Page generated on Fri Oct 15 12:01:37 2010

dme-mir-87




dme-mir-87

View dme-mir-87 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-871481300655583371294402826129440583


TCGTTGACACCAAAGTCCTTTGGCAACACATTTCATTCGCGCCTGTATCTTGCTGAACCGCTGCCATTATGGCCAACGATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATCGGAGAATTTTCCAGTTTGG
........................((((((((((...((((((((.((.(((((.(((((..(((.....)))........))))).))))).))..))))))))...))))))))))..............................-40.90
..(((((..(((((....)))))..(((((((((...((((((((.((.(((((.(((((..(((.....)))........))))).))))).))..))))))))...)))))))))))))).......((((....)))).......-49.70
Sense strand
                                                                                                                                                    SizeBlastTotalV082 embryo 14-24hrV097 CS ovaryV090 CS  male total RNA  V083 male, one dayGSM379065 Zuc Heterozygote V084 female, one dayV098 dcr-2[L811fsX] ovaryV001 IR-SRR014280 Ovary_rep1 w1118_P S29 male head #1SRR014277 Ovary_rep1 NA_P V002 IR+V088 r2d2[1] ovary total RNA  GSM379051 Armi Mutant SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM280084 loqs-/- ovaries (18-29nt) GSM379057 Krimp Mutant GSM379059 S22 female head #1S24 male body #2SRR029633 total small RNAs from hen1 homozygous flies V063 CS,ovary,AGO1IPSRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 SRR031703 Total small RNAs from r2d2 homozygous flies SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR031697 Total small RNAs from dcr-2 heterozygous flies GSM379063 Vasa Heterozygote GSM379064 Vasa Mutant SRR031701 Total small RNAs from r2d2 heterozygous flies SRR031692 Total small RNAs from Oregon R GSM379061 Squ Heterozygote SRR031699 Total small RNAs from dcr-2 homozygous flies GSM379053 Aub Mutant V089 ago2[414] ovary total RNA  SRR001345 ago2 non-beta-eliminated GSM379055 Flam Mutant S7 12-24hr embryoGSM379054 Flam Heterozygote GSM379056 Krimp Heterozygote SRR014282 Ovary_rep1 wK_P S28 0-2d pupaeV081 embryo 2-6hrGSM467730 r2d2 V066 r2d2[1], ovary, AGO1IPGSM379050 Armi Heterozygote S2 female headGSM467729 WT SRR014275 Ovary_rep1 LK_P SRR014273 Ovary_rep1_Har_P S23 female body #2GSM379060 SpnE Heterozygote SRR031696_2152 SRR001349 heterozygous dcr-2_untreated V065 dcr-2[L811fsX], ovary, AGO1IPS27 0-1d Pupae (w)S26 1st instar #2GSM379052 Aub Heterozygote SRR001347 ago2 untreated GSM379062 Squ Mutant SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies S25 1st instar #1SRR001338 IR non-beta-eliminated GSM379066 Zuc Mutant GSM379067 SpnE Mutant S19 2-4day pupae #1SRR001343 dcr-2 non-beta-eliminated SRR001664 homozygous dcr-2_untreated SRR001344 dcr-2 beta-eliminated SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated S1 male headGSM379058 S4 female bodyS3 male bodyGSM467731 loq S13 6-10h #2 (11)S12 6-10h #1 (10)SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb GSM280083 dcr-2-/- ovaries (18-29nt) S9 0-1h #3 (7)V067 S2-NPS18 3rd inster #2SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM280082 WT ovaries (18-29nt) V064 ago2[414], ovary, AGO1IPSRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb GSM280087 S2cell (AGO2IP) SRR032092 mock oxidized S20 2-4day pupae#2GSM280088 S2cell (AGO1IP) SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies S5 imaginal discSRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb SRR032095 AGO1 IP dcr2 knockdown V008 S2-DRSCV019 GM2 cellS21 disk #2SRR029031 loqs-ORF knockdown S17 3rd inster #1SRR001348 ago2 oxidized S10 2-6h #1 (8)SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR001337 WT_females beta-eliminated SRR029028 untreated (mock) SRR032094 ago2 knockdown GSM280085 WT testes (18-24nt) SRR031693_4 SRR029032 r2d2 knockdown SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR010955 Aub IP in Ago3 heterozygotes SRR001346 ago2 beta-eliminated SRR029033 lacZ knockdown SRR010959 Ago3 IP in heterozygotes V076 ML-DmBG3-C2GSM180333 late embryo (12-24) GSM180328 adult heads (female heads, male heads) GSM343287 Drosophila Toll 10b mutant embryos S11 2-6h #2 (9)S14 0-1hr #1 (A)SRR001340 IR beta-eliminated SRR029030 dcr-2 knockdown GSM246084 D. melanogaster adult male heads 454 V011 Sg4V009 CMEL1S16 KC -48 #1SRR010956 Piwi IP in Ago3 heterozygotes V028 CMEW1 Cl.8+ cellV021 ML-DmD21 cellV018 Kc167 cellS34 KC+48 #1SRR001342 WT_males beta-eliminated GSM239050 fly heads, beta-eliminated GSM180331 early embryo (2-6) SRR032096 AGO2 IP dcr2 knockdownSRR032093 ago1 knockdown V024 kc167 cellV033 CMEW1 Cl.8+ cellGSM180329 adult bodies (female bodies, male bodies) GSM280086 WT ovaries (AGO2IP) GSM239051 S2 cells, beta-eliminated GSM180332 mid embryo (6-10) OSS8 Drosophila OSS cell small RNA libraries, rep4 GSM180335 imaginal discs GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries S32 s2+48 #2S31 s2+48 #1SRR010957 Aub IP in Ago3 trans-heterozygotes SRR010952 Ago3 trans-heterozygotes, oxidized GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day SRR023197 RNA Library from S2 control cells V010 MLDmD20c5GSM424740 S2 pKF63 stably transfected SRR010954 Aub trans-heterozygotes, oxidized SRR023400 total RNA extracted from P19 cells V020 S2R+ cellSRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR010960 wt, oxidized SRR023402 total RNA extracted from NLS-P19 cells OSS2 Drosophila OSS cell small RNA libraries, rep1 GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries S33 KC-48 #2GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) SRR029029 dcr-1 knockdown GSM180334 larvae: 1st instar and 3rd instars V026 1182-4H cellS8 S2-48,+48, KC-48, +48 mixOSS7 Drosophila OSS cell small RNA libraries, rep3 GSM180330 very early embryo (0-1) GSM424741 S2 pKF63 transiently transfected S15 S2 -48 #1GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 V075 ML-DmBG1-C1S30 s2-48 #2V025 S2R+ cellSRR023399 RNA bound by P19 protein GSM239052 S2 cells, non beta-eliminated GSM239041 fly heads, non beta-eliminated GSM424739 S2 parental OSS6 Drosophila OSS cell small RNA libraries, rep2 SRR010951 Ago3 heterozygotes, oxidized SRR010953 Aub heterozygotes, oxidized S35 KC+48 #2
....................................TCGCGCCTGTATCTTGCTG.............................................................................................1915000000020000000000000000000000000000000000100000000001000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCGCGCCTGTATCTTGCT..............................................................................................1811000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCGCGCCTGTATCTTGCTGA............................................................................................20125031010001001000000131101100100000000000000000202100000000001000000001000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCGCGCCTGTATCTTGCTGAA...........................................................................................21157163000001702000300132260000100010201000000000101100011220001100000000000000000001000000000000000000000000000000000000002000000000000000001000000000000000000000000000000000000000000000000000
....................................TCGCGCCTGTATCTTGCTGAAC..........................................................................................22129745410014214116941064212522434121140303211224004001170015100007021102001001030001000106000000000000000001000000000000200010010000000000000000000000000000100000000000000000000000000000000000000000000000
....................................TCGCGCCTGTATCTTGCTGAACC.........................................................................................231179522605041667012400902041221101103121234206002700202010300010001042110010000000000000500000000000000001000000200011000000041000000000000000100000000000000000000000000000000000000000000000000000
.....................................CGCGCCTGTATCTTGCTGAACCG........................................................................................2311000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CGCGCCTGTATCTTGCTGAAC..........................................................................................2116000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000
......................................GCGCCTGTATCTTGCTGAACC.........................................................................................2115000000000000000000010000000000000001000000010000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GCGCCTGTATCTTGCTGAACCG........................................................................................2211000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GCGCCTGTATCTTGCTGAAC..........................................................................................2014000000001000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CGCTGCCATTATGGCCAACGATCCGG................................................................2611000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CGCTGCCATTATGGCCAACGATCCGGT...............................................................2714100000000000000000000101000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GCTGCCATTATGGCCAACGATCCGG................................................................