Page generated on Fri Oct 15 12:01:12 2010

dme-mir-34




dme-mir-34

View dme-mir-34 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-3414861863169759116502627624560462782305911650245604


TGAATTAATCCAAACAAGTATTCTTAATTGGCTATGCGCTTTGGCAGTGTGGTTAGCTGGTTGTGTAGCCAATTATTGCCGTTGACAATTCACAGCCACTATCTTCACTGCCGCCGCGACAAGCTAAAGCAACTTATAAAGGACATGG
..............................(((.(((((..((((((((.((.(((.((((((((..(.((((.......)))).)....))))))))))).)).))))))))..))).)))))........................-37.50
........(((....(((....)))..((((((.(((((..((((((((.((.(((.((((((((..(.((((.......)))).)....))))))))))).)).))))))))..))).)))))))).............))).....-44.80
Sense strand
                                                                                                                                                    SizeBlastTotalV090 CS  male total RNA  SRR031696_2152 S29 male head #1V098 dcr-2[L811fsX] ovaryV097 CS ovarySRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR001338 IR non-beta-eliminated SRR029633 total small RNAs from hen1 homozygous flies S22 female head #1V083 male, one dayS24 male body #2SRR031699 Total small RNAs from dcr-2 homozygous flies V009 CMEL1SRR031703 Total small RNAs from r2d2 homozygous flies SRR031701 Total small RNAs from r2d2 heterozygous flies V010 MLDmD20c5V076 ML-DmBG3-C2SRR031692 Total small RNAs from Oregon R V011 Sg4SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR001664 homozygous dcr-2_untreated V089 ago2[414] ovary total RNA  SRR001347 ago2 untreated SRR001345 ago2 non-beta-eliminated S2 female headSRR001343 dcr-2 non-beta-eliminated V065 dcr-2[L811fsX], ovary, AGO1IPV067 S2-NPV063 CS,ovary,AGO1IPV084 female, one dayV028 CMEW1 Cl.8+ cellV064 ago2[414], ovary, AGO1IPV021 ML-DmD21 cellS23 female body #2SRR001349 heterozygous dcr-2_untreated V019 GM2 cellV033 CMEW1 Cl.8+ cellS33 KC-48 #2V088 r2d2[1] ovary total RNA  V026 1182-4H cellS30 s2-48 #2S9 0-1h #3 (7)V066 r2d2[1], ovary, AGO1IPGSM379057 Krimp Mutant SRR029031 loqs-ORF knockdown GSM379065 Zuc Heterozygote V025 S2R+ cellSRR031704 2-O-methylated small RNAs from r2d2 homozygous flies SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated S1 male headSRR032095 AGO1 IP dcr2 knockdown GSM467730 r2d2 GSM467729 WT V008 S2-DRSCV020 S2R+ cellV075 ML-DmBG1-C1GSM379059 GSM239041 fly heads, non beta-eliminated SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 SRR014273 Ovary_rep1_Har_P S16 KC -48 #1S15 S2 -48 #1SRR029028 untreated (mock) SRR014275 Ovary_rep1 LK_P S3 male bodyGSM280085 WT testes (18-24nt) GSM239052 S2 cells, non beta-eliminated S19 2-4day pupae #1OSS2 Drosophila OSS cell small RNA libraries, rep1 GSM180328 adult heads (female heads, male heads) OSS6 Drosophila OSS cell small RNA libraries, rep2 S4 female bodySRR029032 r2d2 knockdown GSM379064 Vasa Mutant GSM280084 loqs-/- ovaries (18-29nt) SRR001344 dcr-2 beta-eliminated GSM379051 Armi Mutant SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR014280 Ovary_rep1 w1118_P OSS7 Drosophila OSS cell small RNA libraries, rep3 GSM379063 Vasa Heterozygote GSM379052 Aub Heterozygote V018 Kc167 cellSRR032093 ago1 knockdown SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM280088 S2cell (AGO1IP) S35 KC+48 #2SRR032094 ago2 knockdown SRR029030 dcr-2 knockdown OSS8 Drosophila OSS cell small RNA libraries, rep4 GSM379050 Armi Heterozygote GSM379053 Aub Mutant SRR014277 Ovary_rep1 NA_P GSM379056 Krimp Heterozygote S21 disk #2GSM379066 Zuc Mutant GSM379060 SpnE Heterozygote V024 kc167 cellS5 imaginal discGSM467731 loq SRR029033 lacZ knockdown S34 KC+48 #1S28 0-2d pupaeSRR001348 ago2 oxidized GSM379054 Flam Heterozygote SRR014282 Ovary_rep1 wK_P SRR029029 dcr-1 knockdown S32 s2+48 #2S8 S2-48,+48, KC-48, +48 mixGSM379062 Squ Mutant GSM280083 dcr-2-/- ovaries (18-29nt) V082 embryo 14-24hrGSM280082 WT ovaries (18-29nt) SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM379061 Squ Heterozygote GSM379058 SRR001337 WT_females beta-eliminated SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies S10 2-6h #1 (8)S27 0-1d Pupae (w)SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies GSM180329 adult bodies (female bodies, male bodies) SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies GSM424740 S2 pKF63 stably transfected V001 IR-GSM379067 SpnE Mutant SRR001340 IR beta-eliminated GSM280087 S2cell (AGO2IP) S17 3rd inster #1V002 IR+S31 s2+48 #1SRR001346 ago2 beta-eliminated SRR031693_4 SRR032096 AGO2 IP dcr2 knockdownGSM180337 tissue culture cells (S2 only) GSM239051 S2 cells, beta-eliminated GSM239050 fly heads, beta-eliminated GSM379055 Flam Mutant SRR032092 mock oxidized GSM180335 imaginal discs GSM246084 D. melanogaster adult male heads 454 S14 0-1hr #1 (A)V081 embryo 2-6hrGSM424739 S2 parental S25 1st instar #1S12 6-10h #1 (10)S7 12-24hr embryoS18 3rd inster #2S13 6-10h #2 (11)SRR010959 Ago3 IP in heterozygotes GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM180334 larvae: 1st instar and 3rd instars SRR001342 WT_males beta-eliminated S20 2-4day pupae#2S11 2-6h #2 (9)SRR010955 Aub IP in Ago3 heterozygotes GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb SRR010954 Aub trans-heterozygotes, oxidized SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR010956 Piwi IP in Ago3 heterozygotes S26 1st instar #2SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb SRR010953 Aub heterozygotes, oxidized GSM343287 Drosophila Toll 10b mutant embryos SRR023400 total RNA extracted from P19 cells GSM180333 late embryo (12-24) GSM424741 S2 pKF63 transiently transfected SRR023197 RNA Library from S2 control cells SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR023399 RNA bound by P19 protein SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb SRR010960 wt, oxidized SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023407 RNA bound by NLS-P19 protein GSM180330 very early embryo (0-1) GSM180332 mid embryo (6-10) GSM180331 early embryo (2-6) SRR023402 total RNA extracted from NLS-P19 cells SRR010951 Ago3 heterozygotes, oxidized GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR010952 Ago3 trans-heterozygotes, oxidized GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM280086 WT ovaries (AGO2IP) GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
..................TATTCTTAATTGGCTATGCGC.............................................................................................................2113000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ATTCTTAATTGGCTATGCGC.............................................................................................................2011000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CTATGCGCTTTGGCAGTG...................................................................................................1812000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000
