Page generated on Fri Oct 15 12:01:41 2010

dme-mir-6-2



dme-mir-6-2

View dme-mir-6-2 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-6-2	123	80179		358	17756	1	62060	3	1	17	62060	17756

GCACACGAATAACCATGCCGTTTTTAACCCAAGGGAACTTCTGCTGCTGATATATTATTGAAAAACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAATTCCAACGATTTGTCA
........................(((((.((((((((..(..(((.(((((((.((((....)).)).))))))))))..)..)))))))).))))).........................-26.50
....((((((......(((((...(((((.((((((((..(..(((.(((((((.((((....)).)).))))))))))..)..)))))))).))))).)))))...........))))))..-35.83
Sense strand

	Size	Blast	Total	V081 embryo 2-6hr	V082 embryo 14-24hr	S10 2-6h #1 (8)	GSM180331 early embryo (2-6)	S14 0-1hr #1 (A)	GSM180332 mid embryo (6-10)	S11 2-6h #2 (9)	GSM180333 late embryo (12-24)	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	S34 KC+48 #1	S33 KC-48 #2	GSM180330 very early embryo (0-1)	S9 0-1h #3 (7)	S12 6-10h #1 (10)	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S13 6-10h #2 (11)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S29 male head #1	V001 IR-	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V002 IR+	S7 12-24hr embryo	S30 s2-48 #2	V083 male, one day	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM180328 adult heads (female heads, male heads)	V084 female, one day	V098 dcr-2[L811fsX] ovary	GSM467729 WT	S28 0-2d pupae	S35 KC+48 #2	GSM180335 imaginal discs	S2 female head	S32 s2+48 #2	GSM180334 larvae: 1st instar and 3rd instars	S22 female head #1	S26 1st instar #2	SRR031692 Total small RNAs from Oregon R	V063 CS,ovary,AGO1IP	V097 CS ovary	SRR001664 homozygous dcr-2_untreated	S27 0-1d Pupae (w)	GSM239052 S2 cells, non beta-eliminated	S19 2-4day pupae #1	GSM239051 S2 cells, beta-eliminated	SRR029633 total small RNAs from hen1 homozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	S16 KC -48 #1	S31 s2+48 #1	V076 ML-DmBG3-C2	S23 female body #2	GSM180337 tissue culture cells (S2 only)	V066 r2d2[1], ovary, AGO1IP	S18 3rd inster #2	SRR001343 dcr-2 non-beta-eliminated	GSM467731 loq	SRR014273 Ovary_rep1_Har_P	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	S25 1st instar #1	SRR014277 Ovary_rep1 NA_P	S8 S2-48,+48, KC-48, +48 mix	S15 S2 -48 #1	SRR031696_2152	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM379059	GSM180329 adult bodies (female bodies, male bodies)	GSM379066 Zuc Mutant	GSM280087 S2cell (AGO2IP)	GSM379067 SpnE Mutant	GSM379058	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	V090 CS  male total RNA	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V008 S2-DRSC	V018 Kc167 cell	S24 male body #2	SRR014282 Ovary_rep1 wK_P	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR032094 ago2 knockdown	V009 CMEL1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	S4 female body	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	V088 r2d2[1] ovary total RNA	GSM379065 Zuc Heterozygote	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR031693_4	GSM379050 Armi Heterozygote	GSM379056 Krimp Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	SRR001349 heterozygous dcr-2_untreated	V010 MLDmD20c5	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	SRR001345 ago2 non-beta-eliminated	GSM379063 Vasa Heterozygote	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM280084 loqs-/- ovaries (18-29nt)	SRR031703 Total small RNAs from r2d2 homozygous flies	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	V065 dcr-2[L811fsX], ovary, AGO1IP	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	V089 ago2[414] ovary total RNA	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM379064 Vasa Mutant	GSM379053 Aub Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR029029 dcr-1 knockdown	V028 CMEW1 Cl.8+ cell	GSM280088 S2cell (AGO1IP)	S3 male body	SRR010959 Ago3 IP in heterozygotes	SRR014280 Ovary_rep1 w1118_P	V026 1182-4H cell	SRR029032 r2d2 knockdown	OSS7 Drosophila OSS cell small RNA libraries, rep3	S5 imaginal disc	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	S21 disk #2	GSM379051 Armi Mutant	V075 ML-DmBG1-C1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM379062 Squ Mutant	V011 Sg4	V025 S2R+ cell	S20 2-4day pupae#2	GSM379061 Squ Heterozygote	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM379060 SpnE Heterozygote	SRR001338 IR non-beta-eliminated	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR029030 dcr-2 knockdown	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	V024 kc167 cell	V033 CMEW1 Cl.8+ cell	GSM280085 WT testes (18-24nt)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	S17 3rd inster #1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379057 Krimp Mutant	SRR010953 Aub heterozygotes, oxidized	V064 ago2[414], ovary, AGO1IP