251261000000401003000000000010000000000000100000000000000000000000010000010000000000000000000000000000000000000000000012000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................GCTGCCATTATGGCCAACGATCC..................................................................2314000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GCTGCCATTATGGCCAACGATCCG.................................................................2411000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................ATTATGGCCAACGATCCGG................................................................1911000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTTGAGCAAAATTTCAGGTGTG...........................................22112011000000300000000010200000000000000000101000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTTGAGCAAAATTTCAGGTGTGT..........................................2319339155523110210101000022000100010000000002012000011011000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTTGAGCAAAATTTCAGGTGTGTGA........................................2517100000100000000100000000002000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTTGAGCAAAATTTCAGGTGTGTG.........................................24111210310000000000000011000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTGTG.........................................231191223388143121529439656365226784002847604622164387552573233542321161235681187175451441061961524342151821275324213481261141015132862086437310210026502526261629438255625417262054615151810512235742105832635232190211861314585110608631513000230300000000100001000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTGTGAG.......................................25155102203200000001000000000010000101000100100000100001500100000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTT..............................3411000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTGTGAGAA.....................................2711000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGT..............................................18117001000010000001000010000101000000000000000000000000000002100030000000100000000000000000200000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTG.............................................19130013001100300011000000001002100100010000001004000410000000010100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTGTGAGAAAT...................................2912000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTGT..........................................22110509115255430046212543302881296834212311311730163641646814246125214122273022622173394816812418179332935211810391864223046164440262529149267282413644411114157211638988202714620036114752240900143207140276520006073600000000001100100010000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTGTGA........................................24178725233341060838393896279423472672199218567941159129114969984881021615715682519424607726664622464595420486476400444452275424492460328329405328388197381181293272132154191187179227142143179125128125127146808511012911034113781008383327949194852491946362529173821101916302031816177121312141015108132602579467410140302120201101000011000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTGTGAGA......................................2619000000000000000000000000000000000000000000005000300000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGT............................................201219112419423210500252413202300130121072092101003120112031043105202200000001000000101030100100001100003000010000100000000000000000001000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTG...........................................21113968844241399426411616393634191532867353418141710632052678201052462711152081103751334109327022243011115243222221250031021240304012011023021000009310000000000100000000000000000100000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTGTGAGAAATGTGT...............................3311000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGCAAAATTTCAGGTGTGTGAGAAATG..................................3012000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGAGCAAAATTTCAGGTGTGTGA........................................231161044779114478674239749925333125367518322928217797132190121187407314169112133981401169997801149558766069110441985876531416880494212629413811546343931725722162431603517236223182722224318334582929411141625567884141977145407147134100120001020402013102001002000010000000000000000000000000000000000000000000000000000000