.....................................GCTTTGGCAGTGTGGTTAGCTGGTTG.....................................................................................2611000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CTTTGGCAGTGTGGTTAGCTGGTTGT....................................................................................2611000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CTTTGGCAGTGTGGTTAGCTGGTTG.....................................................................................2511000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TTTGGCAGTGTGGTTAGCTGGTTGT....................................................................................2511000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TTTGGCAGTGTGGTTAGCTGGTTG.....................................................................................2411000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TTTGGCAGTGTGGTTAGCTGGTTGTG...................................................................................2611000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TTTGGCAGTGTGGTTAGCTGGTTGTGT..................................................................................2711000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TTTGGCAGTGTGGTTAGCTGG........................................................................................2112000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TTTGGCAGTGTGGTTAGCTGGTT......................................................................................2312000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TTGGCAGTGTGGTTAGCTGGT.......................................................................................21115730000002000000000000000000000000000002000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TTGGCAGTGTGGTTAGCTGGTTGT....................................................................................2419100000010000000000001200000000000000002000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TTGGCAGTGTGGTTAGCTGGTT......................................................................................221431710120000002001002002100100000000010016002000000000001000000000000000001000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
........................................TTGGCAGTGTGGTTAGCTGGTTGTG...................................................................................25110000000112000000000010000000100000010001000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
........................................TTGGCAGTGTGGTTAGCTGGTTG.....................................................................................23124310000110002010000010020010000000010002000100000000021010000000000000000000000000000000000000000000010000000000000000000000000000000000200000000000000000000000000000000000000000000000000000
........................................TTGGCAGTGTGGTTAGCTGGTTGTGT..................................................................................2611000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TTGGCAGTGTGGTTAGCTGG........................................................................................2013110000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGCAGTGTGGTTAGCTGGTTGTGTAGCCAATT..........................................................................3311000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGCAGTGTGGTTAGCTGGTTGTG...................................................................................2411013699157746512345565274736531583068415775189612327635626189731247015121136399600802526131116821666010678492411851410657615969530416592143591626816879806015344744781782463470363173927546873526168290510424431955744418105652269228022802673506436864107335967878789208943173752184816632231251812421186014101207191120141799169928291436164282627501567272115521721147426484275132812057014761175871166713916495911628176613469941442953127940375838813481233898349580111670423707511123943932241363215565330480191284543284185136855831086230234132232261811735514116905957967661071513235620156002610121403423051516044394104100000
.........................................TGGCAGTGTGGTTAGCTGGTTGTGTAGCCA.............................................................................30116000000000000000000000000000000000000000000000000000088000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGCAGTGTGGTTAGCTGGTTGTGTAG................................................................................271133110000010001001000000010000000000000000000000000000062500000000000000000000000000000000000000000000000150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGCAGTGTGGTTAGCTGGT.......................................................................................201448698635714245329111347431653013769190811384217924507174697825669162017827881853464228190838255784362746372464310459963087257327161347283223112092369932902130290716442480957203330452159177921161645659571622742274211965918215931253546753152513238881349100782910159701200654112347629266627765982359577379832246440123028753429819252319327695776331123003334543871911781732381288945747426558615716236555831017030133132138111143342282182721721332441346475418116682302097114821837217330461315322428926220151711910515529191045620829542439521411300002120010000
.........................................TGGCAGTGTGGTTAGCTGGTTGTGTAGCCAATTAT........................................................................351250000000000000000000000000000000000000000000000000000109000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGCAGTGTGGTTAGCTGG........................................................................................191123347149251146943226630336326067024470817081926133130181804155123873954221514323431430245659817629113821146455420384380915344854614125513961182310573243294572283429296406353119756416413021275891194645592786352161091791331421171291761576027846030108861262313779451684473155162154739911858100161011131087724283888145590975566151156213052327510482741291422622611134045501098287285572618510906116610140431703111111000420104420010198500050101200000160010000
.........................................TGGCAGTGTGGTTAGCTGGTTGTGTAGC...............................................................................28124000000010001000002010000000000000000000000000001110085000000000000000100000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGCAGTGTGGTTAGCTGGTTG.....................................................................................22112646471779389711390766102208680736569020804168152331928596184951713138460143851235629377171161127823863114697405166276964506810175581110569123871158411574134969543145315853570214690850570927671866261294381641864768311631056792246278627863453433540194251534552712639394320913534392728972197269131551788203715482586102718499601555192221751983768317122642228838250021632638106021093254101113071259486177620691360113489615731522124796311521056609113157513261059812455753986816498100480577580221529829134939234548916529041099349380226114841642801271473173190841335574736222959340565526316732524042671037314105021947022323001401100
.........................................TGGCAGTGTGGTTAGCTGGTTGTGTA.................................................................................26111611633977280214213473221125161914019140199391412121111122200510000744103691070020601010030200200000000000120000000000020001230000000011000000110010100100000000000000000000010000100000000000000000000000000000000000
.........................................TGGCAGTGTGGTTAGCTG.........................................................................................1813123341328204442714115541414310210010720275313642166154167718167381193513817773161133731452832992316021204365815151469101214315750774402850211726406471967421452501014501162615170031230090300302201018160012000003010100100000000700005000000100011000100000000
.........................................TGGCAGTGTGGTTAGCTGGTTGT....................................................................................2313482444391320546255552499215135617747814065169081026212386324775673320299663019120274967472578182143581657906447011181090395412094286475111353720448812953242297048711892406950773149897929173699631137298348341321350470341001426188495434247868036417731793808372896124109556377765869634622702931172564023795523312737083993041986423603322731511371871514512082434814859892865924401039615415646351516512124114911511177526739019371151126151094817428557168223024105153418763842711601062252953670221653514210480138030003000012000203000000000
.........................................TGGCAGTGTGGTTAGCTGGTTGTGT..................................................................................251356442672381628182081800543692102714561217952102020610718051427428762678642771032373482881432654552254892413094730119368183228602093972672033453520179779791886119692343498453107343544138416800468953994369013204836133439172339111606200161414156291417313517514391115232104044112118941110557326353197074225125913013190005102000220042330110002000001000000000100000000000
