Page generated on Fri Oct 15 12:01:47 2010

dme-mir-960



dme-mir-960

View dme-mir-960 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-960	142	12857	2	2	10860		1990	1	6	18	10860	1990

CTGCAATGATTATCGTACCGCCCACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGATTCACCTAATAGAATCCGTAG
..........................(((((.((((((..((..((((.((((((((((.(((((..((......))..))))).)))))))))).))))..))..)))))).)))))........................-32.80
((((..(((((......(((....))).....((((((..((..((((.((((((((((.(((((..((......))..))))).)))))))))).))))..))..))))))..)))))(((((........))))).))))-41.00
Sense strand

	Size	Blast	Total	GSM280085 WT testes (18-24nt)	V090 CS  male total RNA	V083 male, one day	V097 CS ovary	S21 disk #2	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S5 imaginal disc	V063 CS,ovary,AGO1IP	S24 male body #2	SRR014275 Ovary_rep1 LK_P	SRR014277 Ovary_rep1 NA_P	GSM379057 Krimp Mutant	S9 0-1h #3 (7)	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V098 dcr-2[L811fsX] ovary	SRR031697 Total small RNAs from dcr-2 heterozygous flies	GSM379061 Squ Heterozygote	GSM379056 Krimp Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379051 Armi Mutant	GSM379063 Vasa Heterozygote	GSM379065 Zuc Heterozygote	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	S28 0-2d pupae	GSM180335 imaginal discs	GSM379064 Vasa Mutant	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V064 ago2[414], ovary, AGO1IP	GSM379066 Zuc Mutant	S32 s2+48 #2	S19 2-4day pupae #1	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014273 Ovary_rep1_Har_P	V089 ago2[414] ovary total RNA	GSM379060 SpnE Heterozygote	GSM379059	V084 female, one day	GSM379058	GSM379052 Aub Heterozygote	SRR032095 AGO1 IP dcr2 knockdown	SRR031696_2152	S29 male head #1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V082 embryo 14-24hr	S3 male body	SRR014280 Ovary_rep1 w1118_P	S35 KC+48 #2	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM379053 Aub Mutant	SRR014282 Ovary_rep1 wK_P	GSM280084 loqs-/- ovaries (18-29nt)	GSM379067 SpnE Mutant	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM379062 Squ Mutant	S27 0-1d Pupae (w)	V066 r2d2[1], ovary, AGO1IP	SRR031703 Total small RNAs from r2d2 homozygous flies	GSM379054 Flam Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM379050 Armi Heterozygote	SRR010960 wt, oxidized	SRR029029 dcr-1 knockdown	SRR029030 dcr-2 knockdown	OSS6 Drosophila OSS cell small RNA libraries, rep2	V088 r2d2[1] ovary total RNA	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031692 Total small RNAs from Oregon R	GSM379055 Flam Mutant	S23 female body #2	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	S34 KC+48 #1	S12 6-10h #1 (10)	SRR001349 heterozygous dcr-2_untreated	V010 MLDmD20c5	GSM467729 WT	GSM280082 WT ovaries (18-29nt)	S17 3rd inster #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	S22 female head #1	SRR010951 Ago3 heterozygotes, oxidized	S13 6-10h #2 (11)	SRR029033 lacZ knockdown	V001 IR-	V081 embryo 2-6hr	SRR029633 total small RNAs from hen1 homozygous flies	SRR029031 loqs-ORF knockdown	SRR031693_4	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR032096 AGO2 IP dcr2 knockdown	S20 2-4day pupae#2	S10 2-6h #1 (8)	GSM180329 adult bodies (female bodies, male bodies)	S4 female body	S8 S2-48,+48, KC-48, +48 mix	S2 female head	GSM280083 dcr-2-/- ovaries (18-29nt)	S18 3rd inster #2	GSM467731 loq	V026 1182-4H cell	SRR029032 r2d2 knockdown	S30 s2-48 #2	V067 S2-NP	SRR029028 untreated (mock)	S11 2-6h #2 (9)	V002 IR+	GSM180328 adult heads (female heads, male heads)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	V011 Sg4	SRR001664 homozygous dcr-2_untreated	GSM467730 r2d2	GSM280087 S2cell (AGO2IP)	SRR001347 ago2 untreated	SRR001345 ago2 non-beta-eliminated	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM180334 larvae: 1st instar and 3rd instars	GSM280088 S2cell (AGO1IP)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR032093 ago1 knockdown	SRR010953 Aub heterozygotes, oxidized	S16 KC -48 #1	S31 s2+48 #1	SRR001337 WT_females beta-eliminated	SRR010954 Aub trans-heterozygotes, oxidized	V020 S2R+ cell	GSM246084 D. melanogaster adult male heads 454	GSM180331 early embryo (2-6)	S25 1st instar #1	V075 ML-DmBG1-C1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM280086 WT ovaries (AGO2IP)	S26 1st instar #2	V008 S2-DRSC	GSM180333 late embryo (12-24)	V018 Kc167 cell	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	V009 CMEL1	SRR001341 WT_males non-beta-eliminated	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S7 12-24hr embryo	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V076 ML-DmBG3-C2	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	S33 KC-48 #2	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	V028 CMEW1 Cl.8+ cell	SRR010959 Ago3 IP in heterozygotes	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	V021 ML-DmD21 cell	SRR001344 dcr-2 beta-eliminated	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V025 S2R+ cell	GSM343287 Drosophila Toll 10b mutant embryos	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	SRR001338 IR non-beta-eliminated	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	V024 kc167 cell	V033 CMEW1 Cl.8+ cell	SRR001346 ago2 beta-eliminated
