Page generated on Fri Oct 15 12:01:20 2010

dme-mir-79



dme-mir-79

View dme-mir-79 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-79	146	1152041	1	113	17636	59	1134202	10	22	19	1134202	17636

ATACATTGCAATGAGTGCCTTAGAGTGAAGCTGACTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCTTCTGCAGGTCAATCGTCAGAAACAATTTAAGATAT
..........................((..(((....((((.((((((((...(((((((.((((((((.......)))..))))).)))))))...)))))))).)))).....))).)).........................-36.10
..................((((((.((...(((((..((((.((((((((...(((((((.((((((((.......)))..))))).)))))))...)))))))).)))).((....))......)))))...)).))))))....-42.20
Sense strand

	Size	Blast	Total	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS2 Drosophila OSS cell small RNA libraries, rep1	V098 dcr-2[L811fsX] ovary	V097 CS ovary	OSS7 Drosophila OSS cell small RNA libraries, rep3	V064 ago2[414], ovary, AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	V063 CS,ovary,AGO1IP	V088 r2d2[1] ovary total RNA	V066 r2d2[1], ovary, AGO1IP	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014275 Ovary_rep1 LK_P	V089 ago2[414] ovary total RNA	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR032095 AGO1 IP dcr2 knockdown	V076 ML-DmBG3-C2	GSM379065 Zuc Heterozygote	GSM379064 Vasa Mutant	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V033 CMEW1 Cl.8+ cell	SRR014277 Ovary_rep1 NA_P	S33 KC-48 #2	SRR014273 Ovary_rep1_Har_P	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V081 embryo 2-6hr	S32 s2+48 #2	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR014280 Ovary_rep1 w1118_P	GSM379063 Vasa Heterozygote	V024 kc167 cell	GSM379056 Krimp Heterozygote	GSM379057 Krimp Mutant	GSM280088 S2cell (AGO1IP)	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V028 CMEW1 Cl.8+ cell	GSM379062 Squ Mutant	SRR014282 Ovary_rep1 wK_P	GSM379066 Zuc Mutant	GSM379060 SpnE Heterozygote	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR029633 total small RNAs from hen1 homozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031696_2152	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR029028 untreated (mock)	S10 2-6h #1 (8)	V021 ML-DmD21 cell	GSM379061 Squ Heterozygote	V075 ML-DmBG1-C1	V009 CMEL1	GSM379052 Aub Heterozygote	SRR031692 Total small RNAs from Oregon R	SRR029031 loqs-ORF knockdown	S31 s2+48 #1	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR031701 Total small RNAs from r2d2 heterozygous flies	S29 male head #1	V067 S2-NP	GSM379051 Armi Mutant	S16 KC -48 #1	S14 0-1hr #1 (A)	GSM280082 WT ovaries (18-29nt)	V082 embryo 14-24hr	GSM379053 Aub Mutant	V026 1182-4H cell	S35 KC+48 #2	V018 Kc167 cell	GSM379067 SpnE Mutant	V090 CS  male total RNA	GSM379054 Flam Heterozygote	S9 0-1h #3 (7)	S30 s2-48 #2	V002 IR+	S28 0-2d pupae	GSM379058	V011 Sg4	V008 S2-DRSC	S34 KC+48 #1	SRR001345 ago2 non-beta-eliminated	GSM379050 Armi Heterozygote	S12 6-10h #1 (10)	S27 0-1d Pupae (w)	V083 male, one day	V010 MLDmD20c5	GSM379059	S15 S2 -48 #1	S13 6-10h #2 (11)	GSM343287 Drosophila Toll 10b mutant embryos	GSM379055 Flam Mutant	V084 female, one day	S19 2-4day pupae #1	GSM280084 loqs-/- ovaries (18-29nt)	S21 disk #2	SRR001349 heterozygous dcr-2_untreated	S23 female body #2	SRR029030 dcr-2 knockdown	SRR001347 ago2 untreated	V019 GM2 cell	V025 S2R+ cell	S5 imaginal disc	SRR031693_4	SRR001664 homozygous dcr-2_untreated	S11 2-6h #2 (9)	SRR001338 IR non-beta-eliminated	SRR029032 r2d2 knockdown	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S24 male body #2	SRR032094 ago2 knockdown	S22 female head #1	GSM467729 WT	SRR029029 dcr-1 knockdown	GSM424740 S2 pKF63 stably transfected	V001 IR-	S8 S2-48,+48, KC-48, +48 mix	SRR032093 ago1 knockdown	SRR029033 lacZ knockdown	GSM280087 S2cell (AGO2IP)	GSM467730 r2d2	SRR032092 mock oxidized	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR010959 Ago3 IP in heterozygotes	SRR001344 dcr-2 beta-eliminated	V020 S2R+ cell	S2 female head	GSM467731 loq	GSM424739 S2 parental	S17 3rd inster #1	SRR001343 dcr-2 non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	S20 2-4day pupae#2	S4 female body	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S1 