Page generated on Fri Oct 15 12:01:19 2010

dme-mir-5



dme-mir-5

View dme-mir-5 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-5	118	1215904	1	3688	1144924	9	67268	11	5	15	1144924	67268

ATCCCCAAATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTGTTTCCTAACATATCACAGTGATTTTCCTTTATAACGCATGTTTAAAGTCCACAACTCATCAA
............................(((((((.(((((((((((((((.............))))))))))))))))))))))................................-22.02
...............(((((((.((.(((((((((.(((((((((((((((.............)))))))))))))))))))))).)).)).)))......))))............-28.22
Sense strand

	Size	Blast	Total	V081 embryo 2-6hr	V082 embryo 14-24hr	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S10 2-6h #1 (8)	V001 IR-	S13 6-10h #2 (11)	S12 6-10h #1 (10)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V002 IR+	GSM343287 Drosophila Toll 10b mutant embryos	S11 2-6h #2 (9)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S14 0-1hr #1 (A)	GSM180331 early embryo (2-6)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S9 0-1h #3 (7)	GSM180332 mid embryo (6-10)	S34 KC+48 #1	S33 KC-48 #2	S7 12-24hr embryo	GSM180333 late embryo (12-24)	GSM180330 very early embryo (0-1)	SRR031696_2152	S29 male head #1	SRR014273 Ovary_rep1_Har_P	V097 CS ovary	SRR029633 total small RNAs from hen1 homozygous flies	S25 1st instar #1	V098 dcr-2[L811fsX] ovary	S28 0-2d pupae	V083 male, one day	V084 female, one day	S22 female head #1	V063 CS,ovary,AGO1IP	S26 1st instar #2	GSM379059	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014277 Ovary_rep1 NA_P	GSM379057 Krimp Mutant	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014280 Ovary_rep1 w1118_P	SRR031692 Total small RNAs from Oregon R	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V089 ago2[414] ovary total RNA	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S27 0-1d Pupae (w)	GSM379065 Zuc Heterozygote	SRR001345 ago2 non-beta-eliminated	S32 s2+48 #2	S2 female head	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V076 ML-DmBG3-C2	V066 r2d2[1], ovary, AGO1IP	V090 CS  male total RNA	S30 s2-48 #2	GSM379067 SpnE Mutant	SRR032095 AGO1 IP dcr2 knockdown	GSM379051 Armi Mutant	V075 ML-DmBG1-C1	GSM379061 Squ Heterozygote	SRR031699 Total small RNAs from dcr-2 homozygous flies	V088 r2d2[1] ovary total RNA	SRR032092 mock oxidized	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR029028 untreated (mock)	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031701 Total small RNAs from r2d2 heterozygous flies	S19 2-4day pupae #1	GSM424740 S2 pKF63 stably transfected	S35 KC+48 #2	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379056 Krimp Heterozygote	S18 3rd inster #2	V067 S2-NP	SRR023197 RNA Library from S2 control cells	SRR032094 ago2 knockdown	GSM180328 adult heads (female heads, male heads)	SRR014275 Ovary_rep1 LK_P	GSM379060 SpnE Heterozygote	SRR001338 IR non-beta-eliminated	V033 CMEW1 Cl.8+ cell	GSM379063 Vasa Heterozygote	S17 3rd inster #1	GSM280084 loqs-/- ovaries (18-29nt)	SRR001344 dcr-2 beta-eliminated	GSM379053 Aub Mutant	SRR029031 loqs-ORF knockdown	SRR001343 dcr-2 non-beta-eliminated	S15 S2 -48 #1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR031693_4	SRR001349 heterozygous dcr-2_untreated	GSM379064 Vasa Mutant	S21 disk #2	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM379066 Zuc Mutant	GSM280087 S2cell (AGO2IP)	V064 ago2[414], ovary, AGO1IP	S8 S2-48,+48, KC-48, +48 mix	V024 kc167 cell	S16 KC -48 #1	GSM379054 Flam Heterozygote	V009 CMEL1	OSS8 Drosophila OSS cell small RNA libraries, rep4	S31 s2+48 #1	GSM379050 Armi Heterozygote	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM467729 WT	GSM180334 larvae: 1st instar and 3rd instars	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR029030 dcr-2 knockdown	SRR001347 ago2 untreated	V018 Kc167 cell	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V011 Sg4	SRR001664 homozygous dcr-2_untreated	V019 GM2 cell	V010 MLDmD20c5	GSM280088 S2cell (AGO1IP)	GSM379062 Squ Mutant	SRR014282 Ovary_rep1 wK_P	OSS7 Drosophila OSS cell small RNA libraries, rep3	V025 S2R+ cell	V008 S2-DRSC	GSM379052 Aub Heterozygote	GSM379055 Flam Mutant	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V028 CMEW1 Cl.8+ cell	S5 imaginal disc	V021 ML-DmD21 cell	SRR032093 ago1 knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010954 Aub trans-heterozygotes, oxidized	