Page generated on Fri Oct 15 12:01:33 2010

dme-mir-92b




dme-mir-92b

View dme-mir-92b on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-92b149250214225445414244343210182443435445


CCGAGATGTGAGTGCAGTGGTACATTAAAACGTCACCTGATGTAGGCCGTGCCCAGTGCTTATTTGTTGCATTTTCGAAATACAAATTGCACTAGTCCCGGCCTGCAATGAGTGTCGCAGTCGACGATCTACACAGTGCAAAATAATTT
..............................((.(((..(.(((((((((.(.(.(((((..((((((..(......)....)))))).))))).).).))))))))).)..))).))................................-33.50
..(...((((.((((....)))).......((((..(((.(((((((((.(.(.(((((..((((((..(......)....)))))).))))).).).)))))))))..(.....).)))..)))).....))))...)..........-42.70
Sense strand
                                                                                                                                                     SizeBlastTotalOSS6 Drosophila OSS cell small RNA libraries, rep2 OSS2 Drosophila OSS cell small RNA libraries, rep1 OSS8 Drosophila OSS cell small RNA libraries, rep4 OSS7 Drosophila OSS cell small RNA libraries, rep3 V065 dcr-2[L811fsX], ovary, AGO1IPV063 CS,ovary,AGO1IPV097 CS ovaryV066 r2d2[1], ovary, AGO1IPV064 ago2[414], ovary, AGO1IPV098 dcr-2[L811fsX] ovaryV081 embryo 2-6hrV021 ML-DmD21 cellS10 2-6h #1 (8)SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb S13 6-10h #2 (11)S14 0-1hr #1 (A)V088 r2d2[1] ovary total RNA  S12 6-10h #1 (10)V033 CMEW1 Cl.8+ cellSRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 GSM379065 Zuc Heterozygote V089 ago2[414] ovary total RNA  SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 SRR014275 Ovary_rep1 LK_P SRR010959 Ago3 IP in heterozygotes GSM379060 SpnE Heterozygote GSM379058 GSM379052 Aub Heterozygote SRR014280 Ovary_rep1 w1118_P S9 0-1h #3 (7)GSM379066 Zuc Mutant SRR014277 Ovary_rep1 NA_P GSM379057 Krimp Mutant V028 CMEW1 Cl.8+ cellSRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 SRR014282 Ovary_rep1 wK_P GSM379051 Armi Mutant SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR010956 Piwi IP in Ago3 heterozygotes GSM379054 Flam Heterozygote GSM379062 Squ Mutant S33 KC-48 #2SRR010955 Aub IP in Ago3 heterozygotes GSM379064 Vasa Mutant SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 GSM379067 SpnE Mutant GSM379063 Vasa Heterozygote S11 2-6h #2 (9)GSM379050 Armi Heterozygote SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR014273 Ovary_rep1_Har_P SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM379056 Krimp Heterozygote GSM280083 dcr-2-/- ovaries (18-29nt) S28 0-2d pupaeS21 disk #2GSM379053 Aub Mutant GSM280085 WT testes (18-24nt) V001 IR-GSM379061 Squ Heterozygote S23 female body #2GSM280084 loqs-/- ovaries (18-29nt) GSM379059 SRR010954 Aub trans-heterozygotes, oxidized GSM343287 Drosophila Toll 10b mutant embryos V002 IR+S27 0-1d Pupae (w)S5 imaginal discGSM280082 WT ovaries (18-29nt) SRR010953 Aub heterozygotes, oxidized V011 Sg4GSM467729 WT S16 KC -48 #1S19 2-4day pupae #1S34 KC+48 #1GSM180331 early embryo (2-6) SRR031696_2152 GSM379055 Flam Mutant V075 ML-DmBG1-C1V082 embryo 14-24hrSRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb V076 ML-DmBG3-C2S4 female bodyGSM180330 very early embryo (0-1) GSM467730 r2d2 GSM180332 mid embryo (6-10) S29 male head #1SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR029633 total small RNAs from hen1 homozygous flies GSM180335 imaginal discs SRR010960 wt, oxidized V024 kc167 cellSRR031701 Total small RNAs from r2d2 heterozygous flies SRR031703 Total small RNAs from r2d2 homozygous flies SRR031692 Total small RNAs from Oregon R SRR031693_4 V018 Kc167 cellS17 3rd inster #1S22 female head #1SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR001338 IR non-beta-eliminated SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies GSM467731 loq SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies SRR010951 Ago3 heterozygotes, oxidized SRR031699 Total small RNAs from dcr-2 homozygous flies S7 12-24hr embryoV009 CMEL1V026 1182-4H cellS35 KC+48 #2S32 s2+48 #2V084 female, one daySRR010952 Ago3 trans-heterozygotes, oxidized S24 male body #2S18 3rd inster #2SRR032092 mock oxidized GSM180333 late embryo (12-24) S20 2-4day pupae#2V090 CS  male total RNA  S31 s2+48 #1S2 female headGSM180329 adult bodies (female bodies, male bodies) V010 MLDmD20c5SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies GSM180334 larvae: 1st instar and 3rd instars S8 S2-48,+48, KC-48, +48 mixSRR001345 ago2 non-beta-eliminated SRR001343 dcr-2 non-beta-eliminated V067 S2-NPS15 S2 -48 #1S30 s2-48 #2GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) V020 S2R+ cellGSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 S3 male bodyS25 1st instar #1V008 S2-DRSCGSM280088 S2cell (AGO1IP) V025 S2R+ cellSRR001664 homozygous dcr-2_untreated V083 male, one dayGSM180328 adult heads (female heads, male heads) SRR032094 ago2 knockdown SRR001341 WT_males non-beta-eliminated SRR029032 r2d2 knockdown SRR001339 WT_females non-beta-eliminated SRR001347 ago2 untreated V019 GM2 cellS1 male headSRR001349 heterozygous dcr-2_untreated GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM280087 