718493196971694016307163981904613139172311750315216125681397199371087986549210106969742109708268102627575670251737876747472944111421262855542476528306353594149244013233543094024411736504834354146594666412440533916391619973463797239534753168349912612184322328302815315413492559271616712127218822342053149214221726251420011961214521457127771821174316301426155390311601421142510241597126313927269618551199529999361932966429714658836883812632630377209610773698698436498658672612627242338746932334625729521322021618020113915814519957180908372661152753641423339222283026121614961213936400000
..................................................GTGCATTGTAGTCGCATTGTCTGTCC........................................................................2615003000220300200002000001002001000000000010000000000110020000000000000000110000000000000000000000100000000000000000000000000200001030000000000000000000000000000000000000000000000000000000000000
...................................................TGCATTGTAGTCGCATTGTCT............................................................................2119960021130011010000000000000110000100010003300000001000100000000080010000500102001100000010000010000000100000030002600008000000001000010000000000000100000000000000000000000000000000000000000000
...................................................TGCATTGTAGTCGCATTGTC.............................................................................201788322964156659414321574141223113300211817556322717662561245250021010003174001702801020030110256060510000401001003001031213010023000013001000200000000010000001000011000000001000000000000000000000000000000000000
...................................................TGCATTGTAGTCGCATTGTCTG...........................................................................2217702002410110011200250000010111100000004100230000000000010010000000000010000000010900000000000000000000100000000001600000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................TGCATTGTAGTCGCATTG...............................................................................1816501001100103000000000000020010000000000002900000000200001000000000000000000000100100000100000021000000000000000000017000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGCATTGTAGTCGCATTGTCTGTCC........................................................................2512000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGCATTGTAGTCGCATTGT..............................................................................191150910012002440100012110102000900403004194005301148001001000020000210000000010200000201010010000000000001300100017000002003000001000000000000000000000000000010000000000000000000000000000000000000
....................................................GCATTGTAGTCGCATTGT..............................................................................18180311200140140610100303011110011210005500060007001000000000000000000000022000001010000100000000000000000000007000000000000000000000010000000100000000000000000000000000000000000000000000000000
....................................................GCATTGTAGTCGCATTGTCTG...........................................................................2115000011100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................GCATTGTAGTCGCATTGTCTGTCCCA......................................................................2611000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GCATTGTAGTCGCATTGTCT............................................................................20112000010000020100000100000000000101000000000013000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GCATTGTAGTCGCATTGTC.............................................................................191259221413275113211123318231231101023110012151721263201382000020034010101500001013300071020300000301000100101000100135001021700000000001001100000200110000000000000000000000000000100000000000000000000
.....................................................CATTGTAGTCGCATTGTCT............................................................................1914000000001000000000000000000100000000000010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................CATTGTAGTCGCATTGTCTG...........................................................................20124000010002100020000000000000001000100000010200000000000000000000800000000000001010000100100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.....................................................CATTGTAGTCGCATTGTC.............................................................................181388142773883663220011711145311600108426140240170837000050001110000221011903121002023024008213001110100420030122100020090021801200100000200001100000000000000100001000100000000000000000000000000000000000
......................................................ATTGTAGTCGCATTGTCT............................................................................18124000010102300000002000000000000100001200010000002000000101000000000000001001000020000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................ATTGTAGTCGCATTGTCTG...........................................................................19133001040100110220002000000300100000000000000000000000000000000000000000000000000020000001010000000000000000000000000000000100000001100305000000000000000000000000000000000000000000000000000000
.......................................................TTGTAGTCGCATTGTCTG...........................................................................18124000020000000010010000000000001000000001010000000000001000000000000000000000000010000000000000000000010000000000000000000000000004400303000000000000000000000000000000000000000000000000000000
