Page generated on Fri Oct 15 12:01:47 2010

dme-mir-962



dme-mir-962

View dme-mir-962 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-962	141	16543		15	15989		539			12	15989	539

GACTCGACTTGAATTCAACTACTTCGATGGGGCACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTATTCAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCCCATGCAACAGTGATAGTAGTGATAAAA
............................((((((..((((....(((((((.((((((((....((((.........)))).)))))))).)))))))....))))..))))))...........................-33.60
..............(((.((((((((..((((((..((((....(((((((.((((((((....((((.........)))).)))))))).)))))))....))))..))))))..........))).)))))))).....-39.30
Sense strand

	Size	Blast	Total	V097 CS ovary	V083 male, one day	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V090 CS  male total RNA	SRR014275 Ovary_rep1 LK_P	V098 dcr-2[L811fsX] ovary	GSM379061 Squ Heterozygote	SRR014277 Ovary_rep1 NA_P	V063 CS,ovary,AGO1IP	GSM280085 WT testes (18-24nt)	GSM379057 Krimp Mutant	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379051 Armi Mutant	S21 disk #2	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379065 Zuc Heterozygote	GSM379063 Vasa Heterozygote	GSM379066 Zuc Mutant	V084 female, one day	S5 imaginal disc	SRR014273 Ovary_rep1_Har_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379055 Flam Mutant	V082 embryo 14-24hr	V089 ago2[414] ovary total RNA	SRR014280 Ovary_rep1 w1118_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379054 Flam Heterozygote	SRR014282 Ovary_rep1 wK_P	GSM379058	S24 male body #2	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM379062 Squ Mutant	GSM379050 Armi Heterozygote	GSM379064 Vasa Mutant	GSM379060 SpnE Heterozygote	V088 r2d2[1] ovary total RNA	GSM379067 SpnE Mutant	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM379052 Aub Heterozygote	GSM379056 Krimp Heterozygote	GSM379053 Aub Mutant	V064 ago2[414], ovary, AGO1IP	SRR032095 AGO1 IP dcr2 knockdown	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V081 embryo 2-6hr	GSM180335 imaginal discs	GSM379059	S9 0-1h #3 (7)	GSM280082 WT ovaries (18-29nt)	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR029033 lacZ knockdown	V066 r2d2[1], ovary, AGO1IP	S19 2-4day pupae #1	SRR029031 loqs-ORF knockdown	SRR029028 untreated (mock)	SRR031696_2152	S29 male head #1	S28 0-2d pupae	S32 s2+48 #2	V001 IR-	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR032096 AGO2 IP dcr2 knockdown	GSM180329 adult bodies (female bodies, male bodies)	V002 IR+	S23 female body #2	V010 MLDmD20c5	S34 KC+48 #1	S3 male body	S27 0-1d Pupae (w)	SRR029030 dcr-2 knockdown	S12 6-10h #1 (10)	GSM280084 loqs-/- ovaries (18-29nt)	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR032093 ago1 knockdown	SRR031692 Total small RNAs from Oregon R	SRR031701 Total small RNAs from r2d2 heterozygous flies	S10 2-6h #1 (8)	OSS8 Drosophila OSS cell small RNA libraries, rep4	S4 female body	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR010959 Ago3 IP in heterozygotes	OSS7 Drosophila OSS cell small RNA libraries, rep3	S35 KC+48 #2	SRR029633 total small RNAs from hen1 homozygous flies	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR010956 Piwi IP in Ago3 heterozygotes	V026 1182-4H cell	S8 S2-48,+48, KC-48, +48 mix	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM280083 dcr-2-/- ovaries (18-29nt)	S13 6-10h #2 (11)	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010960 wt, oxidized	GSM467729 WT	S22 female head #1	V009 CMEL1	SRR031693_4	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010954 Aub trans-heterozygotes, oxidized	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V028 CMEW1 Cl.8+ cell	SRR029032 r2d2 knockdown	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR001338 IR non-beta-eliminated	S2 female head	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	GSM180333 late embryo (12-24)	SRR031699 Total small RNAs from dcr-2 homozygous flies	V076 ML-DmBG3-C2	SRR001343 dcr-2 non-beta-eliminated	S1 male head	GSM180334 larvae: 1st instar and 3rd instars	V033 CMEW1 Cl.8+ cell	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	S26 1st instar #2	V008 S2-DRSC	S11 2-6h #2 (9)	V018 Kc167 cell	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	S16 KC -48 #1	SRR001341 WT_males non-beta-eliminated	GSM180328 adult heads (female heads, male heads)	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S7 12-24hr embryo	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR001349 heterozygous dcr-2_untreated	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR001345 ago2 non-beta-eliminated	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	S18 3rd inster #2	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	S33 KC-48 #2	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR029029 dcr-1 knockdown	GSM280088 S2cell (AGO1IP)	GSM180331 early embryo (2-6)	S25 1st instar #1	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	V021 ML-DmD21 cell	SRR001344 dcr-2 beta-eliminated	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	V075 ML-DmBG1-C1	S30 s2-48 #2	V011 Sg4	V025 S2R+ cell	S20 2-4day pupae#2	SRR001664 homozygous dcr-2_untreated	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM343287 Drosophila Toll 10b mutant embryos	V067 S2-NP	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	V024 kc167 cell	SRR001346 ago2 beta-eliminated	S17 3rd inster #1