male head	SRR032096 AGO2 IP dcr2 knockdown	S18 3rd inster #2	GSM180335 imaginal discs	S7 12-24hr embryo	GSM280085 WT testes (18-24nt)	GSM180331 early embryo (2-6)	GSM180330 very early embryo (0-1)	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM180328 adult heads (female heads, male heads)	SRR010955 Aub IP in Ago3 heterozygotes	GSM180337 tissue culture cells (S2 only)	SRR010954 Aub trans-heterozygotes, oxidized	S3 male body	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424741 S2 pKF63 transiently transfected	SRR001348 ago2 oxidized	GSM180332 mid embryo (6-10)	SRR010953 Aub heterozygotes, oxidized	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S25 1st instar #1	GSM180334 larvae: 1st instar and 3rd instars	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180329 adult bodies (female bodies, male bodies)	GSM180333 late embryo (12-24)	S26 1st instar #2	SRR001337 WT_females beta-eliminated	SRR001346 ago2 beta-eliminated	GSM280086 WT ovaries (AGO2IP)	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023400 total RNA extracted from P19 cells	SRR010960 wt, oxidized	GSM239041 fly heads, non beta-eliminated	SRR023399 RNA bound by P19 protein	GSM246084 D. melanogaster adult male heads 454	GSM239052 S2 cells, non beta-eliminated	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR023197 RNA Library from S2 control cells	SRR001342 WT_males beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM239051 S2 cells, beta-eliminated	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM239050 fly heads, beta-eliminated	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries
........CAATGAGTGCCTTAGAGTGAA.....................................................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAATGAGTGCCTTAGAGTGAAG....................................................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TTAGAGTGAAGCTGACTTGCCATTG......................................................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TAGAGTGAAGCTGACTTGCCATT.......................................................................................................	23	1	6	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGAGTGAAGCTGACTTGCCATT.......................................................................................................	22	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GAGTGAAGCTGACTTGCCATT.......................................................................................................	21	1	5	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AGTGAAGCTGACTTGCCATT.......................................................................................................	20	1	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTGAAGCTGACTTGCCATT.......................................................................................................	19	1	61	0	0	0	4	6	0	0	0	0	9	0	2	1	3	2	0	0	1	1	0	0	2	1	0	0	1	0	2	1	1	0	0	1	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	3	0	0	3	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	1	0	0	3	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTGAAGCTGACTTGCCATTG......................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TGAAGCTGACTTGCCATTG......................................................................................................	19	1	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TGAAGCTGACTTGCCATT.......................................................................................................	18	1	11	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GAAGCTGACTTGCCATTG......................................................................................................	18	1	6	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................ATTGCTTTGGCGCTTTAGCT......................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................AAAGCTAGATTACCAAAGCATTG......................................	23	1	33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AAAGCTAGATTACCAAAG...........................................	