Page generated on Fri Oct 15 12:01:48 2010

dme-mir-954



dme-mir-954

View dme-mir-954 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-954	136	10546	2	3	8677		1837	2	29	17	8677	1837

ATCTGCAGTGGACTCATGCACGTCTTACAAACACAAGATTTTCTGGGTGTTGCGTTGTGTGTACCTGTGTACAGGCGTATTCACATGCAACATCCCTTACATCTTGCTTGATTATACTCCGCCCGCCGTGCATTCC
...........................(((...((((((.....(((((((((((((.(((..((((....))))..))).)).))))))))))).....)))))).)))..........................-31.10
.........(((...(((((((.(.........((((((.....(((((((((((((.(((..((((....))))..))).)).))))))))))).....))))))...((......)).....).))))))))))-40.20
Sense strand

	Size	Blast	Total	S29 male head #1	V097 CS ovary	V098 dcr-2[L811fsX] ovary	SRR031696_2152	V021 ML-DmD21 cell	V089 ago2[414] ovary total RNA	V033 CMEW1 Cl.8+ cell	V090 CS  male total RNA	V009 CMEL1	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V081 embryo 2-6hr	SRR029633 total small RNAs from hen1 homozygous flies	S22 female head #1	V008 S2-DRSC	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V028 CMEW1 Cl.8+ cell	V083 male, one day	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S33 KC-48 #2	V011 Sg4	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR001338 IR non-beta-eliminated	V088 r2d2[1] ovary total RNA	SRR031703 Total small RNAs from r2d2 homozygous flies	S24 male body #2	SRR031692 Total small RNAs from Oregon R	V084 female, one day	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM379056 Krimp Heterozygote	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	S2 female head	S9 0-1h #3 (7)	SRR014275 Ovary_rep1 LK_P	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S27 0-1d Pupae (w)	S14 0-1hr #1 (A)	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V018 Kc167 cell	GSM379057 Krimp Mutant	V020 S2R+ cell	V064 ago2[414], ovary, AGO1IP	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM280085 WT testes (18-24nt)	S16 KC -48 #1	S28 0-2d pupae	GSM379064 Vasa Mutant	SRR001664 homozygous dcr-2_untreated	SRR001345 ago2 non-beta-eliminated	SRR014277 Ovary_rep1 NA_P	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR001349 heterozygous dcr-2_untreated	V063 CS,ovary,AGO1IP	GSM379063 Vasa Heterozygote	GSM379062 Squ Mutant	V076 ML-DmBG3-C2	SRR014282 Ovary_rep1 wK_P	S10 2-6h #1 (8)	SRR001347 ago2 untreated	S1 male head	GSM379066 Zuc Mutant	S12 6-10h #1 (10)	GSM379065 Zuc Heterozygote	V066 r2d2[1], ovary, AGO1IP	S19 2-4day pupae #1	S35 KC+48 #2	V075 ML-DmBG1-C1	V024 kc167 cell	SRR014273 Ovary_rep1_Har_P	SRR014280 Ovary_rep1 w1118_P	S13 6-10h #2 (11)	S34 KC+48 #1	GSM379052 Aub Heterozygote	V001 IR-	S23 female body #2	GSM379054 Flam Heterozygote	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031693_4	V082 embryo 14-24hr	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S32 s2+48 #2	GSM379050 Armi Heterozygote	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM343287 Drosophila Toll 10b mutant embryos	GSM379053 Aub Mutant	V025 S2R+ cell	V010 MLDmD20c5	V067 S2-NP	GSM379060 SpnE Heterozygote	S21 disk #2	GSM379051 Armi Mutant	GSM379058	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM467730 r2d2	OSS6 Drosophila OSS cell small RNA libraries, rep2	V002 IR+	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S30 s2-48 #2	GSM379061 Squ Heterozygote	GSM280082 WT ovaries (18-29nt)	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM180328 adult heads (female heads, male heads)	SRR001343 dcr-2 non-beta-eliminated	GSM280088 S2cell (AGO1IP)	SRR001344 dcr-2 beta-eliminated	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM467729 WT	SRR029030 dcr-2 knockdown	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR029028 untreated (mock)	OSS8 Drosophila OSS cell small RNA libraries, rep4	S5 imaginal disc	GSM379067 SpnE Mutant	S20 2-4day pupae#2	S18 3rd inster #2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S3 male body	S4 female body	S31 s2+48 #1	SRR032095 AGO1 IP dcr2 knockdown	S15 S2 -48 #1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S11 2-6h #2 (9)	GSM379059	S8 S2-48,+48, KC-48, +48 mix	GSM239041 fly heads, non beta-eliminated	V019 GM2 cell	GSM239050 fly heads, beta-eliminated	GSM239052 S2 cells, non beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	S17 3rd inster #1	GSM180333 late embryo (12-24)	S7 12-24hr embryo	GSM280084 loqs-/- ovaries (18-29nt)	GSM379055 Flam Mutant	SRR001348 ago2 oxidized	GSM280087 S2cell (AGO2IP)	SRR001337 WT_females beta-eliminated	SRR010954 Aub trans-heterozygotes, oxidized	SRR032096 AGO2 IP dcr2 knockdown	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM180335 imaginal discs	SRR023197 RNA Library from S2 control cells	GSM180337 tissue culture cells (S2 only)	V026 1182-4H cell	GSM180331 early embryo (2-6)	S25 1st instar #1	SRR029032 r2d2 knockdown	SRR032094 ago2 knockdown	SRR029031 loqs-ORF knockdown	SRR010956 Piwi IP in Ago3 heterozygotes	SRR001340 IR beta-eliminated	SRR001342 WT_males beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	SRR010959 Ago3 IP in heterozygotes	GSM180330 very early embryo (0-1)	SRR010955 Aub IP in Ago3 heterozygotes	SRR032093 ago1 knockdown	SRR010953 Aub heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	S26 1st instar #2	GSM239051 S2 cells, beta-eliminated	GSM180332 mid embryo (6-10)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR032092 mock oxidized	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	SRR029029 dcr-1 knockdown	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized
..............CATGCACGTCTTACAAAC........................................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CATGCACGTCTTACAAACACAAGATT................................................................................................	26	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACACAAGATTTTCTGGGTGT......................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACACAAGATTTTCTGGGTGTTG....................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTCTGGGTGTTGCGTTGTGTG...........................................................................	21	1	7	0	1	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTCTGGGTGTTGCGTTGTGTGT..........................................................................	22	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTCTGGGTGTTGCGTTGTGT............................................................................	20	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTCTGGGTGTTGCGTTGTGTGTA.........................................................................	23	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTCTGGGTGTTGCGTTGTG.............................................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TCTGGGTGTTGCGTTGTGTGTA.........................................................................	22	1	807	75	55	35	3	40	13	17	25	17	30	11	7	17	10	15	12	8	11	13	5	12	7	9	1	9	5	3	5	6	4	7	8	13	4	2	3	5	10	4	6	4	5	0	0	0	5	12	4	5	6	2	5	3	1	4	3	3	2	6	2	2	1	7	1	0	7	7	5	2	4	2	1	7	3	3	3	1	3	26	1	14	5	1	0	1	3	0	6	2	2	3	4	0	1	0	0	2	15	0	3	1	2	2	0	0	2	0	0	0	2	2	2	0	0	2	1	1	3	1	3	0	1	0	0	3	2	1	0	2	3	0	0	0	1	1	0	0	0	3	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TCTGGGTGTTGCGTTGTGTGTACCTGTGT..................................................................	29	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TCTGGGTGTTGCGTTGTGTGTACC.......................................................................	24	1	151	0	20	19	0	10	9	2	1	4	2	8	0	1	4	0	6	1	2	0	2	0	0	2	0	0	0	1	0	4	2	0	1	0	2	0	5	1	0	0	0	1	1	0	0	0	0	0	0	0	1	1	1	0	0	1	1	2	0	0	0	0	3	0	0	1	0	0	2	1	1	3	0	0	3	2	0	1	0	0	0	1	0	2	0	0	2	1	0	0	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................ATTCACATGCAACATCCCTTA.....................................	