.........................................TGGCAGTGTGGTTAGCTGGTTGTGTAGCCAAT...........................................................................3212000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGCAGTGTGGTTAGCTGGTTGTGTAGCCAA............................................................................3118800000000000000000000000000000000000000000000000000006619000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGCAGTGTGGTTAGCTGGTT......................................................................................2112647450293571330792196535202347110080936701197909523471033300424625262559278305111257223282212201144240154063405840228259123166434094230253050015133133451465910784145741303010629174482597611100111901222914781958476661517191901393898091352850472433162801628012813661237984039561027253612820357706170750364934094553565455309399352903897195134621961420029454690453360322429374126991773321034161355541355319683791226525248982111203030733166151515811768164212308401401226016252007136313121532176114261339138220511098069399191791999101348010147491813452224459295544481234577724383241714822323328588117851251251222899727035596314052113270419453313883822971124214100822000011000
.........................................TGGCAGTGTGGTTAGCTGGTTGTGTAGCC..............................................................................29122020000000000021000020000010000000000000000000000000067000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGCAGTGTGGTTAGCTGGTTGTGTAGCCAATTA.........................................................................34110900000000000000000000000000000000000000000000000000007926000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GGCAGTGTGGTTAGCTGGTTGTGTAGCCAA............................................................................3011000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GGCAGTGTGGTTAGCTGGTTG.....................................................................................21150608814117314595115207343263071813447827633242002116313010146502541453441617131338311106349011689391125250546429311004230220020200022742501211342020303523000500219201001101121260030700111000111000200000000000000000000000000000000000000000000000000
..........................................GGCAGTGTGGTTAGCTGGTTGTGTA.................................................................................2515000000100000001000000000000000000000000000000000110010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GGCAGTGTGGTTAGCTGGTT......................................................................................20198551542338123214167143643104850512044023774719212645415299352143211559171263966151673723171113712612996714358080108373596241310321014213101120443148204300410003203112221131011373501100102107910100200030000333000000000000000000000000000000000002000000000000000000
..........................................GGCAGTGTGGTTAGCTGGTTGTGTAG................................................................................2611000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GGCAGTGTGGTTAGCTGG........................................................................................181433856110242548311201122554110121701450106301100102000100001003422047101210000000000000000011000000000010200101000000000010000000000010030010100000000063000000000000000000000000000000000000000000000000000000
..........................................GGCAGTGTGGTTAGCTGGTTGT....................................................................................22112311524051422194870191964412855171246829343326272317340221447716279021528788504126441000125400000000030000100001000200100110100190201000010001200110021100000000000080000000001000000010000000000000000000000000000000000
..........................................GGCAGTGTGGTTAGCTGGTTGTG...................................................................................2314032798461711071431474062247111301542221013402431217588693464502261792617284144250432158460313112727133237496205003010010320112143330203540000121000341070108255000132210160050202010001010000100000000000000100000000000000000000000000000000000
..........................................GGCAGTGTGGTTAGCTGGTTGTGT..................................................................................241243156194035155441102015038059031120310010410101001010002002089100000010100000000000000011000000200000001000010000000010000000100010200000000000000000000000000000000000000000000000000000000000000000
..........................................GGCAGTGTGGTTAGCTGGT.......................................................................................19111021821525431926649310103477424987480263812942305640921017320222032112068838435200003110010000000001130000001013000010100000003004000010000411110020100000000026000100000000000000000000000000000000000000000000000000
...........................................GCAGTGTGGTTAGCTGGTTGT....................................................................................2112226221353704841245303994410005006122402203410230109020001021310100023001011000060001000100200100000011002000000000000100000001001100000000000000000000001000000001000000000000000000000000000000000
...........................................GCAGTGTGGTTAGCTGGTTG.....................................................................................2015158538526347766191635161612616610420585108571173305303163200014001520004002231002000140004300152011016020010101102000038000000210000110020000000000000000100000001000000000000000000000000000000000000000
...........................................GCAGTGTGGTTAGCTGGTTGTGTAG................................................................................2511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GCAGTGTGGTTAGCTGGTT......................................................................................1911246132343856702210320712106132113129845661501035416744681196105712243311300022342140250361214513141020101120411010440241610132010200100021021010402321001050000200200103000100100000000000000000000000000000000000000000000000
...........................................GCAGTGTGGTTAGCTGGTTGTG...................................................................................221507646143023292822573111315516302310814371111144031100310807030000150535001101211001000121621003410022700011110200000201118001010001201611000001001000110010001100000000000000000000000000000000000000000000000000
...........................................GCAGTGTGGTTAGCTGGT.......................................................................................181213327102033962410122621409000110121012015032002030010161101900110004310110000000001010000020000000000000000006400007000100000010000000000000000000000000000000000000000000000000000000000000000000000
...........................................GCAGTGTGGTTAGCTGGTTGTGT..................................................................................23126030001013120011023130000000020000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CAGTGTGGTTAGCTGGTTGT....................................................................................20181569422322132251001100100000212001310000000000010000001000100000800000000000010000000110002000000000000000000000000000000000001000100000000000100000000000000000000000000000000000000000000000
............................................CAGTGTGGTTAGCTGGTT......................................................................................18144214571713431102567625119141631021066041311211012300001012020000033000001001101220700000150000400200020360000100010005200059000100000025020000000000000000000010000000000000000000000000000000000000000000000