.......................ACGGGTTTTGTACCACATTC...................................................................................................	20	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GGGTTTTGTACCACATTCTG.................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ATTCTGAGTATTCCAGATTGCA.................................................................................	22	1	2	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ATTCTGAGTATTCCAGATTGC..................................................................................	21	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTCTGAGTATTCCAGATTGC..................................................................................	20	1	4	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTCTGAGTATTCCAGATTGCATA...............................................................................	23	1	6	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTCTGAGTATTCCAGATTGCA.................................................................................	21	1	4	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTCTGAGTATTCCAGATT....................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTCTGAGTATTCCAGATTGCAT................................................................................	22	1	65	7	1	2	1	2	8	3	3	0	3	0	3	0	0	0	2	2	3	2	0	0	1	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	8	0	1	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TCTGAGTATTCCAGATTGCAT................................................................................	21	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CTGAGTATTCCAGATTGCATAGC.............................................................................	23	1	4	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CTGAGTATTCCAGATTGCATAG..............................................................................	22	1	8	4	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGAGTATTCCAGATTGCATAG..............................................................................	21	1	4699	2526	411	549	107	61	85	36	116	78	28	33	24	46	25	17	49	11	17	8	8	16	8	20	11	1	13	11	23	13	5	2	17	8	12	7	5	16	4	6	5	11	20	8	5	14	5	12	2	4	9	3	1	2	6	0	12	9	2	0	3	0	0	16	1	6	5	10	2	3	11	7	4	0	9	2	5	2	1	0	5	0	0	6	1	1	4	3	1	2	0	1	2	2	0	0	2	2	1	1	2	4	0	0	1	0	0	0	0	1	2	0	0	1	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................GAGTATTCCAGATTGCATAGCT............................................................................	22	1	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GAGTATTCCAGATTGCATAGC.............................................................................	21	1	10	3	0	1	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................TACGGTCTGGGACACTTTTAAC.....................................	22	1	412	46	43	11	29	15	57	33	24	33	8	3	4	9	4	14	3	0	4	3	1	1	2	0	3	3	1	0	4	3	0	0	2	2	2	1	2	1	0	0	3	5	0	0	0	2	0	0	4	0	1	1	2	3	3	1	3	0	0	0	0	0	0	0	2	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TACGGTCTGGGACACTTTTAA......................................	21	1	115	30	8	4	4	6	17	4	4	5	0	0	2	0	1	4	2	0	0	1	0	0	0	0	1	2	1	0	0	0	0	0	1	1	0	0	0	1	1	0	0	0	1	4	0	1	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TACGGTCTGGGACACTTTTAACA....................................	23	1	514	53	69	13	33	33	81	37	27	20	7	1	1	5	6	8	3	3	1	6	3	3	2	0	11	2	2	1	1	2	2	1	5	2	0	2	0	1	1	0	1	5	4	2	1	0	2	2	6	0	3	0	1	2	0	8	4	6	0	0	0	0	0	0	3	1	0	1	0	0	0	1	0	2	2	0	0	0	1	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TACGGTCTGGGACACTTTTAACAT...................................	24	1	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TACGGTCTGGGACACTTTTA.......................................	20	1	31	4	1	0	5	1	6	0	0	1	0	0	0	3	0	2	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TACGGTCTGGGACACTTTT........................................	19	1	17	3	0	0	2	1	0	1	0	1	0	0	0	0	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................ACGGTCTGGGACACTTTTAACA....................................	22	1	4	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................ACGGTCTGGGACACTTTTAAC.....................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................ACGGTCTGGGACACTTTTAA......................................	20	1	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CGGTCTGGGACACTTTTAA......................................	19	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CGGTCTGGGACACTTTTA.......................................	