V020 S2R+ cell	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM280082 WT ovaries (18-29nt)	S24 male body #2	SRR001337 WT_females beta-eliminated	S23 female body #2	SRR010956 Piwi IP in Ago3 heterozygotes	V026 1182-4H cell	S20 2-4day pupae#2	SRR023399 RNA bound by P19 protein	GSM180335 imaginal discs	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	GSM467731 loq	SRR032096 AGO2 IP dcr2 knockdown	GSM467730 r2d2	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379058	SRR001341 WT_males non-beta-eliminated	S4 female body	SRR010952 Ago3 trans-heterozygotes, oxidized	S1 male head	S3 male body	SRR029032 r2d2 knockdown	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	GSM180329 adult bodies (female bodies, male bodies)	SRR010951 Ago3 heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029033 lacZ knockdown	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR029029 dcr-1 knockdown	SRR010959 Ago3 IP in heterozygotes	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	GSM280085 WT testes (18-24nt)	SRR001346 ago2 beta-eliminated	SRR010953 Aub heterozygotes, oxidized
.TCCCCAAATTCATCGGGCCATTCGCT...........................................................................................	26	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCCCCAAATTCATCGGGCCATTCGCTA..........................................................................................	27	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CCCCAAATTCATCGGGCCATTCG.............................................................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CCCCAAATTCATCGGGCCATTCGCTA..........................................................................................	26	1	16	1	0	0	0	7	0	0	0	0	0	0	3	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CCCAAATTCATCGGGCCATTCGCTA..........................................................................................	25	1	19	1	0	0	1	3	0	0	0	0	0	0	5	0	8	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CCAAATTCATCGGGCCATTCGCTA..........................................................................................	24	1	6	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CCAAATTCATCGGGCCATTCG.............................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CCAAATTCATCGGGCCATTC..............................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CAAATTCATCGGGCCATTCGCTA..........................................................................................	23	1	10	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AAATTCATCGGGCCATTCGC............................................................................................	20	1	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AAATTCATCGGGCCATTCGCTA..........................................................................................	22	1	7	3	0	1	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................CAGTGATTTTCCTTTATAA............................	19	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CAGTGATTTTCCTTTATA.............................	18	1	27	8	0	4	5	2	0	1	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGTGATTTTCCTTTATAA............................	18	1	5	0	0	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................ACGCATGTTTAAAGTCCACAACTCATCA.	28	1	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................ACGCATGTTTAAAGTCCACAACTCAT...	26	1	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................ACGCATGTTTAAAGTCCACAACTCA....	25	1	4	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................ACGCATGTTTAAAGTCCACAACTCATCAA	29	1	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................ACGCATGTTTAAAGTCCACAACTCATC..	