............................................CAGTGTGGTTAGCTGGTTG.....................................................................................19121410201743291826291324521500004021191022010140000005200002300111000000120100000160000100000310204000120000000001000000000000000000000000000010000000000000000000000000000000000010000000000000000000
............................................CAGTGTGGTTAGCTGGTTGTGT..................................................................................22114200300000000031001000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000
............................................CAGTGTGGTTAGCTGGTTGTG...................................................................................2111523721111132134241123140000003360603201401000100000001200001010010700101100090200000000300100030101000007100000000100011000020100100000000000000000000000000000000000000010000000044000500000000
.............................................AGTGTGGTTAGCTGGTTGTGT..................................................................................21113100002100010010000000000000000000001000000100000000010000000000000000000000000000000000000000000010012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AGTGTGGTTAGCTGGTTGT....................................................................................191682022114102630000012000000002030051001010003200000000000000000200012001000010000000000210000000110000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000
.............................................AGTGTGGTTAGCTGGTTGTGTAGCCA.............................................................................2611000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AGTGTGGTTAGCTGGTTGTG...................................................................................20123671022221622741721211270300002270650102300201020110012000900000100210101100201014010110000011012022000010100001000005000000000000000001002100001000000000000000000000000000000010000000011000000000000
.............................................AGTGTGGTTAGCTGGTTGTGTA.................................................................................2212100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AGTGTGGTTAGCTGGTTG.....................................................................................1813052929011571162921524002911102001133144122000202000123000110600001000101230003103050000100011120000000602000000000002000202111000000000000000000000000000000000000000000000020000000000000000000000000
..............................................GTGTGGTTAGCTGGTTGT....................................................................................18110132324801151600000101100001002102020400000105300001001000101000000001003000100000000001010300000001000000020000000000200001000000000000000000000000001001000010000000000000000000000000000000000
..............................................GTGTGGTTAGCTGGTTGTGTAGCC..............................................................................2411000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GTGTGGTTAGCTGGTTGTGT..................................................................................20111100000011120000010000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GTGTGGTTAGCTGGTTGTGTAGC...............................................................................2311000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GTGTGGTTAGCTGGTTGTGTA.................................................................................2112000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GTGTGGTTAGCTGGTTGTG...................................................................................19123463123022078152610420550421202041671506201400014313010002200011100001024100000180002000000020200000100000004001000000202100000200000000000000000100000010000000000000000000000000000000000000000000
...............................................TGTGGTTAGCTGGTTGTGTAGCCA.............................................................................2411000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TGTGGTTAGCTGGTTGTG...................................................................................1811099140119154146011044150100101261040101101000010010000100000000000500000000000000000100300003000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TGTGGTTAGCTGGTTGTGT..................................................................................1919120100010100000001000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TGTGGTTAGCTGGTTGTGTA.................................................................................2011000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TGTGGTTAGCTGGTTGTGTAG................................................................................2114000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000200000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GTGGTTAGCTGGTTGTGT..................................................................................1818110100000000000010000000000010000000000000000002000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GTGGTTAGCTGGTTGTGTAGC...............................................................................2112000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AGCTGGTTGTGTAGCCAATTATTG......................................................................2411000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTGTAGCCAATTATTGCCGTTGACA.............................................................2511000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TGTAGCCAATTATTGCCGTTGACA.............................................................2411000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GTAGCCAATTATTGCCGTTGACAATTC.........................................................2711000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
................................................................GTAGCCAATTATTGCCGTT.................................................................1911000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
................................................................GTAGCCAATTATTGCCGTTGACAA............................................................2411000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GTAGCCAATTATTGCCGTTGA...............................................................2111000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TAGCCAATTATTGCCGTTGAC..............................................................21111185724234141475171101422723275690264172211963685103072221311111003643062208643262130121810140411101700001031100060011500040000030007010300100000040000200020000110000000000000000000000100500004000000000100000020000000
.................................................................TAGCCAATTATTGCCGTTG................................................................19161160001440504020021001000001000000010000100000002001100000000000400000000000000000000000000000000000000007100000000000030000100000000030000000000000000000000000000002000000000200000000000000
.................................................................TAGCCAATTATTGCCGTTGACA.............................................................2214769211897153752843229378444722165152232678254174101459578643193635153714112459124133226161750182810206163030723513143371211310872191054176192195415131152523423351932312210231505463318104130010011400100100010105170070001100000100000000010700004000000000300000020010000
.................................................................TAGCCAATTATTGCCGTTGACAATTCAC.......................................................2812700000000000001000000000100000000000000000000000000001312000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TAGCCAATTATTGCCGTTGACAA............................................................2311212291247421183912879227164135323741572712848413284311352018156215731020055311319201102003112010011021106501100161200265008002010114401237000500000010160430000000002060000000100000010000000000000000000000000000000000000000
