Page generated on Fri Oct 15 12:01:51 2010

dme-mir-955



dme-mir-955

View dme-mir-955 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-955	146	2536	1	8	2459		68	2		18	2459	68

GTAAAATAGGTAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATTTTATCTTAT
.............................(((..((((.(((.(((((.((((((((.((((((.....(......).....)))))))))))))).))))).))).))))..)))..............................-26.80
......(((((..((....(.....).)).((..((((.(((.(((((.((((((((.((((((.....(......).....)))))))))))))).))))).))).))))..)).........))))).................-31.90
Sense strand

	Size	Blast	Total	V082 embryo 14-24hr	V001 IR-	V002 IR+	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V083 male, one day	S7 12-24hr embryo	S28 0-2d pupae	S24 male body #2	V084 female, one day	V090 CS  male total RNA	V098 dcr-2[L811fsX] ovary	S29 male head #1	S27 0-1d Pupae (w)	V097 CS ovary	S22 female head #1	V089 ago2[414] ovary total RNA	S19 2-4day pupae #1	V021 ML-DmD21 cell	V081 embryo 2-6hr	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379066 Zuc Mutant	GSM180333 late embryo (12-24)	V063 CS,ovary,AGO1IP	V088 r2d2[1] ovary total RNA	SRR031703 Total small RNAs from r2d2 homozygous flies	S2 female head	GSM379067 SpnE Mutant	SRR031692 Total small RNAs from Oregon R	SRR031693_4	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001345 ago2 non-beta-eliminated	GSM379051 Armi Mutant	V064 ago2[414], ovary, AGO1IP	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379054 Flam Heterozygote	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM379061 Squ Heterozygote	GSM280085 WT testes (18-24nt)	S17 3rd inster #1	GSM379057 Krimp Mutant	S9 0-1h #3 (7)	GSM379063 Vasa Heterozygote	S18 3rd inster #2	SRR014275 Ovary_rep1 LK_P	GSM467729 WT	GSM239050 fly heads, beta-eliminated	V026 1182-4H cell	S20 2-4day pupae#2	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379058	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR029633 total small RNAs from hen1 homozygous flies	S23 female body #2	SRR014277 Ovary_rep1 NA_P	GSM467730 r2d2	SRR014282 Ovary_rep1 wK_P	S4 female body	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014280 Ovary_rep1 w1118_P	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR031696_2152	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM379059	S12 6-10h #1 (10)	V020 S2R+ cell	V066 r2d2[1], ovary, AGO1IP	SRR001343 dcr-2 non-beta-eliminated	GSM379064 Vasa Mutant	GSM379053 Aub Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S3 male body	S25 1st instar #1	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379060 SpnE Heterozygote	SRR001347 ago2 untreated	S26 1st instar #2	GSM379065 Zuc Heterozygote	S13 6-10h #2 (11)	GSM379056 Krimp Heterozygote	SRR014273 Ovary_rep1_Har_P	V028 CMEW1 Cl.8+ cell	GSM180329 adult bodies (female bodies, male bodies)	V008 S2-DRSC	GSM180332 mid embryo (6-10)	SRR001337 WT_females beta-eliminated	V076 ML-DmBG3-C2	GSM280084 loqs-/- ovaries (18-29nt)	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	S5 imaginal disc	SRR001344 dcr-2 beta-eliminated	V075 ML-DmBG1-C1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379062 Squ Mutant	SRR001664 homozygous dcr-2_untreated	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	SRR001338 IR non-beta-eliminated	V033 CMEW1 Cl.8+ cell	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	V018 Kc167 cell	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	S14 0-1hr #1 (A)	V009 CMEL1	S16 KC -48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	GSM180335 imaginal discs	GSM180328 adult heads (female heads, male heads)	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	S32 s2+48 #2	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	GSM379050 Armi Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	SRR001349 heterozygous dcr-2_untreated	V010 MLDmD20c5	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM379052 Aub Heterozygote	S34 KC+48 #1	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	S33 KC-48 #2	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	GSM280088 S2cell (AGO1IP)	SRR010959 Ago3 IP in heterozygotes	GSM180331 early embryo (2-6)	SRR029032 r2d2 knockdown	S8 S2-48,+48, KC-48, +48 mix	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	S21 disk #2	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S30 s2-48 #2	V011 Sg4	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM343287 Drosophila Toll 10b mutant embryos	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	SRR029030 dcr-2 knockdown	GSM239052 S2 cells, non beta-eliminated	S10 2-6h #1 (8)	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	V024 kc167 cell	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	S35 KC+48 #2