S2cell (AGO2IP) GSM239051 S2 cells, beta-eliminated GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR001337 WT_females beta-eliminated SRR001344 dcr-2 beta-eliminated S26 1st instar #2GSM239052 S2 cells, non beta-eliminated SRR029028 untreated (mock) GSM180337 tissue culture cells (S2 only) GSM239050 fly heads, beta-eliminated GSM239041 fly heads, non beta-eliminated GSM280086 WT ovaries (AGO2IP) SRR029031 loqs-ORF knockdown SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023400 total RNA extracted from P19 cells SRR023407 RNA bound by NLS-P19 protein SRR001340 IR beta-eliminated SRR023399 RNA bound by P19 protein SRR029030 dcr-2 knockdown SRR032093 ago1 knockdown SRR001346 ago2 beta-eliminated SRR023197 RNA Library from S2 control cells SRR029033 lacZ knockdown GSM424740 S2 pKF63 stably transfected SRR023402 total RNA extracted from NLS-P19 cells GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries SRR001342 WT_males beta-eliminated GSM246084 D. melanogaster adult male heads 454 SRR032095 AGO1 IP dcr2 knockdown SRR029029 dcr-1 knockdown GSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownSRR001348 ago2 oxidized GSM424739 S2 parental
........................TTAAAACGTCACCTGATGTAG........................................................................................................2111000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TAAAACGTCACCTGATGT..........................................................................................................1811000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TAGGCCGTGCCCAGTGCTTATTT....................................................................................2312010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TAGGCCGTGCCCAGTGCTTATTTG...................................................................................2412000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TAGGCCGTGCCCAGTGCTTAT......................................................................................2112000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTATTTGTTGC...............................................................................2712000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTATTT....................................................................................2217655942443223230010120114276306919631000000009100210000015000103710000122308005000022140001110416000010030220000000000231000001200200020010031000000000000000000000000000000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTATTTGTTGCATTTTCGA.......................................................................3511000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTATTTG...................................................................................2314092796852582123312752624023969293883192566121616848690251449135151286501564169402667041162622317121252201112823102518714178024751716427240030000200101310000001500300024062100000220001010001200000100000010000000100000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTATTTGTT.................................................................................2515000000000000300001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTATTTGTTGCATTTTCG........................................................................3411000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTATTTGTTG................................................................................2611000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTAT......................................................................................20110511151210000000106311107120100000000000000000000010000030000001100003000602000011100000000000020000000000010000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTT........................................................................................18110102000000000000002000000000000000000000000010000000000000000000000000000002000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTATTTGT..................................................................................24166565902000051907001000000000000000000000000110010031000001100001000000200010100000000000000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTA.......................................................................................19129523400000000304003000000000000000000000000000000000000000100000000000200002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGGCCGTGCCCAGTGCTTATT.....................................................................................21132225333018000200503611267113113000000000005000000000003000002800000031802102000011800001204001120010230010000000021000000100010010000001100000000000000100000000000010000000000000000000010000000000000000
............................................GGCCGTGCCCAGTGCTTATTTGT..................................................................................2314000000000000101000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GGCCGTGCCCAGTGCTTATTTG...................................................................................22124000010000000303500000000000000000000000000040000020000001000000000000000001101000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