.................................................................TAGCCAATTATTGCCGTTGACAATTC.........................................................26128634943922124182924237125284812623921023461222711437431181811503411861582833222281115913114034684411119149214453044005035575504052411103626303040332210285815303525106330112120174031700100100030000200200000010300000000000000000001000000000000000000
.................................................................TAGCCAATTATTGCCGTTGACAATTCA........................................................2714231763034441112154379176313430438425433992279362569548527251456813142311311811252742510177960445128815038221625234352020320271821282042428017034040300211325230529014142000320502320621030107000061110000101301000112000110000000000000000000000000000000000
.................................................................TAGCCAATTATTGCCGTTGACAAT...........................................................241493119274016213947778128912023731367419717422130167511385514561492466741076133640421370125623374437102825017517333311343445225422111137921060006694350134367804612177271750634411210038741401961170437210341295513100410004340001002310000030000100000000001000010000000000000000000
.................................................................TAGCCAATTATTGCCGTTGACAATTCACAG.....................................................3012000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TAGCCAATTATTGCCGTT.................................................................181681430000000100010000000000000000000000000000000012000012000000000000000001000000000000000000000000000000008000000000000020010000000000010000000000000000000000000000003000000000000000000000000
.................................................................TAGCCAATTATTGCCGTTGA...............................................................2013763651093112220121911417251803816404121610004020000011500800012330051000000000000000000000000004160003001000120110005000000000000020000000000010022002000000000000000000000200000000000000000000000000000
.................................................................TAGCCAATTATTGCCGTTGACAATT..........................................................2516030159103941412863856644222225882139227622526922516721555742623927938801827554331478442536331640301411610822929141257258261227581054304668277214311719690361420120516005421116131616582132136107315164013780225362600920000230100101110000000200020000000000000000000000000000000000
..................................................................AGCCAATTATTGCCGTTGACAAT...........................................................2317802200002800021149004050002011000001000000000000000000000000000000000000001000010000010000000000000010000000000000000000010000000010000000000000000000000000000000000000000000000000000000000000
..................................................................AGCCAATTATTGCCGTTGACAATTCA........................................................261560000000900050216007040000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000
..................................................................AGCCAATTATTGCCGTTGACAATTC.........................................................25133080000010011050015020001010000000000000000100003000010000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
..................................................................AGCCAATTATTGCCGTTGAC..............................................................20110020000010001022011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................AGCCAATTATTGCCGTTGACAATT..........................................................24172018010011410050660011120011000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000
..................................................................AGCCAATTATTGCCGTTGACAA............................................................22113000000120003004002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................AGCCAATTATTGCCGTTGACA.............................................................211520200002140000048002011000010000000000000000000004000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000100001000000000000000000000000
..................................................................AGCCAATTATTGCCGTTGACAATTCACAGC....................................................3011000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................AGCCAATTATTGCCGTTGA...............................................................1913010000000000001000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GCCAATTATTGCCGTTGACAATT..........................................................23126177000015010001001000001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GCCAATTATTGCCGTTGA...............................................................1813000000001000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GCCAATTATTGCCGTTGACAATTCA........................................................25110000000002001011002000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
...................................................................GCCAATTATTGCCGTTGACAAT...........................................................2214001000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GCCAATTATTGCCGTTGACAATTC.........................................................2419004000003001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GCCAATTATTGCCGTTGAC..............................................................1915000000100010000001000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GCCAATTATTGCCGTTGACA.............................................................2016000000010010000001001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................CCAATTATTGCCGTTGACAATTC.........................................................2311000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CCAATTATTGCCGTTGACAATT..........................................................2213000000010000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CCAATTATTGCCGTTGACA.............................................................1912000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CCAATTATTGCCGTTGAC..............................................................1816000000000000001001010000000000000000000000000000000000010000000000001000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
....................................................................CCAATTATTGCCGTTGACAATTCA........................................................2412000000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAATTATTGCCGTTGACAAT...........................................................2016010000000000000010000000000000020000000000000000000100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAATTATTGCCGTTGACA.............................................................18111010000020100010000000000000000000100000000000000000100000000000000000000000000000000000000100100000000001000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................CAATTATTGCCGTTGACAA............................................................1912000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAATTATTGCCGTTGACAATT..........................................................211250012101000011020010000000000000020000000100000000001100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAATTATTGCCGTTGACAATTC.........................................................2216010000010011010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAATTATTGCCGTTGACAATTCA........................................................2314000000000000000000010000000000000010000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AATTATTGCCGTTGACAATTCA........................................................22114000000020000012005030000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AATTATTGCCGTTGACAA............