.....CGAATAACCATGCCGTTTTTAA................................................................................................	22	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GAATAACCATGCCGTTTTTAACCCA............................................................................................	25	1	4	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GAATAACCATGCCGTTTTTAA................................................................................................	21	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AATAACCATGCCGTTTTTAACCCA............................................................................................	24	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ATAACCATGCCGTTTTTAACCC.............................................................................................	22	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ATAACCATGCCGTTTTTAACCCA............................................................................................	23	1	47	3	0	25	0	6	0	4	0	1	0	4	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TAACCATGCCGTTTTTAACCCA............................................................................................	22	1	103	12	0	16	0	25	0	18	0	12	0	2	0	0	9	0	2	3	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AACCATGCCGTTTTTAACCCA............................................................................................	21	1	107	15	0	31	3	30	0	4	0	3	0	6	8	2	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AACCATGCCGTTTTTAACC..............................................................................................	19	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ACCATGCCGTTTTTAACCCA............................................................................................	20	1	49	6	0	27	0	9	0	0	0	0	0	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CCATGCCGTTTTTAACCCA............................................................................................	19	1	14	3	0	2	0	6	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................CAAGGGAACTTCTGCTGCTGATA.......................................................................	23	1	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................AAGGGAACTTCTGCTGCTGATAT......................................................................	23	1	38	10	0	8	0	5	1	8	0	0	0	0	0	0	0	0	0	4	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................TATCACAGTGGCTGTTCTTTTTGG............................	24	1	3	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TATCACAGTGGCTGTTCTTT................................	20	3	1706	796	813	0	15	0	18	0	34	1	0	0	0	4	0	14	0	1	0	0	0	0	0	0	0	4	0	0	0	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TATCACAGTGGCTGTTCTTTTT..............................	22	3	47627	37004	6481	2	2224	17	923	0	525	1	0	0	0	357	0	47	0	2	0	0	2	0	0	1	0	7	0	8	9	3	5	0	0	3	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ATCACAGTGGCTGTTCTTTTT..............................	21	3	65	57	4	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ATCACAGTGGCTGTTCTTTT...............................	20	3	9	2	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ATCACAGTGGCTGTTCTTTTTG.............................	22	2	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TCACAGTGGCTGTTCTTTT...............................	19	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TCACAGTGGCTGTTCTTTTT..............................	20	3	22	13	3	0	1	0	1	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CACAGTGGCTGTTCTTTTT..............................	19	3	23	22	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CACAGTGGCTGTTCTTTT...............................	18	3	6	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ACAGTGGCTGTTCTTTTT..............................	18	3	112	97	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GGTTGCACGGCCAATTCCAAC.........	