.....................................................................................TGAGCAAAATTTCAGGTGTG...........................................20131103110001410001001121000010010000000000000003001200100000000000000001000000010000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGAGCAAAATTTCAGGTGTGT..........................................211427121112146124104341211024331925950040131172072010003013182097003010603002100000701000200800000023000001000000000012000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.....................................................................................TGAGCAAAATTTCAGGTGTGTGAG.......................................241551722001010211000001011001000000010000002002007100500000000000010000000000001030000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGAGCAAAATTTCAGGTGTGTGAGA......................................2513000000000000000000000000000000000000000000002000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGAGCAAAATTTCAGGTGTGTGAGAA.....................................2611000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGAGCAAAATTTCAGGTGT............................................19127102000000200000000004100010200000100100000102000200003000000001000000000000010000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGAGCAAAATTTCAGGTGTGTG.........................................221248730372361127968232495524172532857105246838292667641359108211843111214611612101553761376291011159402110107121502222020008397131101332110313000111513253000000011000000000100000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GAGCAAAATTTCAGGTGTGTG.........................................21112431100000000000000000000000000000100000000001000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GAGCAAAATTTCAGGTGTGT..........................................2016012200000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GAGCAAAATTTCAGGTGTGTGA........................................221611873224200001111010000400000301110100001000002000000000110001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AGCAAAATTTCAGGTGTGTGA........................................2114000001010000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AGCAAAATTTCAGGTGTG...........................................1811000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AGCAAAATTTCAGGTGTGTG.........................................2012000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GCAAAATTTCAGGTGTGT..........................................1811001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GCAAAATTTCAGGTGTGTGA........................................2017000000000000000000000100000000000000000000000001000000000300001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAAAATTTCAGGTGTGTGA........................................1911000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AAAATTTCAGGTGTGTGA........................................1814100000000000110000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTAGCATTCATCGGAGAATTT..........2111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                                    SizeBlastTotalV082 embryo 14-24hrV097 CS ovaryV090 CS  male total RNA  V083 male, one dayGSM379065 Zuc Heterozygote V084 female, one dayV098 dcr-2[L811fsX] ovaryV001 IR-SRR014280 Ovary_rep1 w1118_P S29 male head #1SRR014277 Ovary_rep1 NA_P V002 IR+V088 r2d2[1] ovary total RNA  GSM379051 Armi Mutant SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM280084 loqs-/- ovaries (18-29nt) GSM379057 Krimp Mutant GSM379059 S22 female head #1S24 male body #2SRR029633 total small RNAs from hen1 homozygous flies V063 CS,ovary,AGO1IPSRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 SRR031703 Total small RNAs from r2d2 homozygous flies SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR031697 Total small RNAs from dcr-2 heterozygous flies GSM379063 Vasa Heterozygote GSM379064 Vasa Mutant SRR031701 Total small RNAs from r2d2 heterozygous flies SRR031692 Total small RNAs from Oregon R GSM379061 Squ Heterozygote SRR031699 Total small RNAs from dcr-2 homozygous flies GSM379053 Aub Mutant V089 ago2[414] ovary total RNA  SRR001345 ago2 non-beta-eliminated GSM379055 Flam Mutant S7 12-24hr embryoGSM379054 Flam Heterozygote GSM379056 Krimp Heterozygote SRR014282 Ovary_rep1 wK_P S28 0-2d pupaeV081 embryo 2-6hrGSM467730 r2d2 V066 r2d2[1], ovary, AGO1IPGSM379050 Armi Heterozygote S2 female headGSM467729 WT SRR014275 Ovary_rep1 LK_P SRR014273 Ovary_rep1_Har_P S23 female body #2GSM379060 SpnE Heterozygote SRR031696_2152 SRR001349 heterozygous dcr-2_untreated V065 dcr-2[L811fsX], ovary, AGO1IPS27 0-1d Pupae (w)S26 1st