................................................1814040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AATTATTGCCGTTGACAATT..........................................................2016000101000100000000000000000010000000000000000000000100000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AATTATTGCCGTTGACAAT...........................................................1915000000110000000001000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AATTATTGCCGTTGACAATTC.........................................................2118000001011000000001000000000010000000000000000001000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................ATTATTGCCGTTGACAATTC.........................................................2012000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................ATTATTGCCGTTGACAAT...........................................................1811000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................ATTATTGCCGTTGACAATT..........................................................1913000000000000000000010000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................ATTATTGCCGTTGACAATTCA........................................................2113000000000001000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTATTGCCGTTGACAATTCA........................................................20129200000100701012001105020100001000000001000000000000000000000000000000010000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
........................................................................TTATTGCCGTTGACAATT..........................................................1812000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TATTGCCGTTGACAATTCA........................................................19122100000002330100001121010000002000020000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TATTGCCGTTGACAATTC.........................................................1814000000000002000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATTGCCGTTGACAATTCACAGCCACTATCTTCACT.......................................3511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATTGCCGTTGACAATTCA........................................................18129000001010720040000040000000021000100001000000000000001000000000000000000000000000000000000000000000000000000000021010000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TTGCCGTTGACAATTCACAGCCACTATC.............................................2811000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TGCCGTTGACAATTCACAGCCA..................................................2211000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................CGTTGACAATTCACAGCCACTATCTTCACTGCCGC..................................3511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTGACAATTCACAGCCACTATC.............................................2211000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TGACAATTCACAGCCACTATCTTCACTGC.....................................2911000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TGACAATTCACAGCCACTATCTTCACTGCCGCCGC...............................3511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GACAATTCACAGCCACTATCTTCACTGCCGCCGCG..............................3511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GACAATTCACAGCCACTATCTTCACTGCCG...................................3012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAATTCACAGCCACTATCTTCAC........................................2311000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAATTCACAGCCACTATCTTCACT.......................................2411000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AATTCACAGCCACTATCTTCACTGC.....................................2511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AATTCACAGCCACTATCTTCACTGCCGCC.................................2912000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AATTCACAGCCACTATCTTCACTGCCGC..................................2811000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATTCACAGCCACTATCTTCACTGCCGC..................................2713000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATTCACAGCCACTATCTTCACTGCCGCCGC...............................3012000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATTCACAGCCACTATCTTCA.........................................2011000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATTCACAGCCACTATCTTCACT.......................................2217020000020030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATTCACAGCCACTATCTTCACTGCCGCCG................................2911000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATTCACAGCCACTATCTTCACTGCCGCC.................................2817000000000001030000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATTCACAGCCACTATCTTCACTGCCG...................................2611000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTCACAGCCACTATCTTCACTGCC....................................2412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTCACAGCCACTATCTTCACT.......................................2111000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTCACAGCCACTATCTTCACTGCCGC..................................2613000000000001010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTCACAGCCACTATCTTCACTGCCGCC.................................2712000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCACAGCCACTATCTTCACTGCCGCCGCGACAA..........................3311000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCACAGCCACTATCTTCACTGCCGCCG................................2711000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCACAGCCACTATCTTCACTG......................................2111000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCACAGCCACTATCTTCACTGCC....................................2311000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCACAGCCACTATCTTCACTGCCGCC.................................2612000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCACAGCCACTATCTTCACTGCCGC..................................2511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCACAGCCACTATCTTCACTGC.....................................2212000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................CACAGCCACTATCTTCACTGCCGCC.................................2513000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................ACAGCCACTATCTTCACTGCCGCCGCGACAAGCTA......................3511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................ACAGCCACTATCTTCACTGC.....................................2011000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................ACAGCCACTATCTTCACTGCCGCCG................................2511000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................ACAGCCACTATCTTCACTGCCGCC.................................241182001010000071801000200000004000000002001200103000010005051000000000001022031000000000000000000000001000100010000000000000002101000000000000101001000000000000000000000000000000000000000000000000
...........................................................................................ACAGCCACTATCTTCACTGCCGC..................................23115003000012010000000000000100000000000000000010000001000000010001000000100000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000