27	1	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V081 embryo 2-6hr	V082 embryo 14-24hr	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S10 2-6h #1 (8)	V001 IR-	S13 6-10h #2 (11)	S12 6-10h #1 (10)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V002 IR+	GSM343287 Drosophila Toll 10b mutant embryos	S11 2-6h #2 (9)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S14 0-1hr #1 (A)	GSM180331 early embryo (2-6)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	S9 0-1h #3 (7)	GSM180332 mid embryo (6-10)	S34 KC+48 #1	S33 KC-48 #2	S7 12-24hr embryo	GSM180333 late embryo (12-24)	GSM180330 very early embryo (0-1)	SRR031696_2152	S29 male head #1	SRR014273 Ovary_rep1_Har_P	V097 CS ovary	SRR029633 total small RNAs from hen1 homozygous flies	S25 1st instar #1	V098 dcr-2[L811fsX] ovary	S28 0-2d pupae	V083 male, one day	V084 female, one day	S22 female head #1	V063 CS,ovary,AGO1IP	S26 1st instar #2	GSM379059	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014277 Ovary_rep1 NA_P	GSM379057 Krimp Mutant	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014280 Ovary_rep1 w1118_P	SRR031692 Total small RNAs from Oregon R	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V089 ago2[414] ovary total RNA	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S27 0-1d Pupae (w)	GSM379065 Zuc Heterozygote	SRR001345 ago2 non-beta-eliminated	S32 s2+48 #2	S2 female head	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V076 ML-DmBG3-C2	V066 r2d2[1], ovary, AGO1IP	V090 CS  male total RNA	S30 s2-48 #2	GSM379067 SpnE Mutant	SRR032095 AGO1 IP dcr2 knockdown	GSM379051 Armi Mutant	V075 ML-DmBG1-C1	GSM379061 Squ Heterozygote	SRR031699 Total small RNAs from dcr-2 homozygous flies	V088 r2d2[1] ovary total RNA	SRR032092 mock oxidized	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR029028 untreated (mock)	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031701 Total small RNAs from r2d2 heterozygous flies	S19 2-4day pupae #1	GSM424740 S2 pKF63 stably transfected	S35 KC+48 #2	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379056 Krimp Heterozygote	S18 3rd inster #2	V067 S2-NP	SRR023197 RNA Library from S2 control cells	SRR032094 ago2 knockdown	GSM180328 adult heads (female heads, male heads)	SRR014275 Ovary_rep1 LK_P	GSM379060 SpnE Heterozygote	SRR001338 IR non-beta-eliminated	V033 CMEW1 Cl.8+ cell	GSM379063 Vasa Heterozygote	S17 3rd inster #1	GSM280084 loqs-/- ovaries (18-29nt)	SRR001344 dcr-2 beta-eliminated	GSM379053 Aub Mutant	SRR029031 loqs-ORF knockdown	SRR001343 dcr-2 non-beta-eliminated	S15 S2 -48 #1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR031693_4	SRR001349 heterozygous dcr-2_untreated	GSM379064 Vasa Mutant	S21 disk #2	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM379066 Zuc Mutant	GSM280087 S2cell (AGO2IP)	V064 ago2[414], ovary, AGO1IP	S8 S2-48,+48, KC-48, +48 mix	V024 kc167 cell	S16 KC -48 #1	GSM379054 Flam Heterozygote	V009 CMEL1	OSS8 Drosophila OSS cell small RNA libraries, rep4	S31 s2+48 #1	GSM379050 Armi Heterozygote	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM467729 WT	GSM180334 larvae: 1st instar and 3rd instars	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR029030 dcr-2 knockdown	SRR001347 ago2 untreated	V018 Kc167 cell	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V011 Sg4	SRR001664 homozygous dcr-2_untreated	V019 GM2 cell	V010 MLDmD20c5	GSM280088 S2cell (AGO1IP)	GSM379062 Squ Mutant	SRR014282 Ovary_rep1 wK_P	OSS7 Drosophila OSS cell small RNA libraries, rep3	V025 S2R+ cell	V008 S2-DRSC	GSM379052 Aub Heterozygote	GSM379055 Flam Mutant	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V028 CMEW1 Cl.8+ cell	S5 imaginal disc	V021 ML-DmD21 cell	SRR032093 ago1 knockdown	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010954 Aub trans-heterozygotes, oxidized	V020 S2R+ cell	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM280082 WT ovaries (18-29nt)	S24 male body #2	SRR001337 WT_females beta-eliminated	S23 female body #2	SRR010956 Piwi IP in Ago3 heterozygotes	V026 1182-4H cell	S20 2-4day pupae#2	SRR023399 RNA bound by P19 protein	GSM180335 imaginal discs	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	GSM467731 loq	SRR032096 AGO2 IP dcr2 knockdown	GSM467730 r2d2	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379058	SRR001341 WT_males non-beta-eliminated	S4 female body	SRR010952 Ago3 trans-heterozygotes, oxidized	S1 male head	S3 male body	SRR029032 r2d2 knockdown	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	GSM180329 adult bodies (female bodies, male bodies)	SRR010951 Ago3 heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029033 lacZ knockdown	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR029029 dcr-1 knockdown	SRR010959 Ago3 IP in heterozygotes	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	GSM280085 WT testes (18-24nt)	SRR001346 ago2 beta-eliminated	SRR010953 Aub heterozygotes, oxidized
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