21	1	77	3	0	0	9	1	0	1	0	1	0	1	10	1	3	0	0	1	0	0	0	0	3	0	10	1	1	0	2	0	0	0	0	0	0	4	0	0	2	2	2	0	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	2	0	2	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATTCACATGCAACATCCCT.......................................	19	1	3	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATTCACATGCAACATCCC........................................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATTCACATGCAACATCCCTTACA...................................	23	1	35	0	2	0	3	0	0	0	0	0	2	1	4	0	0	0	0	0	1	0	0	2	0	1	0	0	0	0	2	0	0	1	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTCACATGCAACATCCCTTAC....................................	21	1	471	60	2	4	51	31	0	2	0	12	6	3	22	8	7	0	1	1	0	7	8	1	13	2	13	5	13	0	10	2	0	0	2	10	0	8	1	8	0	14	1	1	1	1	0	1	2	5	1	10	3	3	5	10	1	0	4	0	2	5	9	4	0	3	0	2	3	5	1	1	0	0	3	2	3	0	2	0	0	0	0	2	3	1	4	0	1	2	0	0	1	0	1	1	2	0	3	1	0	0	0	0	1	1	0	0	1	2	0	0	1	1	0	4	0	1	0	0	3	1	1	1	1	1	1	0	0	1	0	0	0	0	1	2	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTCACATGCAACATCCCT.......................................	18	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTCACATGCAACATCCCTTACA...................................	22	1	171	3	2	2	20	4	0	1	0	3	1	2	9	3	0	0	0	1	1	2	2	1	1	2	3	1	6	0	1	2	0	2	2	2	0	4	2	2	1	3	0	1	4	0	0	1	3	0	0	8	3	1	0	7	2	0	1	0	0	1	1	0	0	0	0	0	0	2	1	1	0	1	7	3	0	1	3	2	0	0	0	0	1	1	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	2	0	0	1	1	0	1	0	1	0	1	1	0	0	1	0	2	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTCACATGCAACATCCCTT......................................	19	1	20	0	0	0	7	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTCACATGCAACATCCCTTA.....................................	20	1	67	10	0	0	10	0	0	0	1	0	0	0	10	3	0	0	0	0	0	0	0	0	3	0	2	1	2	0	4	0	0	0	1	3	0	1	0	0	0	1	0	0	2	0	0	0	0	0	0	4	0	0	0	4	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCACATGCAACATCCCTTA.....................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCACATGCAACATCCCTTAC....................................	20	1	6	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCACATGCAACATCCCTTACA...................................	21	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ACATGCAACATCCCTTACA...................................	19	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ACATGCAACATCCCTTAC....................................	18	1	5	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CATCTTGCTTGATTATACTCCGC..............	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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Antisense strand

	Size	Blast	Total	S29 male head #1	V097 CS ovary	V098 dcr-2[L811fsX] ovary	SRR031696_2152	V021 ML-DmD21 cell	V089 ago2[414] ovary total RNA	V033 CMEW1 Cl.8+ cell	V090 CS  male total RNA	V009 CMEL1	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V081 embryo 2-6hr	SRR029633 total small RNAs from hen1 homozygous flies	S22 female head #1	V008 S2-DRSC	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V028 CMEW1 Cl.8+ cell	V083 male, one day	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S33 KC-48 #2	V011 Sg4	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR001338 IR non-beta-eliminated	V088 r2d2[1] ovary total RNA	SRR031703 Total small RNAs from r2d2 homozygous flies	S24 male body #2	SRR031692 Total small RNAs from Oregon R	V084 female, one day	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM379056 Krimp Heterozygote	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	S2 female head	S9 0-1h #3 (7)	SRR014275 Ovary_rep1 LK_P	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S27 0-1d Pupae (w)	S14 0-1hr #1 (A)	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V018 