Page generated on Fri Oct 15 12:01:23 2010

dme-mir-7



dme-mir-7

View dme-mir-7 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-7	137	884952	1	623	872708	13	11420	5	184	18	872708	11420

TTAACTAACCGATTGGTCCTCCTGGGAGTGCATTCCGTATGGAAGACTAGTGATTTTGTTGTTTGGTCTTTGGTAATAACAATAAATCCCTTGTCTTCTTACGGCGTGCATTTGTGCTCTTCATTCTATCGATGGTT
.........................((((((((.(((((.(((((((.((.(((((.((((((....(....)....))))))))))).)).)))))))))))).))))))))........................-33.90
......((((.((((((......((((((((((.(((((.(((((((.((.(((((.((((((....(....)....))))))))))).)).)))))))))))).))))......))))))......))))))))))-40.70
Sense strand

	Size	Blast	Total	V081 embryo 2-6hr	V098 dcr-2[L811fsX] ovary	V097 CS ovary	SRR001345 ago2 non-beta-eliminated	SRR031696_2152	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	SRR031701 Total small RNAs from r2d2 heterozygous flies	V090 CS  male total RNA	V082 embryo 14-24hr	SRR031692 Total small RNAs from Oregon R	V089 ago2[414] ovary total RNA	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001349 heterozygous dcr-2_untreated	V088 r2d2[1] ovary total RNA	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR001338 IR non-beta-eliminated	V063 CS,ovary,AGO1IP	V066 r2d2[1], ovary, AGO1IP	SRR001344 dcr-2 beta-eliminated	V083 male, one day	SRR001343 dcr-2 non-beta-eliminated	SRR001347 ago2 untreated	S29 male head #1	SRR001664 homozygous dcr-2_untreated	S12 6-10h #1 (10)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S10 2-6h #1 (8)	V084 female, one day	S13 6-10h #2 (11)	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V064 ago2[414], ovary, AGO1IP	S22 female head #1	SRR032095 AGO1 IP dcr2 knockdown	V001 IR-	GSM379063 Vasa Heterozygote	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM467730 r2d2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V076 ML-DmBG3-C2	GSM467729 WT	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014280 Ovary_rep1 w1118_P	V010 MLDmD20c5	V002 IR+	S21 disk #2	GSM379066 Zuc Mutant	GSM379052 Aub Heterozygote	S5 imaginal disc	GSM379062 Squ Mutant	S2 female head	V018 Kc167 cell	GSM379064 Vasa Mutant	GSM467731 loq	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM379060 SpnE Heterozygote	GSM379065 Zuc Heterozygote	S14 0-1hr #1 (A)	GSM379057 Krimp Mutant	S9 0-1h #3 (7)	SRR014275 Ovary_rep1 LK_P	S11 2-6h #2 (9)	SRR014282 Ovary_rep1 wK_P	V024 kc167 cell	V021 ML-DmD21 cell	SRR001337 WT_females beta-eliminated	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379050 Armi Heterozygote	GSM379051 Armi Mutant	SRR014273 Ovary_rep1_Har_P	GSM379058	GSM343287 Drosophila Toll 10b mutant embryos	V075 ML-DmBG1-C1	V033 CMEW1 Cl.8+ cell	GSM280082 WT ovaries (18-29nt)	V008 S2-DRSC	GSM379054 Flam Heterozygote	GSM379067 SpnE Mutant	V009 CMEL1	S24 male body #2	S19 2-4day pupae #1	SRR014277 Ovary_rep1 NA_P	GSM379053 Aub Mutant	S32 s2+48 #2	SRR029031 loqs-ORF knockdown	GSM379056 Krimp Heterozygote	SRR001348 ago2 oxidized	S27 0-1d Pupae (w)	S28 0-2d pupae	V028 CMEW1 Cl.8+ cell	S23 female body #2	GSM379059	GSM280085 WT testes (18-24nt)	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM239041 fly heads, non beta-eliminated	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR001346 ago2 beta-eliminated	GSM379061 Squ Heterozygote	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S33 KC-48 #2	V020 S2R+ cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	V011 Sg4	V026 1182-4H cell	S34 KC+48 #1	S31 s2+48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM180328 adult heads (female heads, male heads)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S1 male head	GSM280084 loqs-/- ovaries (18-29nt)	S7 12-24hr embryo	SRR029030 dcr-2 knockdown	V019 GM2 cell	GSM180331 early embryo (2-6)	V025 S2R+ cell	V067 S2-NP	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM180332 mid embryo (6-10)	S18 3rd inster #2	S15 S2 -48 #1	S30 s2-48 #2	SRR031693_4	SRR029028 untreated (mock)	GSM180335 imaginal discs	S16 KC -48 #1	S35 KC+48 #2	GSM379055 Flam Mutant	S17 3rd inster #1	S20 2-4day pupae#2	S4 female body	GSM424739 S2 parental	GSM280088 S2cell (AGO1IP)	SRR001340 IR beta-eliminated	SRR010955 Aub IP in Ago3 heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	S3 male body	SRR001342 WT_males beta-eliminated	SRR032094 ago2 knockdown	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	S8 S2-48,+48, KC-48, +48 mix	GSM239052 S2 cells, non beta-eliminated	SRR029032 r2d2 knockdown	GSM180333 late embryo (12-24)	SRR029029 dcr-1 knockdown	S25 1st instar #1	GSM180330 very early embryo (0-1)	GSM280087 S2cell (AGO2IP)	SRR032096 AGO2 IP dcr2 knockdown	