...................TACTTCGATGGGGCACTCAGGCT...................................................................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACTTCGATGGGGCACTCAGGCT...................................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CTTCGATGGGGCACTCAGGCT...................................................................................................	21	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTCGATGGGGCACTCAGGCT...................................................................................................	20	1	3	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TCGATGGGGCACTCAGGCT...................................................................................................	19	1	7	1	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TCGATGGGGCACTCAGGCTA..................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ATAAGGTAGAGAAATTGATGC..............................................................................	21	1	283	58	34	25	7	9	12	8	5	8	41	14	6	5	2	3	9	1	0	6	0	2	2	2	1	5	0	1	1	0	0	1	0	1	1	0	0	0	1	0	0	1	1	0	1	0	0	1	1	0	0	0	0	0	1	0	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ATAAGGTAGAGAAATTGATG...............................................................................	20	1	278	31	42	32	16	2	6	12	4	2	74	12	3	0	2	2	7	4	2	2	1	1	0	2	1	1	0	0	2	0	1	1	0	1	2	1	0	1	0	0	1	0	0	1	2	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ATAAGGTAGAGAAATTGATGCTGTCT.........................................................................	26	1	2500	641	312	105	158	113	157	104	68	143	0	30	56	55	21	32	16	22	33	26	12	18	21	20	42	37	11	16	13	13	20	0	0	17	15	8	12	18	16	6	10	9	13	10	0	2	7	4	0	0	2	3	0	12	1	0	0	0	0	3	0	1	1	0	0	1	0	2	0	0	0	0	0	3	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ATAAGGTAGAGAAATTGATGCTG............................................................................	23	1	2114	383	239	196	161	83	92	94	62	59	24	71	70	49	12	29	27	25	22	22	6	27	27	32	14	11	18	16	14	16	14	3	6	10	12	15	8	2	8	7	10	8	7	11	13	6	3	4	12	0	3	4	4	4	3	4	4	1	4	0	0	0	0	5	2	0	0	0	0	2	0	0	0	1	4	0	0	0	2	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ATAAGGTAGAGAAATTGAT................................................................................	19	1	70	1	15	0	3	0	0	1	0	0	42	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ATAAGGTAGAGAAATTGATGCT.............................................................................	22	1	572	130	64	22	14	15	31	21	16	20	29	29	12	14	2	9	12	6	7	10	3	4	3	5	3	6	5	7	2	7	4	2	1	0	3	10	0	3	2	5	1	4	4	2	4	1	1	0	3	0	1	0	0	1	0	0	0	4	0	0	1	0	0	3	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ATAAGGTAGAGAAATTGATGCTGTC..........................................................................	25	1	8270	1505	1132	1057	563	390	243	279	312	155	0	158	206	170	138	203	115	93	85	75	45	75	74	60	48	37	73	47	49	50	36	23	64	41	43	35	44	28	25	20	33	35	30	16	14	41	35	20	20	7	22	13	15	2	9	2	14	1	9	2	8	9	7	0	5	6	2	6	5	1	4	3	3	3	1	7	2	4	2	2	3	1	2	1	5	2	2	2	4	0	3	2	4	2	3	3	1	0	0	1	1	1	1	0	0	0	0	0	0	2	2	1	0	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................AGAGAAATTGATGCTGTC..........................................................................	18	1	3	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTTCAGTTTCATTACCT............................................	18	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTTCAGTTTCATTACCTTTCA........................................	22	1	277	0	1	8	0	3	0	2	2	6	97	1	4	2	36	0	1	1	1	0	21	0	0	0	0	0	0	0	0	0	0	30	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	6	0	10	0	4	0	0	6	0	0	4	0	0	0	0	0	0	1	0	0	0	1	2	2	0	0	0	0	0	2	0	1	0	3	2	2	2	0	2	1	1	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTTCAGTTTCATTACCTTTC.........................................	21	1	31	0	0	0	1	0	0	0	1	1	17	0	0	0	3	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTTCAGTTTCATTACCTTTCAA.......................................	23	1	35	0	0	0	0	0	0	0	0	0	9	0	0	0	7	0	0	0	0	0	4	0	0	0	0	0	3	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACTTCAGTTTCATTACCTTT..........................................	20	1	5	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CTTCAGTTTCATTACCTTTC.........................................	20	1	3	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CTTCAGTTTCATTACCTTTCAAT......................................	23	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CTTCAGTTTCATTACCTTTCAA.......................................	22	1	107	2	1	3	0	1	0	0	0	1	67	0	0	0	5	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	6	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CTTCAGTTTCATTACCTTTCA........................................	