Kc167 cell	GSM379057 Krimp Mutant	V020 S2R+ cell	V064 ago2[414], ovary, AGO1IP	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM280085 WT testes (18-24nt)	S16 KC -48 #1	S28 0-2d pupae	GSM379064 Vasa Mutant	SRR001664 homozygous dcr-2_untreated	SRR001345 ago2 non-beta-eliminated	SRR014277 Ovary_rep1 NA_P	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR001349 heterozygous dcr-2_untreated	V063 CS,ovary,AGO1IP	GSM379063 Vasa Heterozygote	GSM379062 Squ Mutant	V076 ML-DmBG3-C2	SRR014282 Ovary_rep1 wK_P	S10 2-6h #1 (8)	SRR001347 ago2 untreated	S1 male head	GSM379066 Zuc Mutant	S12 6-10h #1 (10)	GSM379065 Zuc Heterozygote	V066 r2d2[1], ovary, AGO1IP	S19 2-4day pupae #1	S35 KC+48 #2	V075 ML-DmBG1-C1	V024 kc167 cell	SRR014273 Ovary_rep1_Har_P	SRR014280 Ovary_rep1 w1118_P	S13 6-10h #2 (11)	S34 KC+48 #1	GSM379052 Aub Heterozygote	V001 IR-	S23 female body #2	GSM379054 Flam Heterozygote	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031693_4	V082 embryo 14-24hr	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S32 s2+48 #2	GSM379050 Armi Heterozygote	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM343287 Drosophila Toll 10b mutant embryos	GSM379053 Aub Mutant	V025 S2R+ cell	V010 MLDmD20c5	V067 S2-NP	GSM379060 SpnE Heterozygote	S21 disk #2	GSM379051 Armi Mutant	GSM379058	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM467730 r2d2	OSS6 Drosophila OSS cell small RNA libraries, rep2	V002 IR+	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S30 s2-48 #2	GSM379061 Squ Heterozygote	GSM280082 WT ovaries (18-29nt)	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM180328 adult heads (female heads, male heads)	SRR001343 dcr-2 non-beta-eliminated	GSM280088 S2cell (AGO1IP)	SRR001344 dcr-2 beta-eliminated	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM467729 WT	SRR029030 dcr-2 knockdown	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR029028 untreated (mock)	OSS8 Drosophila OSS cell small RNA libraries, rep4	S5 imaginal disc	GSM379067 SpnE Mutant	S20 2-4day pupae#2	S18 3rd inster #2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S3 male body	S4 female body	S31 s2+48 #1	SRR032095 AGO1 IP dcr2 knockdown	S15 S2 -48 #1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S11 2-6h #2 (9)	GSM379059	S8 S2-48,+48, KC-48, +48 mix	GSM239041 fly heads, non beta-eliminated	V019 GM2 cell	GSM239050 fly heads, beta-eliminated	GSM239052 S2 cells, non beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	S17 3rd inster #1	GSM180333 late embryo (12-24)	S7 12-24hr embryo	GSM280084 loqs-/- ovaries (18-29nt)	GSM379055 Flam Mutant	SRR001348 ago2 oxidized	GSM280087 S2cell (AGO2IP)	SRR001337 WT_females beta-eliminated	SRR010954 Aub trans-heterozygotes, oxidized	SRR032096 AGO2 IP dcr2 knockdown	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM180335 imaginal discs	SRR023197 RNA Library from S2 control cells	GSM180337 tissue culture cells (S2 only)	V026 1182-4H cell	GSM180331 early embryo (2-6)	S25 1st instar #1	SRR029032 r2d2 knockdown	SRR032094 ago2 knockdown	SRR029031 loqs-ORF knockdown	SRR010956 Piwi IP in Ago3 heterozygotes	SRR001340 IR beta-eliminated	SRR001342 WT_males beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	SRR010959 Ago3 IP in heterozygotes	GSM180330 very early embryo (0-1)	SRR010955 Aub IP in Ago3 heterozygotes	SRR032093 ago1 knockdown	SRR010953 Aub heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	S26 1st instar #2	GSM239051 S2 cells, beta-eliminated	GSM180332 mid embryo (6-10)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR032092 mock oxidized	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	SRR029029 dcr-1 knockdown	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized
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