Page generated on Fri Oct 15 12:01:07 2010

dme-mir-8



dme-mir-8

View dme-mir-8 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-8	136	24607088	10	3	615756		23991077		262	15	23991077	615756

GGAATACCGAATCTTGCTAATTAGCAAGGACATCTGTTCACATCTTACCGGGCAGCATTAGATCCTTTTTATAACTCTAATACTGTCAGGTAAAGATGTCGTCCGTGTCCTTAACCTTCAGTACCACCAACAGCAG
.........................((((((((..(..(((((((((((.(((((.((((((.............)))))).))))).))).))))))).)..)))))))))........................-31.42
((..(((.(((...((((....)))).((((((..(..(((((((((((.(((((.((((((.............)))))).))))).))).))))))).)..)))))))......))).)))...))........-37.12
Sense strand

	Size	Blast	Total	V082 embryo 14-24hr	V090 CS  male total RNA	V083 male, one day	V097 CS ovary	V098 dcr-2[L811fsX] ovary	V084 female, one day	SRR031696_2152	V088 r2d2[1] ovary total RNA	V063 CS,ovary,AGO1IP	V089 ago2[414] ovary total RNA	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V066 r2d2[1], ovary, AGO1IP	V064 ago2[414], ovary, AGO1IP	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V001 IR-	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR029633 total small RNAs from hen1 homozygous flies	V033 CMEW1 Cl.8+ cell	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014275 Ovary_rep1 LK_P	V076 ML-DmBG3-C2	GSM379065 Zuc Heterozygote	V028 CMEW1 Cl.8+ cell	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR014277 Ovary_rep1 NA_P	GSM379057 Krimp Mutant	SRR001345 ago2 non-beta-eliminated	V002 IR+	SRR031692 Total small RNAs from Oregon R	V081 embryo 2-6hr	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014273 Ovary_rep1_Har_P	GSM379061 Squ Heterozygote	V008 S2-DRSC	V009 CMEL1	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR014280 Ovary_rep1 w1118_P	GSM379064 Vasa Mutant	V021 ML-DmD21 cell	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379063 Vasa Heterozygote	V075 ML-DmBG1-C1	GSM379051 Armi Mutant	GSM379066 Zuc Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR001349 heterozygous dcr-2_untreated	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	V025 S2R+ cell	GSM379060 SpnE Heterozygote	GSM280088 S2cell (AGO1IP)	S29 male head #1	V011 Sg4	V026 1182-4H cell	V019 GM2 cell	S24 male body #2	SRR001338 IR non-beta-eliminated	GSM379062 Squ Mutant	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	V020 S2R+ cell	SRR001664 homozygous dcr-2_untreated	GSM379052 Aub Heterozygote	GSM280085 WT testes (18-24nt)	GSM379050 Armi Heterozygote	V067 S2-NP	GSM379053 Aub Mutant	V010 MLDmD20c5	SRR001347 ago2 untreated	GSM379054 Flam Heterozygote	GSM379056 Krimp Heterozygote	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379058	SRR031693_4	V024 kc167 cell	V018 Kc167 cell	S33 KC-48 #2	SRR032095 AGO1 IP dcr2 knockdown	GSM379067 SpnE Mutant	SRR001343 dcr-2 non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR029031 loqs-ORF knockdown	SRR001344 dcr-2 beta-eliminated	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S28 0-2d pupae	S9 0-1h #3 (7)	GSM424740 S2 pKF63 stably transfected	SRR029028 untreated (mock)	S22 female head #1	S35 KC+48 #2	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM280082 WT ovaries (18-29nt)	GSM280083 dcr-2-/- ovaries (18-29nt)	S19 2-4day pupae #1	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM280084 loqs-/- ovaries (18-29nt)	SRR014282 Ovary_rep1 wK_P	S23 female body #2	S16 KC -48 #1	S27 0-1d Pupae (w)	GSM379059	GSM379055 Flam Mutant	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR029032 r2d2 knockdown	GSM467729 WT	SRR032094 ago2 knockdown	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR001348 ago2 oxidized	GSM424739 S2 parental	S34 KC+48 #1	S2 female head	GSM467730 r2d2	SRR029030 dcr-2 knockdown	SRR010959 Ago3 IP in heterozygotes	S32 s2+48 #2	SRR029033 lacZ knockdown	S12 6-10h #1 (10)	SRR032093 ago1 knockdown	SRR001337 WT_females beta-eliminated	GSM239041 fly heads, non beta-eliminated	S7 12-24hr embryo	SRR029029 dcr-1 knockdown	S30 s2-48 #2	S3 male body	SRR032092 mock oxidized	S13 6-10h #2 (11)	S4 female body	S31 s2+48 #1	GSM246084 D. melanogaster adult male heads 454	S10 2-6h #1 (8)	SRR010956 Piwi IP in Ago3 heterozygotes	GSM280087 S2cell (AGO2IP)	SRR010954 Aub trans-heterozygotes, oxidized	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S17 3rd inster #1	S8 S2-48,+48, KC-48, +48 mix	SRR010953 