instar #2GSM379052 Aub Heterozygote SRR001347 ago2 untreated GSM379062 Squ Mutant SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies S25 1st instar #1SRR001338 IR non-beta-eliminated GSM379066 Zuc Mutant GSM379067 SpnE Mutant S19 2-4day pupae #1SRR001343 dcr-2 non-beta-eliminated SRR001664 homozygous dcr-2_untreated SRR001344 dcr-2 beta-eliminated SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated S1 male headGSM379058 S4 female bodyS3 male bodyGSM467731 loq S13 6-10h #2 (11)S12 6-10h #1 (10)SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb GSM280083 dcr-2-/- ovaries (18-29nt) S9 0-1h #3 (7)V067 S2-NPS18 3rd inster #2SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM280082 WT ovaries (18-29nt) V064 ago2[414], ovary, AGO1IPSRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb GSM280087 S2cell (AGO2IP) SRR032092 mock oxidized S20 2-4day pupae#2GSM280088 S2cell (AGO1IP) SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies S5 imaginal discSRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb SRR032095 AGO1 IP dcr2 knockdown V008 S2-DRSCV019 GM2 cellS21 disk #2SRR029031 loqs-ORF knockdown S17 3rd inster #1SRR001348 ago2 oxidized S10 2-6h #1 (8)SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR001337 WT_females beta-eliminated SRR029028 untreated (mock) SRR032094 ago2 knockdown GSM280085 WT testes (18-24nt) SRR031693_4 SRR029032 r2d2 knockdown SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR010955 Aub IP in Ago3 heterozygotes SRR001346 ago2 beta-eliminated SRR029033 lacZ knockdown SRR010959 Ago3 IP in heterozygotes V076 ML-DmBG3-C2GSM180333 late embryo (12-24) GSM180328 adult heads (female heads, male heads) GSM343287 Drosophila Toll 10b mutant embryos S11 2-6h #2 (9)S14 0-1hr #1 (A)SRR001340 IR beta-eliminated SRR029030 dcr-2 knockdown GSM246084 D. melanogaster adult male heads 454 V011 Sg4V009 CMEL1S16 KC -48 #1SRR010956 Piwi IP in Ago3 heterozygotes V028 CMEW1 Cl.8+ cellV021 ML-DmD21 cellV018 Kc167 cellS34 KC+48 #1SRR001342 WT_males beta-eliminated GSM239050 fly heads, beta-eliminated GSM180331 early embryo (2-6) SRR032096 AGO2 IP dcr2 knockdownSRR032093 ago1 knockdown V024 kc167 cellV033 CMEW1 Cl.8+ cellGSM180329 adult bodies (female bodies, male bodies) GSM280086 WT ovaries (AGO2IP) GSM239051 S2 cells, beta-eliminated GSM180332 mid embryo (6-10) OSS8 Drosophila OSS cell small RNA libraries, rep4 GSM180335 imaginal discs GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries S32 s2+48 #2S31 s2+48 #1SRR010957 Aub IP in Ago3 trans-heterozygotes SRR010952 Ago3 trans-heterozygotes, oxidized GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day SRR023197 RNA Library from S2 control cells V010 MLDmD20c5GSM424740 S2 pKF63 stably transfected SRR010954 Aub trans-heterozygotes, oxidized SRR023400 total RNA extracted from P19 cells V020 S2R+ cellSRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR010960 wt, oxidized SRR023402 total RNA extracted from NLS-P19 cells OSS2 Drosophila OSS cell small RNA libraries, rep1 GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries S33 KC-48 #2GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) SRR029029 dcr-1 knockdown GSM180334 larvae: 1st instar and 3rd instars V026 1182-4H cellS8 S2-48,+48, KC-48, +48 mixOSS7 Drosophila OSS cell small RNA libraries, rep3 GSM180330 very early embryo (0-1) GSM424741 S2 pKF63 transiently transfected S15 S2 -48 #1GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 V075 ML-DmBG1-C1S30 s2-48 #2V025 S2R+ cellSRR023399 RNA bound by P19 protein GSM239052 S2 cells, non beta-eliminated GSM239041 fly heads, non beta-eliminated GSM424739 S2 parental OSS6 Drosophila OSS cell small RNA libraries, rep2 SRR010951 Ago3 heterozygotes, oxidized SRR010953 Aub heterozygotes, oxidized S35 KC+48 #2
............................CATTTCATTCGCGCCTGTATCT..................................................................................................2211000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CCTGTATCTTGCTGAACCGCT......................................................................................2111000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGTATCTTGCTGAACCGCT......................................................................................1911000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TATCTTGCTGAACCGCTGCCAT.................................................................................2211000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................AAATGTGTTTAGCATTCATCGGAGA..............2511000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000