...........................................................................................ACAGCCACTATCTTCACTGCC....................................2111000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................ACAGCCACTATCTTCACTG......................................1914000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCC....................................2018010271500021541471332414040010201020001191043011310000026003713414041000002700916931021230000200130005001035000020001370543000120000000070660400020000010000000000010000000000000000002000010000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCCGCGACAAG.........................3116000000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCCGCGACA...........................29112000000000000000000000000000000000000000000000000000038000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCCGCG..............................2615500000000000000000000000000000000000000000000000000002427000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCCGCGACAAGCT.......................3312900000000000000000000000000000000000000000000000000000131158000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTG......................................1819906600001304100100101000000000000040002003000000111012212000100010000000100000000000000400000000000000050004000000000000030210000000000020000000000000000000000000100001000000000011000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCCGCGA.............................2713800000000000000000000000000000000000000000000000000002015000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCG...................................211149211301525191739465371422282310331181911079741012851961314147228415453423311311947499101082301242250426105125122140000050211905131416122011303521654320195500000002120640200000103020205001010000000010000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCCG................................24111680514000151060051012000000010000000100100001000000000004205970000200000040000110000000000000001001000000001850100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGC.....................................1919202261700251060351166621111100030000051011801500001012001001366391972032411101130061226001450000301000140000341001020111414705000111000000230030600010110030002000000000100000000000200201000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCCGC...............................25157100000000000000000000000000000000000000000000000000002862440000000000000000000000000000000000000000000000410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGC..................................221282641162373317775512372825474025084431944759530519262127142129314018142311258238239340158402191104882061639423054911717110542551986927793935757572061298292480304135131292814188655102321128121719090611483954154471950191931642104268585126275238130728234363360262211850140100573130133611438451313521214918231836211924211173423411890605108011660040262251040100000200045030040022000200000000
............................................................................................CAGCCACTATCTTCACTGCCGCCGCGAC............................2815600000000000000000000000000000000000000000000000000002031000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCCGCGACAAGCTA......................341384000000000000000000000000000000000000000000000000000028698000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCCGCGACAAGCTAA.....................3513870000000000000000000000000000000000000000000000000000229156000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCCGCGACAA..........................3013000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCCACTATCTTCACTGCCGCC.................................2312086335072473958876648387176717184158391537358701964269944492197130320202025576517938491008731678345652916931075124720832760428111645111162942629773181266317121858874145734012921392562562285152420162215101364837691266279131814173536721272636877801359349012243434444341191493171182061982562989425077297250514541161266095621262318481441243588503563022954922191422451252263067475543116870737479280595762103705460162183587441221153147361816124281034518744671159524443571600006500432503040261055010117410000
............................................................................................CAGCCACTATCTTCACTGCCGCCGCGACAAGC........................32112000000000000000000000000000000000000000000000000000054000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGCCACTATCTTCACTGCCGC..................................211355066202521031374131008911310120141000703110421001821112860010121131002169010300934000010104000600167400000031020000110000000000011000000000000100200000000000000000000000001000000000000000000000000000
.............................................................................................AGCCACTATCTTCACTGCCGCCG................................231230000000000000000000000000000000000000000000000000000119000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGCCACTATCTTCACTGCC....................................1918000000000021000101000000000000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
.............................................................................................AGCCACTATCTTCACTGCCG...................................20126020000001000100000000000000020101000000033000002000000000000000000000000000000000000001050000000002020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGCCACTATCTTCACTGCCGCC.................................22120005620166115202363242324029120571323383841828211081216204373194122738231288110125335076172052324101102215442523037427383171278053001301122456270100540222300132021030000000110000330100000001000100000000000000000000000000000000000000
.............................................................................................AGCCACTATCTTCACTGCCGCCGCG..............................2511000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGCCACTATCTTCACTGCCGCCGC...............................2419000000000000000000000000000000000000000000000000000053000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGCCACTATCTTCACTGCCGCCGCGACAAGCTAA.....................3412000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGCCACTATCTTCACTGC.....................................1815000000000000100000000000000000000000000000000000000021001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GCCACTATCTTCACTGCC....................................1817000000000031000000000000000000000100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................................GCCACTATCTTCACTGCCG...................................1917000000000000000000000000000000000000000020000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GCCACTATCTTCACTGCCGCCGCG..............................2411000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GCCACTATCTTCACTGCCGCCGCGACAAGC........................3011000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GCCACTATCTTCACTGCCGCCG................................2212000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GCCACTATCTTCACTGCCGCC.................................2113120426610001130141141310310010200410002720016001000000000020001100100833005011102000000000000003001000010000100000001101000000100110000000010000000007210000000000000000000000000000000000000000000000
..............................................................................................GCCACTATCTTCACTGCCGC..................................2014601100000000300101020000000001100011100000110000000000011000000001000000000000000000001000000100000000010000000000000000000000000000000000100000500000000000000000000000000000000000000000000000
...............................................................................................CCACTATCTTCACTGCCGCC.................................20118902233001120028100042341020003090236011110010020010000100002000005060020110601000001000011100103300003000100000000000001000000020000000000000000000000000000000000000000000000000000011000000000000