SRR032093 ago1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	S26 1st instar #2	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010954 Aub trans-heterozygotes, oxidized	GSM180329 adult bodies (female bodies, male bodies)	SRR032092 mock oxidized	GSM246084 D. melanogaster adult male heads 454	GSM180337 tissue culture cells (S2 only)	SRR010953 Aub heterozygotes, oxidized	GSM239050 fly heads, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR023197 RNA Library from S2 control cells	SRR023400 total RNA extracted from P19 cells	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR023399 RNA bound by P19 protein	SRR010951 Ago3 heterozygotes, oxidized	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
.............TGGTCCTCCTGGGAGTGCATTCCGTA..................................................................................................	26	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GGTCCTCCTGGGAGTGCATTCCGTA..................................................................................................	25	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GTCCTCCTGGGAGTGCATTCCGTA..................................................................................................	24	1	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GTCCTCCTGGGAGTGCATTCCG....................................................................................................	22	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TCCTCCTGGGAGTGCATTCCGTA..................................................................................................	23	1	8	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CCTCCTGGGAGTGCATTCCGTA..................................................................................................	22	1	14	8	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTCCTGGGAGTGCATTCCGTA..................................................................................................	21	1	20	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	2	0	0	5	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCCTGGGAGTGCATTCCGTA..................................................................................................	20	1	182	27	0	1	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	10	0	26	0	15	12	0	0	0	2	1	0	9	0	0	3	0	0	0	0	1	0	3	1	0	0	0	0	0	1	0	0	1	1	0	12	0	4	0	7	0	0	1	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	1	3	0	1	0	0	0	2	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	13	0	0	0	0	1	3	0	0	0	1	1	1	1	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCCTGGGAGTGCATTCCGT...................................................................................................	19	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CCTGGGAGTGCATTCCGTA..................................................................................................	19	1	277	24	2	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	36	11	33	0	27	5	0	0	0	5	0	1	4	1	2	6	8	0	0	10	0	0	3	0	0	0	1	0	0	1	1	0	0	1	1	8	2	15	1	31	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	0	0	7	0	0	0	0	1	0	2	0	0	0	0	2	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CTGGGAGTGCATTCCGTA..................................................................................................	18	1	112	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	11	0	28	0	0	2	0	2	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	7	0	6	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	6	0	0	0	0	2	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AGTGCATTCCGTATGGAAGA...........................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TATGGAAGACTAGTGATTTTGTTG............................................................................	24	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................TTCTTACGGCGTGCATTTGTGC....................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CGGCGTGCATTTGTGCTCT.................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CGGCGTGCATTTGTGCTCTTCA..............	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CGGCGTGCATTTGTGCTCTT................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GGCGTGCATTTGTGCTCTTC...............	20	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GGCGTGCATTTGTGCTCTTCATTCT..........	