Aub heterozygotes, oxidized	S15 S2 -48 #1	S18 3rd inster #2	GSM180328 adult heads (female heads, male heads)	SRR010955 Aub IP in Ago3 heterozygotes	GSM343287 Drosophila Toll 10b mutant embryos	S1 male head	S26 1st instar #2	GSM467731 loq	S25 1st instar #1	GSM424741 S2 pKF63 transiently transfected	SRR001346 ago2 beta-eliminated	GSM239052 S2 cells, non beta-eliminated	S5 imaginal disc	S20 2-4day pupae#2	S21 disk #2	GSM180329 adult bodies (female bodies, male bodies)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM180333 late embryo (12-24)	SRR010960 wt, oxidized	SRR023400 total RNA extracted from P19 cells	SRR023197 RNA Library from S2 control cells	SRR032096 AGO2 IP dcr2 knockdown	SRR023399 RNA bound by P19 protein	S14 0-1hr #1 (A)	GSM180334 larvae: 1st instar and 3rd instars	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM239050 fly heads, beta-eliminated	GSM239051 S2 cells, beta-eliminated	SRR001340 IR beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR001342 WT_males beta-eliminated	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM180332 mid embryo (6-10)	GSM180335 imaginal discs	SRR023402 total RNA extracted from NLS-P19 cells	S11 2-6h #2 (9)	GSM180337 tissue culture cells (S2 only)	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM180331 early embryo (2-6)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM180330 very early embryo (0-1)	GSM280086 WT ovaries (AGO2IP)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)
.GAATACCGAATCTTGCTAATTAG................................................................................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TACCGAATCTTGCTAATTAGCAAG............................................................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATTAGCAAGGACATCTGTTCA................................................................................................	21	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTCACATCTTACCGGGCAGCATT.............................................................................	23	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CACATCTTACCGGGCAGCA...............................................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CACATCTTACCGGGCAGCATTAGA..........................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ACATCTTACCGGGCAGCATTA............................................................................	21	1	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ACATCTTACCGGGCAGCATTAG...........................................................................	22	1	43	0	0	0	2	0	0	1	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	7	0	0	0	0	0	0	0	1	12	0	0	0	1	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................ACATCTTACCGGGCAGCATTAGA..........................................................................	23	1	86	2	0	1	1	1	0	1	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	12	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	16	0	0	1	7	0	0	0	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	1	0	0	0	0	0	1	0	6	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	2	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ACATCTTACCGGGCAGCATT.............................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................CATCTTACCGGGCAGCATT.............................................................................	19	1	2230	7	241	40	15	45	24	51	8	14	8	15	10	26	37	20	43	13	310	69	64	8	7	2	23	29	4	4	0	32	25	4	12	4	2	19	2	14	0	4	12	5	5	9	4	0	13	9	0	10	0	11	33	10	3	36	33	24	1	8	8	17	12	1	9	0	24	0	6	9	2	1	12	0	27	6	4	152	7	1	0	8	1	0	4	8	23	0	5	5	44	3	5	4	5	0	2	0	10	44	9	0	2	0	0	10	3	36	25	0	23	4	1	4	0	25	4	0	3	0	0	0	0	16	6	0	0	1	8	0	0	0	2	16	0	1	10	27	11	1	0	0	0	4	0	4	0	0	0	1	0	2	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	1	1	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................TACTGTCAGGTAAAGATG......................................	18	1	211	3	9	11	17	10	16	12	6	12	4	1	4	7	3	10	2	3	8	2	3	3	1	0	1	2	5	0	0	0	3	1	3	1	0	0	0	2	0	0	1	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	2	0	1	0	0	0	3	0	1	0	0	0	0	0	1	0	2	1	0	0	0	0	1	1	1	0	0	0	1	0	0	0	0	0	0	0	2	1	0	0	0	0	1	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	2	1	0	0	0	0	0	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................ACTGTCAGGTAAAGATGTCGTC.................