............................................GGCCGTGCCCAGTGCTTATT.....................................................................................2013000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GGCCGTGCCCAGTGCTTATTT....................................................................................2112000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GGCCGTGCCCAGTGCTTAT......................................................................................1911000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GCCGTGCCCAGTGCTTATTTGTT.................................................................................2313000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GCCGTGCCCAGTGCTTATTTG...................................................................................2114000000000010000000000000000000000000000000000000010000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................CGTGCCCAGTGCTTATTTGTT.................................................................................2111001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TGCCCAGTGCTTATTTGTTGCAT.............................................................................2311000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TTATTTGTTGCATTTTCGAAATACA.................................................................2511000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ATTTGTTGCATTTTCGAAATACA.................................................................2311000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GTTGCATTTTCGAAATAC..................................................................1811000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GTTGCATTTTCGAAATACAA................................................................2011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GTTGCATTTTCGAAATACA.................................................................1912010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..................................................................TTGCATTTTCGAAATACAAA...............................................................20112010010000100020100000100000000000100010000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TTGCATTTTCGAAATACAAATTGC...........................................................2411001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TTGCATTTTCGAAATACAAATTGCACT........................................................2711001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TTGCATTTTCGAAATACAA................................................................19156862222000000021522024100110200101000000000000001000000000000001000000020000000000010000030000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TTGCATTTTCGAAATACA.................................................................18133942422533000000763160138012200200010010050100100000010000010001010000010000011320000040002740000005200010001101060301000000000000000005000000000000000000000000001000000000000000000000000000000000000
...................................................................TGCATTTTCGAAATACAA................................................................1812100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ACAAATTGCACTAGTCCCGGCCTGC...........................................2511010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CAAATTGCACTAGTCCCGGCC..............................................2115002010000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CAAATTGCACTAGTCCCGGCCTGC...........................................2411100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CAAATTGCACTAGTCCCGGCCTG............................................2316110000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CAAATTGCACTAGTCCCGG................................................1911000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CAAATTGCACTAGTCCCGGC...............................................2011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CAAATTGCACTAGTCCCG.................................................1811001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CAAATTGCACTAGTCCCGGCCT.............................................22119214130010000000000000000000000002000001000000100001010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAATTGCACTAGTCCCGGCCTGCAAT........................................2612000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAATTGCACTAGTCCCGGCCTGCA..........................................2416011000110000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAATTGCACTAGTCCCGGCC..............................................20115333200000000000000000000000000000000100000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAATTGCACTAGTCCCGGC...............................................1917131000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAATTGCACTAGTCCCGGCCT.............................................211125132012510120241508223102100411001002010001201020100110010110110100000001100011000000100000200210000000000000100000000000000000000010000000030000000000000000000000000000000000000000000000000000