21	1	77	0	0	1	1	0	1	0	0	0	62	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TTCAGTTTCATTACCTTTCAA.......................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TCAGTTTCATTACCTTTCAA.......................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V097 CS ovary	V083 male, one day	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V090 CS  male total RNA	SRR014275 Ovary_rep1 LK_P	V098 dcr-2[L811fsX] ovary	GSM379061 Squ Heterozygote	SRR014277 Ovary_rep1 NA_P	V063 CS,ovary,AGO1IP	GSM280085 WT testes (18-24nt)	GSM379057 Krimp Mutant	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379051 Armi Mutant	S21 disk #2	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379065 Zuc Heterozygote	GSM379063 Vasa Heterozygote	GSM379066 Zuc Mutant	V084 female, one day	S5 imaginal disc	SRR014273 Ovary_rep1_Har_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379055 Flam Mutant	V082 embryo 14-24hr	V089 ago2[414] ovary total RNA	SRR014280 Ovary_rep1 w1118_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379054 Flam Heterozygote	SRR014282 Ovary_rep1 wK_P	GSM379058	S24 male body #2	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM379062 Squ Mutant	GSM379050 Armi Heterozygote	GSM379064 Vasa Mutant	GSM379060 SpnE Heterozygote	V088 r2d2[1] ovary total RNA	GSM379067 SpnE Mutant	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM379052 Aub Heterozygote	GSM379056 Krimp Heterozygote	GSM379053 Aub Mutant	V064 ago2[414], ovary, AGO1IP	SRR032095 AGO1 IP dcr2 knockdown	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V081 embryo 2-6hr	GSM180335 imaginal discs	GSM379059	S9 0-1h #3 (7)	GSM280082 WT ovaries (18-29nt)	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR029033 lacZ knockdown	V066 r2d2[1], ovary, AGO1IP	S19 2-4day pupae #1	SRR029031 loqs-ORF knockdown	SRR029028 untreated (mock)	SRR031696_2152	S29 male head #1	S28 0-2d pupae	S32 s2+48 #2	V001 IR-	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR032096 AGO2 IP dcr2 knockdown	GSM180329 adult bodies (female bodies, male bodies)	V002 IR+	S23 female body #2	V010 MLDmD20c5	S34 KC+48 #1	S3 male body	S27 0-1d Pupae (w)	SRR029030 dcr-2 knockdown	S12 6-10h #1 (10)	GSM280084 loqs-/- ovaries (18-29nt)	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR032093 ago1 knockdown	SRR031692 Total small RNAs from Oregon R	SRR031701 Total small RNAs from r2d2 heterozygous flies	S10 2-6h #1 (8)	OSS8 Drosophila OSS cell small RNA libraries, rep4	S4 female body	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR010959 Ago3 IP in heterozygotes	OSS7 Drosophila OSS cell small RNA libraries, rep3	S35 KC+48 #2	SRR029633 total small RNAs from hen1 homozygous flies	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR010956 Piwi IP in Ago3 heterozygotes	V026 1182-4H cell	S8 S2-48,+48, KC-48, +48 mix	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM280083 dcr-2-/- ovaries (18-29nt)	S13 6-10h #2 (11)	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010960 wt, oxidized	GSM467729 WT	S22 female head #1	V009 CMEL1	SRR031693_4	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010954 Aub trans-heterozygotes, oxidized	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V028 CMEW1 Cl.8+ cell	SRR029032 r2d2 knockdown	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR001338 IR non-beta-eliminated	S2 female head	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	GSM180333 late embryo (12-24)	SRR031699 Total small RNAs from dcr-2 homozygous flies	V076 ML-DmBG3-C2	SRR001343 dcr-2 non-beta-eliminated	S1 male head	GSM180334 larvae: 1st instar and 3rd instars	V033 CMEW1 Cl.8+ cell	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	S26 1st instar #2	V008 S2-DRSC	S11 2-6h #2 (9)	V018 Kc167 cell	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	S16 KC -48 #1	SRR001341 WT_males non-beta-eliminated	GSM180328 adult heads (female heads, male heads)	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S7 12-24hr embryo	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR001349 heterozygous dcr-2_untreated	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR001345 ago2 non-beta-eliminated	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	S18 3rd inster #2	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	S33 KC-48 #2	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR029029 dcr-1 knockdown	GSM280088 S2cell (AGO1IP)	GSM180331 early embryo (2-6)	S25 1st instar #1	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	V021 ML-DmD21 cell	SRR001344 dcr-2 beta-eliminated	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	V075 ML-DmBG1-C1	S30 s2-48 #2	V011 Sg4	V025 S2R+ cell	S20 2-4day pupae#2	SRR001664 homozygous dcr-2_untreated	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM343287 Drosophila Toll 10b mutant embryos	V067 S2-NP	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	V024 kc167 cell	SRR001346 ago2 beta-eliminated	S17 3rd inster #1