Page generated on Fri Oct 15 12:01:38 2010

dme-mir-965



dme-mir-965

View dme-mir-965 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-965	156	103208	1	12	11234	723	91227	5	8	19	91227	11234

TCAAAATAATAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTCATTCATAGAG
........................(.(((((..(((((((.((((((((((.(((((((((((((.((((.................))))))))))))).))))))))))))))))).))))))))))...........................-36.43
....................((((..(((((..(((((((.((((((((((.(((((((((((((.((((.................))))))))))))).))))))))))))))))).)))))))))....(((((....))))).....)))).-39.43
Sense strand

	Size	Blast	Total	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	V010 MLDmD20c5	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR029633 total small RNAs from hen1 homozygous flies	V020 S2R+ cell	V024 kc167 cell	SRR031692 Total small RNAs from Oregon R	S32 s2+48 #2	SRR031696_2152	V076 ML-DmBG3-C2	V018 Kc167 cell	S33 KC-48 #2	SRR001349 heterozygous dcr-2_untreated	V011 Sg4	V026 1182-4H cell	SRR031701 Total small RNAs from r2d2 heterozygous flies	S30 s2-48 #2	V009 CMEL1	SRR001347 ago2 untreated	SRR031703 Total small RNAs from r2d2 homozygous flies	S31 s2+48 #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V008 S2-DRSC	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001338 IR non-beta-eliminated	S29 male head #1	V075 ML-DmBG1-C1	V081 embryo 2-6hr	SRR001664 homozygous dcr-2_untreated	S13 6-10h #2 (11)	V025 S2R+ cell	S12 6-10h #1 (10)	V021 ML-DmD21 cell	S10 2-6h #1 (8)	V033 CMEW1 Cl.8+ cell	SRR029028 untreated (mock)	GSM379057 Krimp Mutant	S16 KC -48 #1	SRR029032 r2d2 knockdown	V019 GM2 cell	SRR032094 ago2 knockdown	GSM379065 Zuc Heterozygote	S15 S2 -48 #1	GSM379064 Vasa Mutant	V088 r2d2[1] ovary total RNA	V097 CS ovary	V028 CMEW1 Cl.8+ cell	SRR029029 dcr-1 knockdown	GSM379051 Armi Mutant	SRR029030 dcr-2 knockdown	S22 female head #1	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V098 dcr-2[L811fsX] ovary	GSM379054 Flam Heterozygote	S28 0-2d pupae	SRR029033 lacZ knockdown	GSM379063 Vasa Heterozygote	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM379059	GSM379060 SpnE Heterozygote	S34 KC+48 #1	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM379056 Krimp Heterozygote	V066 r2d2[1], ovary, AGO1IP	SRR001348 ago2 oxidized	V067 S2-NP	GSM379066 Zuc Mutant	SRR001345 ago2 non-beta-eliminated	S35 KC+48 #2	S9 0-1h #3 (7)	V063 CS,ovary,AGO1IP	GSM379053 Aub Mutant	GSM379050 Armi Heterozygote	GSM379062 Squ Mutant	SRR014280 Ovary_rep1 w1118_P	S14 0-1hr #1 (A)	GSM379052 Aub Heterozygote	S19 2-4day pupae #1	GSM379055 Flam Mutant	GSM379058	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014275 Ovary_rep1 LK_P	GSM379067 SpnE Mutant	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S11 2-6h #2 (9)	S24 male body #2	V082 embryo 14-24hr	S23 female body #2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR014277 Ovary_rep1 NA_P	SRR014282 Ovary_rep1 wK_P	S8 S2-48,+48, KC-48, +48 mix	S21 disk #2	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR032093 ago1 knockdown	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	V001 IR-	SRR001343 dcr-2 non-beta-eliminated	V083 male, one day	GSM379061 Squ Heterozygote	V002 IR+	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S27 0-1d Pupae (w)	GSM280082 WT ovaries (18-29nt)	S5 imaginal disc	S2 female head	V084 female, one day	SRR014273 Ovary_rep1_Har_P	GSM280088 S2cell (AGO1IP)	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM280084 loqs-/- ovaries (18-29nt)	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V089 ago2[414] ovary total RNA	SRR031693_4	SRR001344 dcr-2 beta-eliminated	V090 CS  male total RNA	S1 male head	V064 ago2[414], ovary, AGO1IP	GSM343287 Drosophila Toll 10b mutant embryos	S4 female body	SRR029031 loqs-ORF knockdown	S7 12-24hr embryo	S17 3rd inster #1	GSM180332 mid embryo (6-10)	SRR032095 AGO1 IP dcr2 knockdown	S3 male body	SRR010959 Ago3 IP in heterozygotes	GSM180331 early embryo (2-6)	S20 2-4day pupae#2	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR001337 WT_females beta-eliminated	S18 3rd inster #2	GSM180337 tissue culture cells (S2 only)	GSM180328 adult heads (female heads, male heads)	GSM180335 imaginal discs	S25 1st instar #1	GSM180329 adult bodies (female bodies, male bodies)	GSM467731 loq	GSM180333 late embryo (12-24)	SRR010960 wt, oxidized	GSM467729 WT	SRR010953 Aub heterozygotes, oxidized	SRR010954 Aub trans-heterozygotes, oxidized	