........................................................TGTAGTCGCATTGTCTGTCCCAATTG..................................................................2611000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................CTGTCCCAATTGCTTCAGG...........................................................1913000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TGTCCCAATTGCTTCAGG...........................................................18137800787701002310577316264810749553133122161071322801550843722384267152532660601202262154017212341901964444179538514416300810922208435102535196242692324202401479900904011845512282012031723057747193973716212040101117420100111804111132009196682671500270031044080000001100000000000
.......................................................................TGTCCCAATTGCTTCAGGC..........................................................1914000000000000000000000000000000000000000300000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TCCCAATTGCTTCAGGCAATACAACTTCAG.............................................3011000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GCTTCAGGCAATACAACTTCAGT............................................2312000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000000000
..................................................................................CTTCAGGCAATACAACTTCAGT............................................2212000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CTTCAGGCAATACAACTTC...............................................1911000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CTTCAGGCAATACAACTTCAG.............................................2111000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TTCAGGCAATACAACTTCAGTGCAA........................................2511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TTCAGGCAATACAACTTCAGTGCA.........................................2411000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TCAGGCAATACAACTTCAGTGCAAGCT.....................................2712000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TCAGGCAATACAACTTCAGTGCAAG.......................................2511000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AGGCAATACAACTTCAGTGCA.........................................2111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................AGGCAATACAACTTCAGTGCAAG.......................................2311000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AGGCAATACAACTTCAGTGCAAGC......................................2412010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GGCAATACAACTTCAGTGCAAGCT.....................................2416020000000001000000000000000000000000000001000000000001000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GGCAATACAACTTCAGTGCA.........................................2016000000100000000000100000000000000000000001000000000000000000000000000000000000002000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.......................................................................................GGCAATACAACTTCAGTGC..........................................191250000000010000000000000000100000000000000040000000001000010000000000000001000000000000001300000000000000000000010000000000000000000010000000000001000000000000000000000000000000000000000000000
.......................................................................................GGCAATACAACTTCAGTGCAAGC......................................2318422250060214214102052000123046050030203140001942296071010801001760000023000000010800003201230000090000000000000380000000014200000013000055000000100000001300010110411110001010220010010000010010000000000000
.......................................................................................GGCAATACAACTTCAGTGCAA........................................21144340000000000000000000000000000000001000008000000000001003000000000000005000000000000003000000000000030000000001000000600000000000010001000201000000000100000000000000000000000000000000000000
.......................................................................................GGCAATACAACTTCAGTGCAAG.......................................22139903100220001400111010120000113018303010000040000850121000000312003300000060000000031000032000000000000000000000080000000050500001100000400000030000001000000000000010000000100000000000000000100000000000
........................................................................................GCAATACAACTTCAGTGCA.........................................1918000001000000000000000000000000100000000000002000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GCAATACAACTTCAGTGCAA........................................2019911000915001310001001300000010010000000000000170016000100000004000000000000001000000000000001000000000000000000000001000000000000000000000000000000000000000100001000000000000000000000000000000000
........................................................................................GCAATACAACTTCAGTGCAAG.......................................2111484711594127033350213022300300002100110000290420000000012040011200000100013000000020000105020000000001030110000032000002010001010000010000001000000100000001000000000000000000000000000000000000
........................................................................................GCAATACAACTTCAGTGC..........................................1811000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GCAATACAACTTCAGTGCAAGCT.....................................23113010011100101001010000000000000000000000001000000000100000000000000000002000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GCAATACAACTTCAGTGCAAGC......................................22140636005413513380012303230000011200011001020000092112300000030000210030006010100026000100013000111400000000000001200000000111000002100000000000000000000200000000100001100000000000000110000000000000000000