...............................................................................................CCACTATCTTCACTGCCGC..................................19128080000020010110000110010100020001000001000000010000000011000001000000001000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................CCACTATCTTCACTGCCG...................................1812020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CACTATCTTCACTGCCGC..................................18135060004010012000011001000000010000010000000000000000000000000000000000100000000001000010090000000020000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CACTATCTTCACTGCCGCCG................................2011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CACTATCTTCACTGCCGCC.................................19117406350112260005061021071033104100011111000120200000001000030000000001200103000000202000701000100100100000020110000200000020000000000000000000100000000000500000000000000000000000000000000000000
.................................................................................................ACTATCTTCACTGCCGCC.................................181870361002065016011012132001001010011010001000100010001000000000000000200001000000000000001000000010000000000000100000100000000000010000000000000100000000000000000000000000000000000000000000000
...................................................................................................................GCGACAAGCTAAAGCAACTTATAAAGGACA...3011000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................GCGACAAGCTAAAGCAACTTATAAAGGA.....2814000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                                    SizeBlastTotalV090 CS  male total RNA  SRR031696_2152 S29 male head #1V098 dcr-2[L811fsX] ovaryV097 CS ovarySRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR001338 IR non-beta-eliminated SRR029633 total small RNAs from hen1 homozygous flies S22 female head #1V083 male, one dayS24 male body #2SRR031699 Total small RNAs from dcr-2 homozygous flies V009 CMEL1SRR031703 Total small RNAs from r2d2 homozygous flies SRR031701 Total small RNAs from r2d2 heterozygous flies V010 MLDmD20c5V076 ML-DmBG3-C2SRR031692 Total small RNAs from Oregon R V011 Sg4SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR001664 homozygous dcr-2_untreated V089 ago2[414] ovary total RNA  SRR001347 ago2 untreated SRR001345 ago2 non-beta-eliminated S2 female headSRR001343 dcr-2 non-beta-eliminated V065 dcr-2[L811fsX], ovary, AGO1IPV067 S2-NPV063 CS,ovary,AGO1IPV084 female, one dayV028 CMEW1 Cl.8+ cellV064 ago2[414], ovary, AGO1IPV021 ML-DmD21 cellS23 female body #2SRR001349 heterozygous dcr-2_untreated V019 GM2 cellV033 CMEW1 Cl.8+ cellS33 KC-48 #2V088 r2d2[1] ovary total RNA  V026 1182-4H cellS30 s2-48 #2S9 0-1h #3 (7)V066 r2d2[1], ovary, AGO1IPGSM379057 Krimp Mutant SRR029031 loqs-ORF knockdown GSM379065 Zuc Heterozygote V025 S2R+ cellSRR031704 2-O-methylated small RNAs from r2d2 homozygous flies SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated S1 male headSRR032095 AGO1 IP dcr2 knockdown GSM467730 r2d2 GSM467729 WT V008 S2-DRSCV020 S2R+ cellV075 ML-DmBG1-C1GSM379059 GSM239041 fly heads, non beta-eliminated SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 SRR014273 Ovary_rep1_Har_P S16 KC -48 #1S15 S2 -48 #1SRR029028 untreated (mock) SRR014275 Ovary_rep1 LK_P S3 male bodyGSM280085 WT testes (18-24nt) GSM239052 S2 cells, non beta-eliminated S19 2-4day pupae #1OSS2 Drosophila OSS cell small RNA libraries, rep1 GSM180328 adult heads (female heads, male heads) OSS6 Drosophila OSS cell small RNA libraries, rep2 S4 female bodySRR029032 r2d2 knockdown GSM379064 Vasa Mutant GSM280084 loqs-/- ovaries (18-29nt) SRR001344 dcr-2 beta-eliminated GSM379051 Armi Mutant SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR014280 Ovary_rep1 w1118_P OSS7 Drosophila OSS cell small RNA libraries, rep3 GSM379063 Vasa Heterozygote GSM379052 Aub Heterozygote V018 Kc167 cellSRR032093 ago1 knockdown SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM280088 S2cell (AGO1IP) S35 KC+48 #2SRR032094 ago2 knockdown SRR029030 dcr-2 knockdown OSS8 Drosophila OSS cell small RNA libraries, rep4 GSM379050 Armi Heterozygote GSM379053 Aub Mutant SRR014277 Ovary_rep1 NA_P GSM379056 Krimp Heterozygote S21 disk #2GSM379066 Zuc Mutant GSM379060 SpnE Heterozygote V024 kc167 cellS5 imaginal discGSM467731 loq SRR029033 lacZ knockdown S34 KC+48 #1S28 0-2d pupaeSRR001348 ago2 oxidized GSM379054 Flam Heterozygote SRR014282 Ovary_rep1 wK_P SRR029029 dcr-1 knockdown S32 s2+48 #2S8 S2-48,+48, KC-48, +48 mixGSM379062 Squ Mutant GSM280083 dcr-2-/- ovaries (18-29nt) V082 embryo 14-24hrGSM280082 WT ovaries (18-29nt) SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM379061 Squ Heterozygote GSM379058 SRR001337 WT_females beta-eliminated SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies S10 2-6h #1 (8)S27 0-1d Pupae (w)SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies GSM180329 adult bodies (female bodies, male bodies) SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies GSM424740 S2 pKF63 stably transfected V001 IR-GSM379067 SpnE Mutant SRR001340 IR beta-eliminated GSM280087 S2cell (AGO2IP) S17 3rd inster #1V002 IR+S31 s2+48 #1SRR001346 ago2 beta-eliminated SRR031693_4 SRR032096 AGO2 IP dcr2 knockdownGSM180337 tissue culture cells (S2 only) GSM239051 S2 cells, beta-eliminated GSM239050 fly heads, beta-eliminated GSM379055 Flam Mutant SRR032092 mock oxidized GSM180335 imaginal discs GSM246084 D. melanogaster adult male heads 454 S14 0-1hr #1 (A)V081 embryo 2-6hrGSM424739 S2 parental S25 1st instar #1S12 6-10h #1 (10)S7 12-24hr embryoS18 3rd inster #2S13 6-10h #2 (11)SRR010959 Ago3 IP in heterozygotes GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM180334 larvae: 1st instar and 3rd instars SRR001342 WT_males beta-eliminated S20 2-4day pupae#2S11 2-6h #2 (9)SRR010955 Aub IP in Ago3 heterozygotes GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb SRR010954 Aub trans-heterozygotes, oxidized SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR010956 Piwi IP in Ago3 heterozygotes S26 1st instar #2SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb SRR010953 Aub heterozygotes, oxidized GSM343287 Drosophila Toll 10b mutant embryos SRR023400 total RNA extracted from P19 cells GSM180333 late embryo (12-24) GSM424741 S2 pKF63 transiently transfected SRR023197 RNA Library from S2 control cells SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR023399 RNA bound by P19 protein SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb SRR010960 wt, oxidized SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023407 RNA bound by NLS-P19 protein GSM180330 very early embryo (0-1) GSM180332 mid embryo (6-10) GSM180331 early embryo (2-6) SRR023402 total RNA extracted from NLS-P19 cells SRR010951 Ago3 heterozygotes, oxidized GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR010952 Ago3 trans-heterozygotes, oxidized GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM280086 WT ovaries (AGO2IP) GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
......AATCCAAACAAGTATTCTTAA.........................................................................................................................2111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........CCAAACAAGTATTCTTAATTG......................................................................................................................2112000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TTGGCAGTGTGGTTAGCTGGTTGTGTAGC...............................................................................2911000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TGTGGTTAGCTGGTTGTGTAGCCA.............................................................................2411000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GCCAATTATTGCCGTTGACAATTCACA......................................................2711000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..................................................................................TGACAATTCACAGCCACTAT..............................................2011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGCCGCCGCGACAAGCTAAAG...................2111000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CCGCGACAAGCTAAAGCAACT..............2111000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000