18	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	GSM280085 WT testes (18-24nt)	V090 CS  male total RNA	V083 male, one day	V097 CS ovary	S21 disk #2	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S5 imaginal disc	V063 CS,ovary,AGO1IP	S24 male body #2	SRR014275 Ovary_rep1 LK_P	SRR014277 Ovary_rep1 NA_P	GSM379057 Krimp Mutant	S9 0-1h #3 (7)	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V098 dcr-2[L811fsX] ovary	SRR031697 Total small RNAs from dcr-2 heterozygous flies	GSM379061 Squ Heterozygote	GSM379056 Krimp Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379051 Armi Mutant	GSM379063 Vasa Heterozygote	GSM379065 Zuc Heterozygote	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	S28 0-2d pupae	GSM180335 imaginal discs	GSM379064 Vasa Mutant	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V064 ago2[414], ovary, AGO1IP	GSM379066 Zuc Mutant	S32 s2+48 #2	S19 2-4day pupae #1	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014273 Ovary_rep1_Har_P	V089 ago2[414] ovary total RNA	GSM379060 SpnE Heterozygote	GSM379059	V084 female, one day	GSM379058	GSM379052 Aub Heterozygote	SRR032095 AGO1 IP dcr2 knockdown	SRR031696_2152	S29 male head #1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V082 embryo 14-24hr	S3 male body	SRR014280 Ovary_rep1 w1118_P	S35 KC+48 #2	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM379053 Aub Mutant	SRR014282 Ovary_rep1 wK_P	GSM280084 loqs-/- ovaries (18-29nt)	GSM379067 SpnE Mutant	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM379062 Squ Mutant	S27 0-1d Pupae (w)	V066 r2d2[1], ovary, AGO1IP	SRR031703 Total small RNAs from r2d2 homozygous flies	GSM379054 Flam Heterozygote	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM379050 Armi Heterozygote	SRR010960 wt, oxidized	SRR029029 dcr-1 knockdown	SRR029030 dcr-2 knockdown	OSS6 Drosophila OSS cell small RNA libraries, rep2	V088 r2d2[1] ovary total RNA	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031692 Total small RNAs from Oregon R	GSM379055 Flam Mutant	S23 female body #2	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	S34 KC+48 #1	S12 6-10h #1 (10)	SRR001349 heterozygous dcr-2_untreated	V010 MLDmD20c5	GSM467729 WT	GSM280082 WT ovaries (18-29nt)	S17 3rd inster #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	S22 female head #1	SRR010951 Ago3 heterozygotes, oxidized	S13 6-10h #2 (11)	SRR029033 lacZ knockdown	V001 IR-	V081 embryo 2-6hr	SRR029633 total small RNAs from hen1 homozygous flies	SRR029031 loqs-ORF knockdown	SRR031693_4	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR032096 AGO2 IP dcr2 knockdown	S20 2-4day pupae#2	S10 2-6h #1 (8)	GSM180329 adult bodies (female bodies, male bodies)	S4 female body	S8 S2-48,+48, KC-48, +48 mix	S2 female head	GSM280083 dcr-2-/- ovaries (18-29nt)	S18 3rd inster #2	GSM467731 loq	V026 1182-4H cell	SRR029032 r2d2 knockdown	S30 s2-48 #2	V067 S2-NP	SRR029028 untreated (mock)	S11 2-6h #2 (9)	V002 IR+	GSM180328 adult heads (female heads, male heads)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	V011 Sg4	SRR001664 homozygous dcr-2_untreated	GSM467730 r2d2	GSM280087 S2cell (AGO2IP)	SRR001347 ago2 untreated	SRR001345 ago2 non-beta-eliminated	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM180334 larvae: 1st instar and 3rd instars	GSM280088 S2cell (AGO1IP)	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR032093 ago1 knockdown	SRR010953 Aub heterozygotes, oxidized	S16 KC -48 #1	S31 s2+48 #1	SRR001337 WT_females beta-eliminated	SRR010954 Aub trans-heterozygotes, oxidized	V020 S2R+ cell	GSM246084 D. melanogaster adult male heads 454	GSM180331 early embryo (2-6)	S25 1st instar #1	V075 ML-DmBG1-C1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM280086 WT ovaries (AGO2IP)	S26 1st instar #2	V008 S2-DRSC	GSM180333 late embryo (12-24)	V018 Kc167 cell	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	V009 CMEL1	SRR001341 WT_males non-beta-eliminated	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S7 12-24hr embryo	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V076 ML-DmBG3-C2	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	S33 KC-48 #2	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	V028 CMEW1 Cl.8+ cell	SRR010959 Ago3 IP in heterozygotes	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	V021 ML-DmD21 cell	SRR001344 dcr-2 beta-eliminated	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V025 S2R+ cell	GSM343287 Drosophila Toll 10b mutant embryos	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	SRR001338 IR non-beta-eliminated	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	V024 kc167 cell	V033 CMEW1 Cl.8+ cell	SRR001346 ago2 beta-eliminated
.............................................................................TTGCTATACGGTCTGGGACACT...........................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................ATCAAATCAGATTCACCTAATA..........	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0