GSM280085 WT testes (18-24nt)	GSM280087 S2cell (AGO2IP)	GSM180334 larvae: 1st instar and 3rd instars	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180330 very early embryo (0-1)	S26 1st instar #2	SRR023400 total RNA extracted from P19 cells	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	SRR001346 ago2 beta-eliminated	SRR010957 Aub IP in Ago3 trans-heterozygotes	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023197 RNA Library from S2 control cells	SRR023407 RNA bound by NLS-P19 protein	SRR010951 Ago3 heterozygotes, oxidized	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR032096 AGO2 IP dcr2 knockdown	GSM239041 fly heads, non beta-eliminated	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR032092 mock oxidized	GSM424740 S2 pKF63 stably transfected	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM239050 fly heads, beta-eliminated	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM239052 S2 cells, non beta-eliminated	GSM467730 r2d2	GSM424739 S2 parental
........................GACAATATTGCTCAACATTTTGG.............................................................................................................	23	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACAATATTGCTCAACATTTTGG.............................................................................................................	22	1	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CAATATTGCTCAACATTTTG..............................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CAATATTGCTCAACATTTTGG.............................................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AATATTGCTCAACATTTTGG.............................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AATATTGCTCAACATTTTG..............................................................................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................ATATTGCTCAACATTTTGG.............................................................................................................	19	1	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GGGGGTAAAACTGTACGTTATATGTGC...................................................................................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GGGGGTAAAACTGTACGTTATATG......................................................................................	24	1	438	0	0	6	0	0	1	6	0	1	10	3	12	4	4	0	1	4	3	3	7	1	5	10	2	6	1	1	0	24	59	1	0	4	0	5	11	2	0	0	1	0	4	0	2	2	0	12	41	2	0	0	0	3	1	3	43	0	3	0	0	4	0	1	0	16	1	16	3	8	2	1	0	1	5	0	0	1	5	0	0	0	0	0	5	0	0	1	1	0	3	4	5	0	4	0	0	0	0	0	0	0	0	1	0	1	2	2	1	0	0	4	0	0	0	3	0	0	2	0	0	4	5	0	0	0	0	0	0	1	0	0	0	0	0	0	5	0	0	0	0	1	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GGGGGTAAAACTGTACGTT...........................................................................................	19	1	4	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GGGGGTAAAACTGTACGTTA..........................................................................................	20	1	16	1	0	0	0	1	1	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GGGGGTAAAACTGTACGTTAT.........................................................................................	21	1	22	2	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GGGGGTAAAACTGTACGT............................................................................................	18	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................TCCCCTTAAAAGTTAGAGCT................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAAAGTTAGAGCTATTGCAACGA......................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAAAGTTAGAGCTATTGCAACGAA.....................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAAAGTTAGAGCTATTGCAACGAAAA...................	26	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAGAGCTATTGCAACGAAAAGT.................	22	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TATTGCAACGAAAAGTGTTTTT...........	