...................................................................................AAATTGCACTAGTCCCGG................................................1813001000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAATTGCACTAGTCCCGGCCTGCAA.........................................2516000010000000300000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
...................................................................................AAATTGCACTAGTCCCGGCCTGC...........................................23149074695743731222610518208453345310475522141411033505111221060232204401312211024201101212030000200100100011010000000000110000000000000100000000010000000000000000000100000000000000000000000000000000000
...................................................................................AAATTGCACTAGTCCCGGCCTG............................................2212081916109643704615365432405119201111220001210013403001202110020021001010100100000010000000200080100102600000010000000000000100000000000000100100000000000000000000000000000000000000000000000000000
....................................................................................AATTGCACTAGTCCCGGCCTGCAAT........................................2518120000000000000000000000000000000000000000000000000000000000000000000000030010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AATTGCACTAGTCCCGGCCTGC...........................................22114889319502188191652114213423736803994330416253091301723261056149216429231389117610751326122116581563145013611200157713341461110710795971192103188687596792410517451066941893621954740922774593401750776618718391324449426481460472506357419380646437354272202344102311762061081532111981161671237814787751191031378677905561625057625029524945253943472633361420252617192216162481014169151019125108910615958756557874464505443020020010100101100000000000000
....................................................................................AATTGCACTAGTCCCGGCCT.............................................2011542813691370127310308298662733894693113292021632332682111452825111751155619654861301181591143415243117202197548783620885419208368721004560088281055561749172294947758720333304650291872277214720293165132041813151262241321698623753701322344873032030313111450331000204022021100102202000001000100000000000000000000000000
....................................................................................AATTGCACTAGTCCCGGCCTGCAATGAG.....................................2812000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AATTGCACTAGTCCCGGCCTG............................................21169177297927502572204469305696297234914252286723141250735133168111791168467959101411345955547667417383584643426135807073864995245095285443126182842933373312173772223164182612712852952534104662432022131681901372241831982332117910312124516531371447213377886410082100123669872466619593953724262914241921221552865861311201111198113141139108436481061065625163545452023301050000000000101010000000000000000000
....................................................................................AATTGCACTAGTCCCGGCCTGCAATGAGTGTCGCA..............................3512000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AATTGCACTAGTCCCGGCCTGCAATG.......................................2613100000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AATTGCACTAGTCCCGGCCTGCA..........................................2312524269266238187717572642372313856478582416846431020258251821133513481320831542613613314751116121815151512896727013835912125823500518411305527010200014200011200000100000000010000000000010001000000000000000000100000000000000001000000000000000000
....................................................................................AATTGCACTAGTCCCGGC...............................................181159672526745324124182625323011910602915301791034150121713150209319201614110415101175380309641500151110127313090172212510002651110020000012210100000000000000000600000000002000000000200000010000000000000000000000000000000000000000000000
....................................................................................AATTGCACTAGTCCCGGCCTGCAA.........................................241112360523830214525811195013917171714190142702102102112808425402006226313193023492440420010011122011012001512101000000061117100300010000030004000100000000000022000000001101000000000000000000000000100000000000000000000000000000
....................................................................................AATTGCACTAGTCCCGGCC..............................................1911383109110105972025121379353991015368371601170066735427791814141631074464105146062256036242121005196033210313215001001306200001011001060030000300000000010000000000000000000000000000000000003000000000000000000000000000