.........................................................................................CAATACAACTTCAGTGCAAGCTC....................................23135010112100010000100100100100001010000000001301000008000000000000500000000000000000000000000000000000000000000000000000200000101000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAATACAACTTCAGTGCAAGC......................................211541825474203552971321245399109111184326664420888851914692454854510211211352365777185147539575093012720453294429291413726307647905414635412191420021031168224411301141812221910102602775919003214131251420602245003104112364002346031025411001062000000310000000100100000000
.........................................................................................CAATACAACTTCAGTGCAAG.......................................20121017225153616315133327101093414321311597525128332422191154952473221555322231931647441220792660611191601080113100841193910626022814147101101000106120000010040100270031000100011011150030411005100001500018000001002001000200000000000010000000
.........................................................................................CAATACAACTTCAGTGCAA........................................19124402032263741141201212100105050030304010011009029000112016008000000200000005100100000000100300000000000001000005010001100000001100000010000000000000100000010000100000000000000000000000000000000
.........................................................................................CAATACAACTTCAGTGCA.........................................18123301034670269801007021400060110006020000002090517000000510004000000000000006000040010000004300111100000010000000001000000110002000000010100001000000000000000000010000000000000000000000000000000
.........................................................................................CAATACAACTTCAGTGCAAGCTCT...................................2415000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAATACAACTTCAGTGCAAGCT.....................................221528041252274326110233821504504877149044817793747352834355132806346259386322183298301254430680165709475527169906253113176249621017499524451933115214208168233130341141059470352202089611724964172110137801591548093761271654590251550269138179118271054381078193109033606002930361591532119428136888113607019523338634853492941269420980813345606632662214050386465225521321019122410891014151212430515444215725141112810030000000
..........................................................................................AATACAACTTCAGTGCAAGCT.....................................2115490155661718710121330241415231239013313344356173183011711600422340211030301001300311022121000020154370031200010110010002501020000000000000001000000000002000000010000000000001000000000000000000000000000000000000
..........................................................................................AATACAACTTCAGTGCAAGC......................................201670160430215160100213000201002030100000000510000000000000000000002000000000000000010000001000000000000000001000000000000000000000000000000100000000000000001000000000000000000000000000000000000
..........................................................................................AATACAACTTCAGTGCAAGCTC....................................22118000004500500000002000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AATACAACTTCAGTGCAAG.......................................19130111010010131000010200300011000400000000000000000000000000000000000000000000001000000000000000000000000000004000002010000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AATACAACTTCAGTGCAAGCTCT...................................2312000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................ATACAACTTCAGTGCAAGCTC....................................2111000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................ATACAACTTCAGTGCAAGC......................................1919000000000000100000000000000000000000000001020000000100000000000000000000000000010000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................ATACAACTTCAGTGCAAGCT.....................................20144360110100100000000002000001000100000010000000000001000010000000001344090000000000010000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TACAACTTCAGTGCAAGCTCTGT.................................2311000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TACAACTTCAGTGCAAGC......................................1814000000000010000000000000000000000000000000010000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TACAACTTCAGTGCAAGCT.....................................19114111000000000000001000200000010100000300000000000010000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................ACAACTTCAGTGCAAGCT.....................................18124101000100010000021000300011000001000001100000000000000100000000000000000000011000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................ACAACTTCAGTGCAAGCTC....................................1911000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................CAACTTCAGTGCAAGCTC....................................1811000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................AAGCTCTGTGCATTTCACATACAA..................2411000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................CTGTGCATTTCACATACAACGCCG.............2412000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                                    SizeBlastTotalSRR031696_2152 V009 CMEL1SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies V024 kc167 cellV033 CMEW1 Cl.8+ cellOSS6 Drosophila OSS cell small RNA libraries, rep2 OSS8 Drosophila OSS cell small RNA libraries, rep4 V026 1182-4H cellV076 ML-DmBG3-C2OSS2 Drosophila OSS cell small RNA libraries, rep1 SRR029633 total small RNAs from hen1 homozygous flies V010 MLDmD20c5V067 S2-NPV098 dcr-2[L811fsX] ovaryV011 Sg4SRR031701 Total small RNAs from r2d2 heterozygous flies V028 CMEW1 Cl.8+ cellOSS7 Drosophila OSS cell small RNA libraries, rep3 SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies SRR031703 Total small RNAs from r2d2 homozygous flies V065 dcr-2[L811fsX], ovary, AGO1IPSRR031693_4 