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	V010 MLDmD20c5	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR029633 total small RNAs from hen1 homozygous flies	V020 S2R+ cell	V024 kc167 cell	SRR031692 Total small RNAs from Oregon R	S32 s2+48 #2	SRR031696_2152	V076 ML-DmBG3-C2	V018 Kc167 cell	S33 KC-48 #2	SRR001349 heterozygous dcr-2_untreated	V011 Sg4	V026 1182-4H cell	SRR031701 Total small RNAs from r2d2 heterozygous flies	S30 s2-48 #2	V009 CMEL1	SRR001347 ago2 untreated	SRR031703 Total small RNAs from r2d2 homozygous flies	S31 s2+48 #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V008 S2-DRSC	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001338 IR non-beta-eliminated	S29 male head #1	V075 ML-DmBG1-C1	V081 embryo 2-6hr	SRR001664 homozygous dcr-2_untreated	S13 6-10h #2 (11)	V025 S2R+ cell	S12 6-10h #1 (10)	V021 ML-DmD21 cell	S10 2-6h #1 (8)	V033 CMEW1 Cl.8+ cell	SRR029028 untreated (mock)	GSM379057 Krimp Mutant	S16 KC -48 #1	SRR029032 r2d2 knockdown	V019 GM2 cell	SRR032094 ago2 knockdown	GSM379065 Zuc Heterozygote	S15 S2 -48 #1	GSM379064 Vasa Mutant	V088 r2d2[1] ovary total RNA	V097 CS ovary	V028 CMEW1 Cl.8+ cell	SRR029029 dcr-1 knockdown	GSM379051 Armi Mutant	SRR029030 dcr-2 knockdown	S22 female head #1	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V098 dcr-2[L811fsX] ovary	GSM379054 Flam Heterozygote	S28 0-2d pupae	SRR029033 lacZ knockdown	GSM379063 Vasa Heterozygote	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM379059	GSM379060 SpnE Heterozygote	S34 KC+48 #1	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM379056 Krimp Heterozygote	V066 r2d2[1], ovary, AGO1IP	SRR001348 ago2 oxidized	V067 S2-NP	GSM379066 Zuc Mutant	SRR001345 ago2 non-beta-eliminated	S35 KC+48 #2	S9 0-1h #3 (7)	V063 CS,ovary,AGO1IP	GSM379053 Aub Mutant	GSM379050 Armi Heterozygote	GSM379062 Squ Mutant	SRR014280 Ovary_rep1 w1118_P	S14 0-1hr #1 (A)	GSM379052 Aub Heterozygote	S19 2-4day pupae #1	GSM379055 Flam Mutant	GSM379058	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR014275 Ovary_rep1 LK_P	GSM379067 SpnE Mutant	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S11 2-6h #2 (9)	S24 male body #2	V082 embryo 14-24hr	S23 female body #2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR014277 Ovary_rep1 NA_P	SRR014282 Ovary_rep1 wK_P	S8 S2-48,+48, KC-48, +48 mix	S21 disk #2	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR032093 ago1 knockdown	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	V001 IR-	SRR001343 dcr-2 non-beta-eliminated	V083 male, one day	GSM379061 Squ Heterozygote	V002 IR+	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S27 0-1d Pupae (w)	GSM280082 WT ovaries (18-29nt)	S5 imaginal disc	S2 female head	V084 female, one day	SRR014273 Ovary_rep1_Har_P	GSM280088 S2cell (AGO1IP)	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM280084 loqs-/- ovaries (18-29nt)	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V089 ago2[414] ovary total RNA	SRR031693_4	SRR001344 dcr-2 beta-eliminated	V090 CS  male total RNA	S1 male head	V064 ago2[414], ovary, AGO1IP	GSM343287 Drosophila Toll 10b mutant embryos	S4 female body	SRR029031 loqs-ORF knockdown	S7 12-24hr embryo	S17 3rd inster #1	GSM180332 mid embryo (6-10)	SRR032095 AGO1 IP dcr2 knockdown	S3 male body	SRR010959 Ago3 IP in heterozygotes	GSM180331 early embryo (2-6)	S20 2-4day pupae#2	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR001337 WT_females beta-eliminated	S18 3rd inster #2	GSM180337 tissue culture cells (S2 only)	GSM180328 adult heads (female heads, male heads)	GSM180335 imaginal discs	S25 1st instar #1	GSM180329 adult bodies (female bodies, male bodies)	GSM467731 loq	GSM180333 late embryo (12-24)	SRR010960 wt, oxidized	GSM467729 WT	SRR010953 Aub heterozygotes, oxidized	SRR010954 Aub trans-heterozygotes, oxidized	GSM280085 WT testes (18-24nt)	GSM280087 S2cell (AGO2IP)	GSM180334 larvae: 1st instar and 3rd instars	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180330 very early embryo (0-1)	S26 1st instar #2	SRR023400 total RNA extracted from P19 cells	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	SRR001346 ago2 beta-eliminated	SRR010957 Aub IP in Ago3 trans-heterozygotes	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023197 RNA Library from S2 control cells	SRR023407 RNA bound by NLS-P19 protein	SRR010951 Ago3 heterozygotes, oxidized	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR032096 AGO2 IP dcr2 knockdown	GSM239041 fly heads, non beta-eliminated	GSM280086 WT ovaries (AGO2IP)	GSM239051 S2 cells, beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR032092 mock oxidized	GSM424740 S2 pKF63 stably transfected	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM239050 fly heads, beta-eliminated	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM239052 S2 cells, non beta-eliminated	GSM467730 r2d2	GSM424739 S2 parental
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