18	1	49	15	7	14	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AAAGCTAGATTACCAAAGCAT........................................	21	1	13308	1960	2216	1659	256	209	1276	230	223	264	167	162	96	86	70	85	120	58	93	75	70	69	71	63	116	38	63	62	45	66	69	28	51	26	58	37	59	40	142	30	29	24	34	37	25	33	99	117	70	81	66	18	40	26	18	19	15	56	203	49	33	48	44	73	23	30	16	19	23	13	13	21	15	18	20	12	14	31	7	14	14	28	23	16	30	12	17	16	19	3	15	13	8	14	8	13	4	322	17	6	9	24	4	4	7	5	36	9	5	13	13	25	8	8	40	35	58	0	3	4	2	3	14	22	32	11	3	10	5	8	179	0	3	6	3	1	3	1	3	12	2	2	0	1	3	0	0	0	7	0	2	0	1	1	0	0	0	0	1	2	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AAGCTAGATTACCAAAGCA.........................................	19	1	7	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AAGCTAGATTACCAAAGCAT........................................	20	1	511	27	28	11	7	7	23	9	13	65	5	6	6	7	1	4	11	2	2	6	0	2	6	1	29	1	3	0	5	6	0	0	3	1	0	0	7	7	11	0	1	2	2	1	1	0	8	9	10	0	6	8	0	4	1	0	0	5	9	12	0	0	6	3	0	2	3	0	1	0	0	2	1	1	1	0	14	10	5	3	1	0	1	1	0	0	0	0	1	0	0	4	1	2	0	2	10	0	2	0	1	5	0	1	1	0	1	0	0	0	0	2	3	0	3	1	0	0	0	3	0	0	1	0	0	0	0	0	0	0	1	0	2	1	1	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AAGCTAGATTACCAAAGC..........................................	18	1	5	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AAGCTAGATTACCAAAGCATT.......................................	21	1	31	1	5	6	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	1	0	0	1	4	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AGCTAGATTACCAAAGCA.........................................	18	1	12	1	2	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AGCTAGATTACCAAAGCAT........................................	19	1	210	11	11	9	0	2	4	1	7	68	4	2	3	1	1	2	5	1	0	1	0	1	1	0	0	1	0	0	0	16	0	0	1	0	0	0	0	4	0	0	0	1	0	2	1	0	1	1	0	0	0	0	0	0	1	0	0	0	0	4	0	0	0	2	0	1	1	0	0	0	1	0	0	1	0	0	0	1	1	2	0	0	0	5	0	0	0	1	2	0	1	4	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	6	0	0	3	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AGCTAGATTACCAAAGCATT.......................................	20	1	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................GCTAGATTACCAAAGCATT.......................................	19	1	6	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................GCTAGATTACCAAAGCAT........................................	18	1	529	28	36	21	7	8	25	12	7	26	1	6	22	19	2	12	10	7	0	0	3	1	4	13	12	6	9	4	1	11	1	0	3	2	0	0	0	66	2	0	2	2	0	4	2	2	2	4	0	0	5	8	2	0	0	0	0	0	9	4	0	0	4	0	2	1	6	32	1	0	1	6	0	1	0	1	2	4	0	3	0	0	0	6	0	0	0	1	1	0	0	2	4	0	0	1	1	0	0	2	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	3	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................CTAGATTACCAAAGCATT.......................................	18	1	10	3	2	1	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TGGCTTCTGCAGGTCAATCGTCAGAAA.............	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TGGCTTCTGCAGGTCAATCGT...................	21	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TGGCTTCTGCAGGTCAATCG....................	20	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TGGCTTCTGCAGGTCAATCGTCAGA...............	25	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS2 Drosophila OSS cell small RNA libraries, rep1	V098 dcr-2[L811fsX] ovary	V097 CS ovary	OSS7 Drosophila OSS cell small RNA libraries, rep3	V064 ago2[414], ovary, AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	V063 CS,ovary,AGO1IP	V088 r2d2[1] ovary total RNA	V066 r2d2[1], ovary, AGO1IP	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014275 Ovary_rep1 LK_P	V089 ago2[414] ovary total RNA	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR032095 AGO1 IP dcr2 knockdown	V076 ML-DmBG3-C2	GSM379065 Zuc Heterozygote	GSM379064 Vasa Mutant	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V033 CMEW1 Cl.8+ cell	SRR014277 Ovary_rep1 NA_P	S33 KC-48 #2	SRR014273 Ovary_rep1_Har_P	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V081 embryo 2-6hr	S32 s2+48 #2	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR014280 Ovary_rep1 w1118_P	GSM379063 Vasa Heterozygote	V024 kc167 cell	GSM379056 Krimp Heterozygote	GSM379057 Krimp Mutant	