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V081 embryo 2-6hr	V098 dcr-2[L811fsX] ovary	V097 CS ovary	SRR001345 ago2 non-beta-eliminated	SRR031696_2152	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	SRR031701 Total small RNAs from r2d2 heterozygous flies	V090 CS  male total RNA	V082 embryo 14-24hr	SRR031692 Total small RNAs from Oregon R	V089 ago2[414] ovary total RNA	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001349 heterozygous dcr-2_untreated	V088 r2d2[1] ovary total RNA	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR001338 IR non-beta-eliminated	V063 CS,ovary,AGO1IP	V066 r2d2[1], ovary, AGO1IP	SRR001344 dcr-2 beta-eliminated	V083 male, one day	SRR001343 dcr-2 non-beta-eliminated	SRR001347 ago2 untreated	S29 male head #1	SRR001664 homozygous dcr-2_untreated	S12 6-10h #1 (10)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S10 2-6h #1 (8)	V084 female, one day	S13 6-10h #2 (11)	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V064 ago2[414], ovary, AGO1IP	S22 female head #1	SRR032095 AGO1 IP dcr2 knockdown	V001 IR-	GSM379063 Vasa Heterozygote	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM467730 r2d2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V076 ML-DmBG3-C2	GSM467729 WT	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014280 Ovary_rep1 w1118_P	V010 MLDmD20c5	V002 IR+	S21 disk #2	GSM379066 Zuc Mutant	GSM379052 Aub Heterozygote	S5 imaginal disc	GSM379062 Squ Mutant	S2 female head	V018 Kc167 cell	GSM379064 Vasa Mutant	GSM467731 loq	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM379060 SpnE Heterozygote	GSM379065 Zuc Heterozygote	S14 0-1hr #1 (A)	GSM379057 Krimp Mutant	S9 0-1h #3 (7)	SRR014275 Ovary_rep1 LK_P	S11 2-6h #2 (9)	SRR014282 Ovary_rep1 wK_P	V024 kc167 cell	V021 ML-DmD21 cell	SRR001337 WT_females beta-eliminated	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379050 Armi Heterozygote	GSM379051 Armi Mutant	SRR014273 Ovary_rep1_Har_P	GSM379058	GSM343287 Drosophila Toll 10b mutant embryos	V075 ML-DmBG1-C1	V033 CMEW1 Cl.8+ cell	GSM280082 WT ovaries (18-29nt)	V008 S2-DRSC	GSM379054 Flam Heterozygote	GSM379067 SpnE Mutant	V009 CMEL1	S24 male body #2	S19 2-4day pupae #1	SRR014277 Ovary_rep1 NA_P	GSM379053 Aub Mutant	S32 s2+48 #2	SRR029031 loqs-ORF knockdown	GSM379056 Krimp Heterozygote	SRR001348 ago2 oxidized	S27 0-1d Pupae (w)	S28 0-2d pupae	V028 CMEW1 Cl.8+ cell	S23 female body #2	GSM379059	GSM280085 WT testes (18-24nt)	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM239041 fly heads, non beta-eliminated	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR001346 ago2 beta-eliminated	GSM379061 Squ Heterozygote	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S33 KC-48 #2	V020 S2R+ cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	V011 Sg4	V026 1182-4H cell	S34 KC+48 #1	S31 s2+48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM180328 adult heads (female heads, male heads)	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S1 male head	GSM280084 loqs-/- ovaries (18-29nt)	S7 12-24hr embryo	SRR029030 dcr-2 knockdown	V019 GM2 cell	GSM180331 early embryo (2-6)	V025 S2R+ cell	V067 S2-NP	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM180332 mid embryo (6-10)	S18 3rd inster #2	S15 S2 -48 #1	S30 s2-48 #2	SRR031693_4	SRR029028 untreated (mock)	GSM180335 imaginal discs	S16 KC -48 #1	S35 KC+48 #2	GSM379055 Flam Mutant	S17 3rd inster #1	S20 2-4day pupae#2	S4 female body	GSM424739 S2 parental	GSM280088 S2cell (AGO1IP)	SRR001340 IR beta-eliminated	SRR010955 Aub IP in Ago3 heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	S3 male body	SRR001342 WT_males beta-eliminated	SRR032094 ago2 knockdown	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	S8 S2-48,+48, KC-48, +48 mix	GSM239052 S2 cells, non beta-eliminated	SRR029032 r2d2 knockdown	GSM180333 late embryo (12-24)	SRR029029 dcr-1 knockdown	S25 1st instar #1	GSM180330 very early embryo (0-1)	GSM280087 S2cell (AGO2IP)	SRR032096 AGO2 IP dcr2 knockdown	SRR032093 ago1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	S26 1st instar #2	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010954 Aub trans-heterozygotes, oxidized	GSM180329 adult bodies (female bodies, male bodies)	SRR032092 mock oxidized	GSM246084 D. melanogaster adult male heads 454	GSM180337 tissue culture cells (S2 only)	SRR010953 Aub heterozygotes, oxidized	GSM239050 fly heads, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR023197 RNA Library from S2 control cells	SRR023400 total RNA extracted from P19 cells	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR023399 RNA bound by P19 protein	SRR010951 Ago3 heterozygotes, oxidized	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0
................TCCTCCTGGGAGTGCATTC......................................................................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0