V097 CS ovaryV018 Kc167 cellV063 CS,ovary,AGO1IPV019 GM2 cellV025 S2R+ cellGSM280088 S2cell (AGO1IP) V008 S2-DRSCSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR031697 Total small RNAs from dcr-2 heterozygous flies V088 r2d2[1] ovary total RNA  SRR031692 Total small RNAs from Oregon R SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR001349 heterozygous dcr-2_untreated SRR031699 Total small RNAs from dcr-2 homozygous flies SRR029028 untreated (mock) GSM379064 Vasa Mutant SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies SRR032095 AGO1 IP dcr2 knockdown S32 s2+48 #2SRR014277 Ovary_rep1 NA_P V021 ML-DmD21 cellS33 KC-48 #2SRR032092 mock oxidized SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 SRR014275 Ovary_rep1 LK_P SRR001338 IR non-beta-eliminated SRR001664 homozygous dcr-2_untreated GSM467729 WT V020 S2R+ cellV090 CS  male total RNA  V075 ML-DmBG1-C1SRR001347 ago2 untreated SRR014282 Ovary_rep1 wK_P S30 s2-48 #2GSM379056 Krimp Heterozygote V066 r2d2[1], ovary, AGO1IPV064 ago2[414], ovary, AGO1IPV089 ago2[414] ovary total RNA  SRR014280 Ovary_rep1 w1118_P GSM379066 Zuc Mutant SRR029030 dcr-2 knockdown GSM424740 S2 pKF63 stably transfected SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM379060 SpnE Heterozygote GSM379052 Aub Heterozygote GSM379065 Zuc Heterozygote GSM467730 r2d2 S31 s2+48 #1V082 embryo 14-24hrV083 male, one daySRR014273 Ovary_rep1_Har_P SRR001345 ago2 non-beta-eliminated SRR032093 ago1 knockdown SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies GSM379057 Krimp Mutant SRR029031 loqs-ORF knockdown S29 male head #1GSM280083 dcr-2-/- ovaries (18-29nt) GSM379063 Vasa Heterozygote GSM280087 S2cell (AGO2IP) SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V081 embryo 2-6hrS16 KC -48 #1SRR023402 total RNA extracted from NLS-P19 cells GSM379058 V084 female, one daySRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated SRR010954 Aub trans-heterozygotes, oxidized SRR010953 Aub heterozygotes, oxidized GSM379054 Flam Heterozygote GSM424739 S2 parental GSM280082 WT ovaries (18-29nt) SRR001343 dcr-2 non-beta-eliminated GSM379061 Squ Heterozygote SRR029033 lacZ knockdown S15 S2 -48 #1GSM379050 Armi Heterozygote GSM379051 Armi Mutant SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR010960 wt, oxidized GSM379062 Squ Mutant SRR010959 Ago3 IP in heterozygotes SRR029032 r2d2 knockdown SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb S35 KC+48 #2S22 female head #1SRR029029 dcr-1 knockdown V002 IR+SRR032096 AGO2 IP dcr2 knockdownV001 IR-GSM379053 Aub Mutant SRR032094 ago2 knockdown S34 KC+48 #1SRR001348 ago2 oxidized GSM379067 SpnE Mutant SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR001344 dcr-2 beta-eliminated S24 male body #2S28 0-2d pupaeSRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb GSM467731 loq GSM379055 Flam Mutant SRR010955 Aub IP in Ago3 heterozygotes SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023407 RNA bound by NLS-P19 protein S8 S2-48,+48, KC-48, +48 mixGSM379059 SRR023399 RNA bound by P19 protein SRR010956 Piwi IP in Ago3 heterozygotes SRR023400 total RNA extracted from P19 cells SRR010951 Ago3 heterozygotes, oxidized GSM343287 Drosophila Toll 10b mutant embryos S19 2-4day pupae #1S23 female body #2SRR010952 Ago3 trans-heterozygotes, oxidized S9 0-1h #3 (7)GSM239051 S2 cells, beta-eliminated S10 2-6h #1 (8)SRR001337 WT_females beta-eliminated S14 0-1hr #1 (A)S27 0-1d Pupae (w)GSM280084 loqs-/- ovaries (18-29nt) GSM239052 S2 cells, non beta-eliminated SRR023197 RNA Library from S2 control cells S2 female headS21 disk #2S17 3rd inster #1GSM280085 WT testes (18-24nt) S1 male headS13 6-10h #2 (11)S4 female bodyS3 male bodyS5 imaginal discGSM180328 adult heads (female heads, male heads) GSM180337 tissue culture cells (S2 only) S12 6-10h #1 (10)SRR001340 IR beta-eliminated SRR001346 ago2 beta-eliminated S11 2-6h #2 (9)S20 2-4day pupae#2GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 S18 3rd inster #2S25 1st instar #1GSM239050 fly heads, beta-eliminated S7 12-24hr embryoGSM424741 S2 pKF63 transiently transfected SRR001342 WT_males beta-eliminated GSM180329 adult bodies (female bodies, male bodies) GSM180331 early embryo (2-6) GSM180335 imaginal discs GSM180334 larvae: 1st instar and 3rd instars S26 1st instar #2GSM239041 fly heads, non beta-eliminated GSM180333 late embryo (12-24) GSM246084 D. melanogaster adult male heads 454 GSM180330 very early embryo (0-1) GSM280086 WT ovaries (AGO2IP) GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM180332 mid embryo (6-10) GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)
.......CGACTGAGTGCCACCAGACTCTT......................................................................................................................2311000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................CATTGTAGTCGCATTGTCTGT..........................................................................2111000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................CATTGTCTGTCCCAATTGCTTCA.............................................................2311000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TGTCTGTCCCAATTGCTTCAG............................................................2111000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TCTGTCCCAATTGCTTCAGGCA.........................................................2211000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAGGCAATACAACTTCAGTGC..........................................2111000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAGGCAATACAACTTCAGTGCA.........................................2211000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AGGCAATACAACTTCAGTGCA.........................................2111000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAATACAACTTCAGTGCAAGC......................................2112000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000