21	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GGTTGCACGGCCAATTCC............	18	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GGTTGCACGGCCAATTCCAA..........	20	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V081 embryo 2-6hr	V082 embryo 14-24hr	S10 2-6h #1 (8)	GSM180331 early embryo (2-6)	S14 0-1hr #1 (A)	GSM180332 mid embryo (6-10)	S11 2-6h #2 (9)	GSM180333 late embryo (12-24)	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	S34 KC+48 #1	S33 KC-48 #2	GSM180330 very early embryo (0-1)	S9 0-1h #3 (7)	S12 6-10h #1 (10)	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S13 6-10h #2 (11)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S29 male head #1	V001 IR-	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V002 IR+	S7 12-24hr embryo	S30 s2-48 #2	V083 male, one day	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM180328 adult heads (female heads, male heads)	V084 female, one day	V098 dcr-2[L811fsX] ovary	GSM467729 WT	S28 0-2d pupae	S35 KC+48 #2	GSM180335 imaginal discs	S2 female head	S32 s2+48 #2	GSM180334 larvae: 1st instar and 3rd instars	S22 female head #1	S26 1st instar #2	SRR031692 Total small RNAs from Oregon R	V063 CS,ovary,AGO1IP	V097 CS ovary	SRR001664 homozygous dcr-2_untreated	S27 0-1d Pupae (w)	GSM239052 S2 cells, non beta-eliminated	S19 2-4day pupae #1	GSM239051 S2 cells, beta-eliminated	SRR029633 total small RNAs from hen1 homozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	S16 KC -48 #1	S31 s2+48 #1	V076 ML-DmBG3-C2	S23 female body #2	GSM180337 tissue culture cells (S2 only)	V066 r2d2[1], ovary, AGO1IP	S18 3rd inster #2	SRR001343 dcr-2 non-beta-eliminated	GSM467731 loq	SRR014273 Ovary_rep1_Har_P	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	S25 1st instar #1	SRR014277 Ovary_rep1 NA_P	S8 S2-48,+48, KC-48, +48 mix	S15 S2 -48 #1	SRR031696_2152	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM379059	GSM180329 adult bodies (female bodies, male bodies)	GSM379066 Zuc Mutant	GSM280087 S2cell (AGO2IP)	GSM379067 SpnE Mutant	GSM379058	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	V090 CS  male total RNA	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V008 S2-DRSC	V018 Kc167 cell	S24 male body #2	SRR014282 Ovary_rep1 wK_P	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR032094 ago2 knockdown	V009 CMEL1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	S4 female body	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	V088 r2d2[1] ovary total RNA	GSM379065 Zuc Heterozygote	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR031693_4	GSM379050 Armi Heterozygote	GSM379056 Krimp Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	SRR001349 heterozygous dcr-2_untreated	V010 MLDmD20c5	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	SRR001345 ago2 non-beta-eliminated	GSM379063 Vasa Heterozygote	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM280084 loqs-/- ovaries (18-29nt)	SRR031703 Total small RNAs from r2d2 homozygous flies	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	V065 dcr-2[L811fsX], ovary, AGO1IP	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	V089 ago2[414] ovary total RNA	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM379064 Vasa Mutant	GSM379053 Aub Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR029029 dcr-1 knockdown	V028 CMEW1 Cl.8+ cell	GSM280088 S2cell (AGO1IP)	S3 male body	SRR010959 Ago3 IP in heterozygotes	SRR014280 Ovary_rep1 w1118_P	V026 1182-4H cell	SRR029032 r2d2 knockdown	OSS7 Drosophila OSS cell small RNA libraries, rep3	S5 imaginal disc	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	S21 disk #2	GSM379051 Armi Mutant	V075 ML-DmBG1-C1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM379062 Squ Mutant	V011 Sg4	V025 S2R+ cell	S20 2-4day pupae#2	GSM379061 Squ Heterozygote	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM379060 SpnE Heterozygote	SRR001338 IR non-beta-eliminated	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR029030 dcr-2 knockdown	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	V024 kc167 cell	V033 CMEW1 Cl.8+ cell	GSM280085 WT testes (18-24nt)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	S17 3rd inster #1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379057 Krimp Mutant	SRR010953 Aub heterozygotes, oxidized	V064 ago2[414], ovary, AGO1IP