.....................................................................................ATTGCACTAGTCCCGGCCTGC...........................................2111871275336251230424322512910121914102020713174478131589107411101755967461064162652378385334393530127080227271183326140211021010109310150131051540011000130000000102000010000000000000000100000000000100000000000000000000000000000
.....................................................................................ATTGCACTAGTCCCGGCC..............................................1818000100000001000000000100000000000000001000000000000000000000000002000001000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATTGCACTAGTCCCGGCCTGCAA.........................................23138231110101010420500000000004100030000000000000000030010000000000000000000000002000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATTGCACTAGTCCCGGCCTGCA..........................................2211823136222834041106712213400200013001000101010010010000000100010000001000012000110020100000000000100000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATTGCACTAGTCCCGGCCTG............................................20146038262921353942034878346125174021530111134120175302400240004102710155717003120212020001121102001100004200010020011000000000000000000000000000010000000000000000000010000000000100000000000000000000000000
.....................................................................................ATTGCACTAGTCCCGGCCT.............................................191875117791011030104401310000000100041002000000010030000000000303000130000000001000100000000001100000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTGCACTAGTCCCGGCCTGCA..........................................21129670400000002002200000000000000000000000000000000000000000000100000000000001000000000000000000000000000100000000200000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................TTGCACTAGTCCCGGCCTGCAA.........................................22124471610000000100100000000000000000010000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTGCACTAGTCCCGGCCTGC...........................................201242242052334368211014243115033410101072120041004220612112020112224002002104704004100000000300001001010120020080311000100100000101000000001000000000000000000000000000000002000000000000000000000000
......................................................................................TTGCACTAGTCCCGGCCT.............................................18113002000000000001000100000000000040000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTGCACTAGTCCCGGCCTG............................................19172140123053200404400105000010101330000002010000100120000101200002010001110001030000000000000100000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TGCACTAGTCCCGGCCTG............................................18124311511110010000000100000000000010000000000100000100010030000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TGCACTAGTCCCGGCCTGC...........................................19199192251432120011114005000100002010000001000011000001000010000100000000000100000000001010000002000010020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TGCACTAGTCCCGGCCTGCAAT........................................22120662600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TGCACTAGTCCCGGCCTGCAA.........................................2113000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TGCACTAGTCCCGGCCTGCA..........................................2012100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GCACTAGTCCCGGCCTGC...........................................1811312021122310011130013100320400015013100233100000000101101001030011010010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GCACTAGTCCCGGCCTGCA..........................................1911010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CACTAGTCCCGGCCTGCAA.........................................1912000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CACTAGTCCCGGCCTGCA..........................................1811000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................AATGAGTGTCGCAGTCGACGATCTAC.................2611000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CGACGATCTACACAGTGCAA........2011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                                     SizeBlastTotalOSS6 Drosophila OSS cell small RNA libraries, rep2 OSS2 Drosophila OSS cell small RNA libraries, rep1 OSS8 Drosophila OSS cell small RNA libraries, rep4 OSS7 Drosophila OSS cell small RNA libraries, rep3 V065 dcr-2[L811fsX], ovary, AGO1IPV063 CS,ovary,AGO1IPV097 CS ovaryV066 r2d2[1], ovary, AGO1IPV064 ago2[414], ovary, AGO1IPV098 dcr-2[L811fsX] ovaryV081 embryo 2-6hrV021 ML-DmD21 cellS10 2-6h #1 (8)SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb S13 6-10h #2 (11)S14 0-1hr #1 (A)V088 r2d2[1] ovary total RNA  S12 6-10h #1 (10)V033 CMEW1 Cl.8+ cellSRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 GSM379065 Zuc Heterozygote V089 ago2[414] ovary total RNA  SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 SRR014275 Ovary_rep1 LK_P SRR010959 Ago3 IP in heterozygotes GSM379060 SpnE Heterozygote GSM379058 GSM379052 Aub Heterozygote SRR014280 Ovary_rep1 w1118_P S9 0-1h #3 (7)GSM379066 Zuc Mutant SRR014277 Ovary_rep1 NA_P GSM379057 Krimp Mutant V028 CMEW1 Cl.8+ cellSRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 SRR014282 Ovary_rep1 wK_P GSM379051 Armi Mutant SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR010956 Piwi IP in Ago3 heterozygotes GSM379054 Flam Heterozygote GSM379062 Squ Mutant S33 KC-48 #2SRR010955 Aub IP in Ago3 heterozygotes GSM379064 Vasa Mutant SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 GSM379067 SpnE Mutant GSM379063 Vasa Heterozygote S11 2-6h #2 (9)GSM379050 Armi Heterozygote SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR014273 Ovary_rep1_Har_P SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM379056 Krimp Heterozygote GSM280083 dcr-2-/- ovaries (18-29nt) S28 0-2d pupaeS21 disk #2GSM379053 Aub Mutant GSM280085 WT testes (18-24nt) V001 IR-GSM379061 Squ Heterozygote S23 female body #2GSM280084 loqs-/- ovaries (18-29nt) GSM379059 SRR010954 Aub trans-heterozygotes, oxidized GSM343287 Drosophila Toll 10b mutant embryos V002 IR+S27 0-1d Pupae (w)S5 imaginal discGSM280082 WT ovaries (18-29nt) SRR010953 Aub heterozygotes, oxidized V011 Sg4GSM467729 WT S16 KC -48 #1S19 2-4day pupae #1S34 KC+48 #1GSM180331 early embryo (2-6) SRR031696_2152 GSM379055 Flam Mutant V075 ML-DmBG1-C1V082 embryo 14-24hrSRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb V076 ML-DmBG3-C2S4 female bodyGSM180330 very early embryo (0-1) GSM467730 r2d2 GSM180332 mid embryo (6-10) S29 male head #1SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR029633 total small RNAs from hen1 homozygous flies GSM180335 imaginal discs SRR010960 wt, oxidized V024 kc167 cellSRR031701 Total small RNAs from r2d2 heterozygous flies SRR031703 Total small RNAs from r2d2 homozygous flies SRR031692 Total small RNAs from Oregon R SRR031693_4 V018 Kc167 cellS17 3rd inster #1S22 female head #1SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR001338 IR non-beta-eliminated SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies GSM467731 loq SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies SRR010951 Ago3 heterozygotes, oxidized SRR031699 Total small RNAs from dcr-2 homozygous flies S7 12-24hr embryoV009 CMEL1V026 1182-4H cellS35 KC+48 #2S32 s2+48 #2V084 female, one daySRR010952 Ago3 trans-heterozygotes, oxidized S24 male body #2S18 3rd inster #2SRR032092 mock oxidized GSM180333 late embryo (12-24) S20 2-4day pupae#2V090 CS  male total RNA  S31 s2+48 #1S2 female headGSM180329 adult bodies (female bodies, male bodies) V010 MLDmD20c5SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies GSM180334 larvae: 1st instar and 3rd instars S8 S2-48,+48, KC-48, +48 mixSRR001345 ago2 non-beta-eliminated SRR001343 dcr-2 non-beta-eliminated V067 S2-NPS15 S2 -48 #1S30 s2-48 #2GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) V020 S2R+ cellGSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 S3 male bodyS25 1st instar #1V008 S2-DRSCGSM280088 S2cell (AGO1IP) V025 S2R+ cellSRR001664 homozygous dcr-2_untreated V083 male, one dayGSM180328 adult heads (female heads, male heads) SRR032094 ago2 knockdown SRR001341 WT_males non-beta-eliminated SRR029032 r2d2 knockdown SRR001339 WT_females non-beta-eliminated SRR001347 ago2 untreated V019 GM2 cellS1 male headSRR001349 heterozygous dcr-2_untreated GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM280087 S2cell (AGO2IP) GSM239051 S2 cells, beta-eliminated GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR001337 WT_females beta-eliminated SRR001344 dcr-2 beta-eliminated S26 1st instar #2GSM239052 S2 cells, non beta-eliminated SRR029028 untreated (mock) GSM180337 tissue culture cells (S2 only) GSM239050 fly heads, beta-eliminated GSM239041 fly heads, non beta-eliminated GSM280086 WT ovaries (AGO2IP) SRR029031 loqs-ORF knockdown SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023400 total RNA extracted from P19 cells SRR023407 RNA bound by NLS-P19 protein SRR001340 IR beta-eliminated SRR023399 RNA bound by P19 protein SRR029030 dcr-2 knockdown SRR032093 ago1 knockdown SRR001346 ago2 beta-eliminated SRR023197 RNA Library from S2 control cells SRR029033 lacZ knockdown GSM424740 S2 pKF63 stably transfected SRR023402 total RNA extracted from NLS-P19 cells GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries SRR001342 WT_males beta-eliminated GSM246084 D. melanogaster adult male heads 454 SRR032095 AGO1 IP dcr2 knockdown SRR029029 dcr-1 knockdown GSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownSRR001348 ago2 oxidized GSM424739 S2 parental
...................................................................................AAATTGCACTAGTCCCGGCC..............................................2011000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GCACTAGTCCCGGCCTGCAAT........................................2111000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000