GSM280088 S2cell (AGO1IP)	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V028 CMEW1 Cl.8+ cell	GSM379062 Squ Mutant	SRR014282 Ovary_rep1 wK_P	GSM379066 Zuc Mutant	GSM379060 SpnE Heterozygote	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR029633 total small RNAs from hen1 homozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031696_2152	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR029028 untreated (mock)	S10 2-6h #1 (8)	V021 ML-DmD21 cell	GSM379061 Squ Heterozygote	V075 ML-DmBG1-C1	V009 CMEL1	GSM379052 Aub Heterozygote	SRR031692 Total small RNAs from Oregon R	SRR029031 loqs-ORF knockdown	S31 s2+48 #1	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR031701 Total small RNAs from r2d2 heterozygous flies	S29 male head #1	V067 S2-NP	GSM379051 Armi Mutant	S16 KC -48 #1	S14 0-1hr #1 (A)	GSM280082 WT ovaries (18-29nt)	V082 embryo 14-24hr	GSM379053 Aub Mutant	V026 1182-4H cell	S35 KC+48 #2	V018 Kc167 cell	GSM379067 SpnE Mutant	V090 CS  male total RNA	GSM379054 Flam Heterozygote	S9 0-1h #3 (7)	S30 s2-48 #2	V002 IR+	S28 0-2d pupae	GSM379058	V011 Sg4	V008 S2-DRSC	S34 KC+48 #1	SRR001345 ago2 non-beta-eliminated	GSM379050 Armi Heterozygote	S12 6-10h #1 (10)	S27 0-1d Pupae (w)	V083 male, one day	V010 MLDmD20c5	GSM379059	S15 S2 -48 #1	S13 6-10h #2 (11)	GSM343287 Drosophila Toll 10b mutant embryos	GSM379055 Flam Mutant	V084 female, one day	S19 2-4day pupae #1	GSM280084 loqs-/- ovaries (18-29nt)	S21 disk #2	SRR001349 heterozygous dcr-2_untreated	S23 female body #2	SRR029030 dcr-2 knockdown	SRR001347 ago2 untreated	V019 GM2 cell	V025 S2R+ cell	S5 imaginal disc	SRR031693_4	SRR001664 homozygous dcr-2_untreated	S11 2-6h #2 (9)	SRR001338 IR non-beta-eliminated	SRR029032 r2d2 knockdown	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S24 male body #2	SRR032094 ago2 knockdown	S22 female head #1	GSM467729 WT	SRR029029 dcr-1 knockdown	GSM424740 S2 pKF63 stably transfected	V001 IR-	S8 S2-48,+48, KC-48, +48 mix	SRR032093 ago1 knockdown	SRR029033 lacZ knockdown	GSM280087 S2cell (AGO2IP)	GSM467730 r2d2	SRR032092 mock oxidized	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR010959 Ago3 IP in heterozygotes	SRR001344 dcr-2 beta-eliminated	V020 S2R+ cell	S2 female head	GSM467731 loq	GSM424739 S2 parental	S17 3rd inster #1	SRR001343 dcr-2 non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	S20 2-4day pupae#2	S4 female body	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S1 male head	SRR032096 AGO2 IP dcr2 knockdown	S18 3rd inster #2	GSM180335 imaginal discs	S7 12-24hr embryo	GSM280085 WT testes (18-24nt)	GSM180331 early embryo (2-6)	GSM180330 very early embryo (0-1)	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM180328 adult heads (female heads, male heads)	SRR010955 Aub IP in Ago3 heterozygotes	GSM180337 tissue culture cells (S2 only)	SRR010954 Aub trans-heterozygotes, oxidized	S3 male body	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424741 S2 pKF63 transiently transfected	SRR001348 ago2 oxidized	GSM180332 mid embryo (6-10)	SRR010953 Aub heterozygotes, oxidized	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S25 1st instar #1	GSM180334 larvae: 1st instar and 3rd instars	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180329 adult bodies (female bodies, male bodies)	GSM180333 late embryo (12-24)	S26 1st instar #2	SRR001337 WT_females beta-eliminated	SRR001346 ago2 beta-eliminated	GSM280086 WT ovaries (AGO2IP)	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023400 total RNA extracted from P19 cells	SRR010960 wt, oxidized	GSM239041 fly heads, non beta-eliminated	SRR023399 RNA bound by P19 protein	GSM246084 D. melanogaster adult male heads 454	GSM239052 S2 cells, non beta-eliminated	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR023197 RNA Library from S2 control cells	SRR001342 WT_males beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM239051 S2 cells, beta-eliminated	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM239050 fly heads, beta-eliminated	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries
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