.......................TTGGCCAGCTAATCAACTC........................................................................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGGCCAGCTAATCAACTCC.......................................................................................................	19	1	4	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGGCCAGCTAATCAACTC........................................................................................................	18	1	3	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CATCGTGCAGAGGTTTGA......................................................................................	18	1	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CATCGTGCAGAGGTTTGAGTGTC.................................................................................	23	1	1256	504	271	127	44	7	28	21	17	2	9	1	23	9	7	14	2	9	8	10	8	2	6	0	0	0	6	2	4	5	5	0	0	3	1	1	3	0	2	0	5	4	6	3	5	1	0	6	5	3	0	2	1	0	2	3	0	2	3	4	1	0	4	2	0	1	1	4	2	1	0	1	0	3	2	1	3	3	2	0	0	1	2	0	1	0	1	0	1	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CATCGTGCAGAGGTTTGAGTGT..................................................................................	22	1	829	180	155	96	45	32	15	18	22	31	14	20	8	21	9	5	6	5	1	1	2	4	3	7	7	8	3	5	2	0	3	4	7	3	6	4	2	6	3	4	1	2	0	1	1	4	4	0	0	1	2	3	3	2	2	1	3	1	1	0	2	1	0	0	3	2	1	0	0	1	1	1	2	0	1	2	0	0	0	1	2	0	0	0	0	2	1	0	0	1	0	1	0	0	1	1	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CATCGTGCAGAGGTTTGAGTG...................................................................................	21	1	240	53	51	24	23	8	0	5	2	7	9	5	0	0	3	1	6	0	4	2	0	1	1	1	2	0	2	2	0	3	1	2	0	2	0	1	1	0	0	2	0	1	0	2	0	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	1	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CATCGTGCAGAGGTTTGAG.....................................................................................	19	1	21	0	0	0	3	2	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	1	0	2	0	2	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CATCGTGCAGAGGTTTGAGTGTCC................................................................................	24	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CATCGTGCAGAGGTTTGAGT....................................................................................	20	1	68	2	5	5	8	5	0	0	1	2	6	5	0	0	6	1	4	0	0	0	0	1	0	1	2	0	0	1	1	0	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	1	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATCGTGCAGAGGTTTGAGTG...................................................................................	20	1	7	0	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATCGTGCAGAGGTTTGAGTGT..................................................................................	21	1	11	4	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATCGTGCAGAGGTTTGAGTGTCCT...............................................................................	24	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATCGTGCAGAGGTTTGAGTGTCC................................................................................	23	1	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATCGTGCAGAGGTTTGAGTGTC.................................................................................	22	1	16	6	3	0	3	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TCGTGCAGAGGTTTGAGTGTCC................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GTGCAGAGGTTTGAGTGT..................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CATTCAATTTCTGAACGGTAGA.........................................	22	1	52	16	9	15	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CATTCAATTTCTGAACGGTAG..........................................	21	1	14	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	2	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CATTCAATTTCTGAACGGT............................................	19	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TTCAATTTCTGAACGGTAGAGA.......................................	22	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTAGAAACAACCTAAAAC.............	18	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V082 embryo 14-24hr	V001 IR-	V002 IR+	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V083 male, one day	S7 12-24hr embryo	S28 0-2d pupae	S24 male body #2	V084 female, one day	V090 CS  male total RNA	V098 dcr-2[L811fsX] ovary	S29 male head #1	S27 0-1d Pupae (w)	V097 CS ovary	S22 female head #1	V089 ago2[414] ovary total RNA	S19 2-4day pupae #1	V021 ML-DmD21 cell	V081 embryo 2-6hr	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379066 Zuc Mutant	GSM180333 late embryo (12-24)	V063 CS,ovary,AGO1IP	V088 r2d2[1] ovary total RNA	SRR031703 Total small RNAs from r2d2 homozygous flies	S2 female head	GSM379067 SpnE Mutant	SRR031692 Total small RNAs from Oregon R	SRR031693_4	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001345 ago2 non-beta-eliminated	GSM379051 Armi Mutant	V064 ago2[414], ovary, AGO1IP	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379054 Flam Heterozygote	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM379061 Squ Heterozygote	GSM280085 WT testes (18-24nt)	S17 3rd inster #1	GSM379057 Krimp Mutant	S9 0-1h #3 (7)	GSM379063 Vasa Heterozygote	S18 3rd inster #2	SRR014275 Ovary_rep1 LK_P	GSM467729 WT	GSM239050 fly heads, beta-eliminated	V026 1182-4H cell	S20 2-4day pupae#2	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379058	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR029633 total small RNAs from hen1 homozygous flies	S23 female body #2	SRR014277 Ovary_rep1 NA_P	GSM467730 r2d2	SRR014282 Ovary_rep1 wK_P	S4 female body	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014280 Ovary_rep1 w1118_P	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR031696_2152	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM379059	S12 6-10h #1 (10)	V020 S2R+ cell	V066 r2d2[1], ovary, AGO1IP	SRR001343 dcr-2 non-beta-eliminated	GSM379064 Vasa Mutant	GSM379053 Aub Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	S3 male body	S25 1st instar #1	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379060 SpnE Heterozygote	SRR001347 ago2 untreated	S26 1st instar #2	GSM379065 Zuc Heterozygote	S13 6-10h #2 (11)	GSM379056 Krimp Heterozygote	SRR014273 Ovary_rep1_Har_P	V028 CMEW1 Cl.8+ cell	GSM180329 adult bodies (female bodies, male bodies)	V008 S2-DRSC	GSM180332 mid embryo (6-10)	SRR001337 WT_females beta-eliminated	V076 ML-DmBG3-C2	GSM280084 loqs-/- ovaries (18-29nt)	GSM379055 Flam Mutant	SRR032095 AGO1 IP dcr2 knockdown	S5 imaginal disc	SRR001344 dcr-2 beta-eliminated	V075 ML-DmBG1-C1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379062 Squ Mutant	SRR001664 homozygous dcr-2_untreated	V067 S2-NP	GSM280082 WT ovaries (18-29nt)	SRR001338 IR non-beta-eliminated	V033 CMEW1 Cl.8+ cell	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	V018 Kc167 cell	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	S14 0-1hr #1 (A)	V009 CMEL1	S16 KC -48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	GSM180335 imaginal discs	GSM180328 adult heads (female heads, male heads)	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	S32 s2+48 #2	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	GSM379050 Armi Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	SRR001349 heterozygous dcr-2_untreated	V010 MLDmD20c5	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR010954 Aub trans-heterozygotes, oxidized	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM379052 Aub Heterozygote	S34 KC+48 #1	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	S33 KC-48 #2	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	GSM280088 S2cell (AGO1IP)	SRR010959 Ago3 IP in heterozygotes	GSM180331 early embryo (2-6)	SRR029032 r2d2 knockdown	S8 S2-48,+48, KC-48, +48 mix	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	S21 disk #2	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S30 s2-48 #2	V011 Sg4	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM343287 Drosophila Toll 10b mutant embryos	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	SRR029030 dcr-2 knockdown	GSM239052 S2 cells, non beta-eliminated	S10 2-6h #1 (8)	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	V024 kc167 cell	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	S35 KC+48 #2
..............................................................................................................TACGCTTAGAAACAACCTA.................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0