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................ACTGTCAGGTAAAGATGTC....................................	19	1	5930	1002	213	295	307	288	248	92	69	594	43	60	224	51	91	231	298	195	16	44	9	155	16	17	14	6	121	26	3	120	19	44	32	78	45	7	5	29	15	16	9	17	21	6	15	15	5	1	12	7	19	155	3	5	7	15	5	2	4	4	4	15	1	6	4	14	6	1	1	0	8	8	15	7	13	5	5	0	14	8	2	3	14	0	11	3	11	0	0	4	2	12	33	33	36	8	5	5	2	0	3	3	4	15	9	0	1	2	0	0	2	2	0	8	1	0	1	2	5	1	2	2	11	2	1	0	1	0	1	1	0	0	1	0	1	16	0	0	0	1	0	0	0	1	21	0	21	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.................................................................................ACTGTCAGGTAAAGATGTCGTCCGTGTC...........................	28	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................ACTGTCAGGTAAAGATGTCG...................................	20	1	3	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................ACTGTCAGGTAAAGATGT.....................................	18	1	1014	45	23	55	37	37	41	44	15	62	15	16	47	16	28	33	40	46	22	25	9	21	9	4	4	5	33	1	0	9	18	8	12	9	4	2	0	18	0	1	4	0	2	1	0	3	0	1	0	1	3	3	5	0	2	3	1	1	3	0	0	0	2	6	12	0	3	0	0	0	0	1	0	2	0	2	1	0	6	2	1	0	3	0	6	0	3	0	2	2	1	4	9	16	9	0	0	1	2	0	1	0	0	3	4	11	9	1	0	0	0	0	13	0	0	1	11	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	5	0	0	1	0	0	1	0	0	2	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..................................................................................CTGTCAGGTAAAGATGTCG...................................	19	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CTGTCAGGTAAAGATG......................................	16	1	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CTGTCAGGTAAAGATGT.....................................	17	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CTGTCAGGTAAAGATGTC....................................	18	1	5115	663	104	100	157	138	77	54	90	251	25	63	345	54	118	363	263	321	11	145	7	194	11	4	25	2	210	7	2	138	8	13	13	124	81	12	4	10	17	14	16	22	54	1	21	39	5	0	19	12	18	3	0	2	7	18	5	0	19	1	1	18	0	13	14	10	7	9	1	0	13	3	7	9	7	5	5	2	50	22	0	1	16	2	12	6	0	0	12	11	4	12	89	109	12	1	0	2	4	1	5	1	2	11	2	1	8	2	0	0	1	1	0	0	0	2	0	0	4	0	3	1	0	0	0	0	0	1	0	56	2	0	0	0	0	4	0	0	1	1	0	0	0	0	8	0	5	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TCAGGTAAAGATGTCGTCCGT..............................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GTAAAGATGTCGTCCGTG.............................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V082 embryo 14-24hr	V090 CS  male total RNA	V083 male, one day	V097 CS ovary	V098 dcr-2[L811fsX] ovary	V084 female, one day	SRR031696_2152	V088 r2d2[1] ovary total RNA	V063 CS,ovary,AGO1IP	V089 ago2[414] ovary total RNA	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V066 r2d2[1], ovary, AGO1IP	V064 ago2[414], ovary, AGO1IP	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V001 IR-	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR029633 total small RNAs from hen1 homozygous flies	V033 CMEW1 Cl.8+ cell	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014275 Ovary_rep1 LK_P	V076 ML-DmBG3-C2	GSM379065 Zuc Heterozygote	V028 CMEW1 Cl.8+ cell	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR014277 Ovary_rep1 NA_P	GSM379057 Krimp Mutant	SRR001345 ago2 non-beta-eliminated	V002 IR+	SRR031692 Total small RNAs from Oregon R	V081 embryo 2-6hr	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014273 Ovary_rep1_Har_P	GSM379061 Squ Heterozygote	V008 S2-DRSC	V009 CMEL1	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR014280 Ovary_rep1 w1118_P	GSM379064 Vasa Mutant	V021 ML-DmD21 cell	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379063 Vasa Heterozygote	V075 ML-DmBG1-C1	GSM379051 Armi Mutant	GSM379066 Zuc Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR001349 heterozygous dcr-2_untreated	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	V025 S2R+ cell	GSM379060 SpnE Heterozygote	GSM280088 S2cell (AGO1IP)	S29 male head #1	V011 Sg4	V026 1182-4H cell	V019 GM2 cell	S24 male body #2	SRR001338 IR non-beta-eliminated	GSM379062 Squ Mutant	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	V020 S2R+ cell	SRR001664 homozygous dcr-2_untreated	GSM379052 Aub Heterozygote	GSM280085 WT testes (18-24nt)	GSM379050 Armi Heterozygote	V067 S2-NP	GSM379053 Aub Mutant	V010 MLDmD20c5	SRR001347 ago2 untreated	GSM379054 Flam Heterozygote	GSM379056 Krimp Heterozygote	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379058	SRR031693_4	V024 kc167 cell	V018 Kc167 cell	S33 KC-48 #2	SRR032095 AGO1 IP dcr2 knockdown	GSM379067 SpnE Mutant	SRR001343 dcr-2 non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR029031 loqs-ORF knockdown	SRR001344 dcr-2 beta-eliminated	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S28 0-2d pupae	S9 0-1h #3 (7)	GSM424740 S2 pKF63 stably transfected	SRR029028 untreated (mock)	S22 female head #1	S35 KC+48 #2	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM280082 WT ovaries (18-29nt)	GSM280083 dcr-2-/- ovaries (18-29nt)	S19 2-4day pupae #1	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM280084 loqs-/- ovaries (18-29nt)	SRR014282 Ovary_rep1 wK_P	S23 female body #2	S16 KC -48 #1	S27 0-1d Pupae (w)	GSM379059	GSM379055 Flam Mutant	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR029032 r2d2 knockdown	GSM467729 WT	SRR032094 ago2 knockdown	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR001348 ago2 oxidized	GSM424739 S2 parental	S34 KC+48 #1	S2 female head	GSM467730 r2d2	SRR029030 dcr-2 knockdown	SRR010959 Ago3 IP in heterozygotes	S32 s2+48 #2	SRR029033 lacZ knockdown	S12 6-10h #1 (10)	SRR032093 ago1 knockdown	SRR001337 WT_females beta-eliminated	GSM239041 fly heads, non beta-eliminated	S7 12-24hr embryo	SRR029029 dcr-1 knockdown	S30 s2-48 #2	S3 male body	SRR032092 mock oxidized	S13 6-10h #2 (11)	S4 female body	S31 s2+48 #1	GSM246084 D. melanogaster adult male heads 454	S10 2-6h #1 (8)	SRR010956 Piwi IP in Ago3 heterozygotes	GSM280087 S2cell (AGO2IP)	SRR010954 Aub trans-heterozygotes, oxidized	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S17 3rd inster #1	S8 S2-48,+48, KC-48, +48 mix	SRR010953 Aub heterozygotes, oxidized	S15 S2 -48 #1	S18 3rd inster #2	GSM180328 adult heads (female heads, male heads)	SRR010955 Aub IP in Ago3 heterozygotes	GSM343287 Drosophila Toll 10b mutant embryos	S1 male head	S26 1st instar #2	GSM467731 loq	S25 1st instar #1	GSM424741 S2 pKF63 transiently transfected	SRR001346 ago2 beta-eliminated	GSM239052 S2 cells, non beta-eliminated	S5 imaginal disc	S20 2-4day pupae#2	S21 disk #2	GSM180329 adult bodies (female bodies, male bodies)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM180333 late embryo (12-24)	SRR010960 wt, oxidized	SRR023400 total RNA extracted from P19 cells	SRR023197 RNA Library from S2 control cells	SRR032096 AGO2 IP dcr2 knockdown	SRR023399 RNA bound by P19 protein	S14 0-1hr #1 (A)	GSM180334 larvae: 1st instar and 3rd instars	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM239050 fly heads, beta-eliminated	GSM239051 S2 cells, beta-eliminated	SRR001340 IR beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR001342 WT_males beta-eliminated	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM180332 mid embryo (6-10)	GSM180335 imaginal discs	SRR023402 total RNA extracted from NLS-P19 cells	S11 2-6h #2 (9)	GSM180337 tissue culture cells (S2 only)	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM180331 early embryo (2-6)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM180330 very early embryo (0-1)	GSM280086 WT ovaries (AGO2IP)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)
..........................AGGACATCTGTTCACATCTTACCGGGC...................................................................................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GACATCTGTTCACATCTTA.........................................................................................	19	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCACATCTTACCGGGCAGCATTA............................................................................	23	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CACATCTTACCGGGCAGCATTA............................................................................	22	1	2	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CACATCTTACCGGGCAGCATT.............................................................................	21	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TCCTTTTTATAACTCTAATACT....................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0